Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00168

Orthogroup ID

OG0005429

Physical Location & Seq

Genomic Coordinates Forward (+)

28095 .. 41686

Gene Structure 13592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G004390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2850 bp

ATGGCTCCGATTCCGCCAGACAACGGCGTAGAAGGAGACGATGAGCGAGATGAGGAGGAGGAAGAAGAGGAGGAGGAGGAGGAGGAAGTGGAAGAGGAAGAGGAGGAAGAGGAGGAGGAGGAGCCGAGGCTCAAGTACCAGAGAATGGGAGGCAGCATTCCTACGCTTCTAGCGAACGACGTCGCTTCGTGTATCGCCGTGGCGGAGCGGATGATCGCGCTCGGGACGCACGGCGGGACAATTCATATTCTCGATTTTCTCGGCAATCAGGTCAAGGAATTTTCTGCTCATACTGCTGCTGTGAATGATCTTAGCTTTGACATAGAAGGTGAATATATAGGAAGCTGTTCAGATGATGGGTCTGTCGTAATAAACAGCCTTTTCACAGATGAGAAAATGAAGTTTGAGTATCATCGCCCTATGAAGGCTATTGCTGTAGATCCAGATTATGCAAAAAAATCATCTAGAAGATTTGTAGCTGGTGGGCTCGCAGGCCACTTATACTTCAATACGAAAAGATGGCTTGGCTTTAAAGATCAGGTTTTGCATTCTGGTGAGGGTCCAATACATGCGGTGAAGTGGAGATCAAGTCTCATTGCTTGGGCGAATGATGCAGGCGTGAAAGTATATGATACCGCAAATGATCAGCGCATAACATTCATAGAAAGACCACGTGGAAGCCCACGTCCTGAGCTTTTGCTCCCTCACTTAGTTTGGCAGGATGACACACTGTTGGTCATTGCTTGGGGAACATCAATCAAAATCACATCAATAAAAACAAATCAGTCTAAAGCAGCCAATGGCTCATATAGGCCTGTCCCAGTTTCCAGTATGAACCAGGTGGATATTGTGGCATCCTTTAGTACCAGCTATTTCATATCAGGAATTGCCCCTTTTGGTGATTCTTTGGTCGTTCTAGCTTATATCCCTGGTGAAGACGATGGGGAGAAGGAATTTAGTAGCTCTGTTCCTTCACGTCAGCAGGGAAATGCACAGAGACCAGAAGTACGCGTTGTGACATGGAATAATGATGAACTTTCAACAGATGCCCTTCCTGTACATGGCTTTGAGCATTACAAGGCAAAGGACTATTCACTTGCTCATGCTCCTTTCTCAGGTAGCAGCTATGCTGGTGGTCAGTGGGCTGAAGGTGATGAACCACTGTACTATATTGTATCACCAAAGGATGTGGTCATAGCAAAACCCAGAGATGCTGAAGATCATATTGCTTGGCTTCTTCAACATGGTGCACACGAAAAAGCTTTGGCTGCAGTTGAAGCTGGCCAGGGACGAAGTGAACTTCTTGATGAGGTTGGTTCTAGATACCTTGATCATTTGATTGTGGAAAGAAAATATGCCGAAGCAGCATCTTTGTGTCCCAAATTGTTGCGAGGATCGGCATCTGCATGGGAAAGATGGGTTTTCCACTTTGCTCATCTGCGTCAGCTTCCAGTACTAGTGCCATATATACCAACAGAAAACCCAAGATTACGTGATACTGCATATGAGGTTGCTCTTGTGGCTATTGCTACAAACCCATCTTTTCATACGGAGCTCTTGTCAACTGTCAGATCATGGCCACCTGTGATTTATTCTGCATTGCCTGTAATCTCTGCTATAGAACCTCAGCTCAACACATCCTCCATGACAGATGCTCTTAAGGAGGCACTAGCAGAGTTGTATGTGATTGATGGGCAATATGAGAAAGCCTTTTCACTATATGCTGATCTTATGAACCCAAATGTATTTGTCTTCATCGAAAAACACAATCTATATGATTCGATTCGGGAAAAGGTCGTCCCACTGATGATGCTGGATTGCAAGCATGCTGTTCCTTTATTGATTCAAAATAAGGACTTGATTACTCCGTCTCAAGTTGTCAAACAACTTTTGAATGCGAGTGATAAGTGCGATTCCAGAAATTACTTGCATCTATATTTGCATTCACTATTTGAAGTAGACCCTCATGCTGGAAAAGATTTCCATGATATGCAGGTAGAGCTTTATGCAGACTATGATTCAAAGATGCTGCTTCCTTTTCTTCGTAGTAGTCAACATTATACACTTGAGAAGGCATATGAAATTTGCATCAGAAAGGATCTTGTAAAGGAGCAAGTTTTCATTCTTGGAAGAATGGGAAATGCAAAACAAGCCCTTGCTATAATCATTAATAAACTAGGGGACATTGAAGAGGCTGTTGAATTTGTGAGTATGCAACATGATGATGAACTATGGGAGGAATTGATCCAGCAGTGTCTTCATAAACCTGAGATGGTCGGCGTGCTATTGGAGCACACTGTTGGAAATCTTGATCCTCTTTATATTGTGAATATGGTTCCCAATGGACTGGAGATTCCTCTGCTCAGGGATAGGCTAGTCAAAATTATCACCAATTACAGGACTGAAACATCTCTAAGACATGGGTGCAATGACATCCTTAAGGCTGATATTGTGAACCTCTTGGTCAAATACTACAATGAGGCAAGACATGGAATTTACTTGAGCAATGAAGAAGATGAGGCACGAGCAAAAAGGAATGATGGTAGGACTTCTCAAGTGGTTGAGAAATCATCTGGTGTGAGAAGTATGGAGGTTAAATCAAAATCGAAGGGTGGTGCAAGGTGTTGCATATGTTTCGATCCGTTTTCTATACAGAGTGTTAATGTCATTGTTTTCTTTTGCTGTCATGCTTATCACATGACTTGTCTTATGGATTCCACCTACACTAGTGGAATGAATGGGAATTATGGGTATGATGATAGTGATGTGGATGATGATGGTGATGATGGTCCCCAATCGGGTGGCTCTCGCATGCGTTGTATCTTATGTACCACTGCTAGTGGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019899 GO:0030897 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033263 GO:0033365 GO:0034613 GO:0035542 GO:0042144 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048284 GO:0050789 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0097576 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Clathrin

Protein Analysis

949

Amino Acids

106.25

Weight (kDa)

4.95

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Vps41	PF23411	44 - 401	1.7e-99	Vps42 beta-propeller
Beta-prop_WDR3_1st	PF25173	64 - 133	4.9e-06	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	64 - 133	6.3e-06	WDHD1 first WD40 domain
TPR_Vps41	PF23556	437 - 777	4.1e-148	Vps41 TPR-like region
Clathrin	PF00637	637 - 755	2e-09	Region in Clathrin and VPS
zf-RING_Vps41	PF23555	874 - 912	1.6e-12	Vps41 C-terminal RING finger domain
zf_RING_Vps8	PF23412	875 - 915	8.5e-06	Vps8 RING zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08190
fragaria_vesca	FvH4_3g30370 FvH4_3g30370 FvH4_3g30370 FvH4_3g30370 FvH4_3g30370
malus_domestica	MD03G1129800.v1.1 MD11G1151700.v1.1
prunus_persica	Prupe.6G114800_v2.0.a1 Prupe.6G114800_v2.0.a1
pyrus_communis	pycom11g12380 pycom11g12390
rosa_chinensis	RchiOBHm_Chr5g0056311
rosa_laevigata	RLG00000035067 RLG00000035070 RLG00000035077 RLG00000035080 RLG00000035082
rosa_multiflora	Rmu_sc0000680.1_g000003
rosa_roxburghii	Rroxscaffold_1G00024010
rosa_rugosa	Rorug05G0298600 Rorug05G0298700 Rorug05G0298800
rosa_samantha	Rh5AG369600 Rh5BG380500 Rh5CG404000 Rh5DG393600
rosa_wichuraiana	Rw0G004390 Rw0G012630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	183
Acc36I	ACCTGC	1 cut(s)	1984
AccB7I	CCANNNNNTGG	1 cut(s)	145
AccBSI	CCGCTC	1 cut(s)	208
AccI	GTMKAC	1 cut(s)	1959
AccII	CGCG	2 cut(s)	218, 1011
AciI	CCGC	6 cut(s)	14, 203, 208, 234, 572, 636
AclWI	GGATC	6 cut(s)	434, 1402, 2106, 2239, 2306, 2633
AcoI	YGGCCR	2 cut(s)	1282, 1577
AcsI	RAATTY	5 cut(s)	278, 953, 2082, 2201, 2493
AcuI	CTGAAG	2 cut(s)	1167, 1236
AcvI	CACGTG	1 cut(s)	674
AcyI	GRCGYC	1 cut(s)	180
AfaI	GTAC	7 cut(s)	137, 865, 1008, 1059, 1166, 1455, 2830
AfiI	CCNNNNNNNGG	8 cut(s)	23, 145, 424, 1061, 1115, 1970, 2397, 2798
AflII	CTTAAG	2 cut(s)	1658, 2438
AflIII	ACRYGT	1 cut(s)	1009
AhlI	ACTAGT	2 cut(s)	1456, 2726
AjiI	CACGTC	2 cut(s)	686, 977
AjnI	CCWGG	3 cut(s)	837, 928, 1284
Alw21I	GWGCWC	3 cut(s)	1252, 1557, 2295
Alw26I	GTCTC	4 cut(s)	30, 596, 991, 1875
Alw44I	GTGCAC	1 cut(s)	1248
AlwI	GGATC	6 cut(s)	434, 1402, 2106, 2239, 2306, 2633
Ama87I	CYCGRG	1 cut(s)	221
AoxI	GGCC	4 cut(s)	493, 812, 1282, 1577
ApaLI	GTGCAC	1 cut(s)	1248
ApeKI	GCWGC	7 cut(s)	153, 296, 794, 1122, 1268, 1364, 2029
ApoI	RAATTY	5 cut(s)	278, 953, 2082, 2201, 2493
AseI	ATTAAT	1 cut(s)	2169
Asp700I	GAANNNNTTC	1 cut(s)	346
AspLEI	GCGC	2 cut(s)	220, 651
AspS9I	GGNCC	2 cut(s)	560, 2789
AsuHPI	GGTGA	9 cut(s)	341, 566, 586, 911, 944, 1163, 1170, 2380, 2792
AvaI	CYCGRG	1 cut(s)	221
AvaII	GGWCC	2 cut(s)	560, 2789
BaeGI	GKGCMC	1 cut(s)	1252
BalI	TGGCCA	2 cut(s)	1284, 1579
BanII	GRGCYC	2 cut(s)	489, 1557
BauI	CACGAG	1 cut(s)	2523
BbrPI	CACGTG	1 cut(s)	674
BbsI	GAAGAC	3 cut(s)	942, 1744, 2249
Bbv12I	GWGCWC	3 cut(s)	1252, 1557, 2295
BbvCI	CCTCAGC	1 cut(s)	1626
BbvI	GCAGC	7 cut(s)	165, 283, 806, 1134, 1255, 1376, 2016
BceAI	ACGGC	3 cut(s)	40, 182, 247
BcgI	CGANNNNNNTGC	2 cut(s)	2617, 2651
BciT130I	CCWGG	3 cut(s)	839, 930, 1286
BclI	TGATCA	2 cut(s)	643, 1330
BcoDI	GTCTC	4 cut(s)	30, 596, 991, 1875
BcuI	ACTAGT	2 cut(s)	1456, 2726
BfmI	CTRYAG	3 cut(s)	435, 1269, 1617
BfrI	CTTAAG	2 cut(s)	1658, 2438
BfuAI	ACCTGC	1 cut(s)	1984
BisI	GCNGC	7 cut(s)	154, 297, 795, 1123, 1269, 1365, 2030
BlsI	GCNGC	7 cut(s)	155, 298, 796, 1124, 1270, 1366, 2031
BmcAI	AGTACT	1 cut(s)	1455
Bme1390I	CCNGG	3 cut(s)	839, 930, 1286
Bme18I	GGWCC	2 cut(s)	560, 2789
BmeT110I	CYCGRG	1 cut(s)	221
BmgBI	CACGTC	2 cut(s)	686, 977
BmgT120I	GGNCC	2 cut(s)	560, 2789
BmiI	GGNNCC	5 cut(s)	6, 123, 561, 2337, 2791
BmrFI	CCNGG	3 cut(s)	839, 930, 1286
BmrI	ACTGGG	1 cut(s)	815
BmuI	ACTGGG	1 cut(s)	815
BpiI	GAAGAC	3 cut(s)	942, 1744, 2249
BpmI	CTGGAG	1 cut(s)	2369
Bpu10I	CCTNAGC	3 cut(s)	690, 1626, 2363
BpuEI	CTTGAG	5 cut(s)	116, 1857, 2087, 2521, 2538
BsaAI	YACGTR	2 cut(s)	674, 1493
BsaBI	GATNNNNATC	1 cut(s)	1399
BsaHI	GRCGYC	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	991
BsaJI	CCNNGG	4 cut(s)	125, 198, 928, 1285
BsaXI	ACNNNNNCTCC	6 cut(s)	574, 604, 1544, 1574, 1625, 1655
Bsc4I	CCNNNNNNNGG	8 cut(s)	23, 145, 424, 1061, 1115, 1970, 2397, 2798
Bse1I	ACTGG	4 cut(s)	821, 828, 1451, 2352
Bse3DI	GCAATG	5 cut(s)	594, 738, 1598, 2434, 2512
Bse8I	GATNNNNATC	1 cut(s)	1399
BseBI	CCWGG	3 cut(s)	839, 930, 1286
BseDI	CCNNGG	4 cut(s)	125, 198, 928, 1285
BseGI	GGATG	7 cut(s)	216, 727, 854, 1192, 1637, 2433, 2776
BseJI	GATNNNNATC	1 cut(s)	1399
BseLI	CCNNNNNNNGG	8 cut(s)	23, 145, 424, 1061, 1115, 1970, 2397, 2798
BseMI	GCAATG	5 cut(s)	594, 738, 1598, 2434, 2512
BseMII	CTCAG	5 cut(s)	681, 1128, 1640, 2259, 2377
BseNI	ACTGG	4 cut(s)	821, 828, 1451, 2352
BseSI	GKGCMC	1 cut(s)	1252
BseXI	GCAGC	7 cut(s)	165, 283, 806, 1134, 1255, 1376, 2016
Bsh1236I	CGCG	2 cut(s)	218, 1011
BshFI	GGCC	4 cut(s)	495, 814, 1284, 1579
BsiHKAI	GWGCWC	3 cut(s)	1252, 1557, 2295
BsiHKCI	CYCGRG	1 cut(s)	221
BslFI	GGGAC	8 cut(s)	238, 250, 803, 1302, 1362, 1784, 2195, 2775
BslI	CCNNNNNNNGG	8 cut(s)	23, 145, 424, 1061, 1115, 1970, 2397, 2798
BsmAI	GTCTC	4 cut(s)	30, 596, 991, 1875
BsmBI	CGTCTC	2 cut(s)	30, 1875
BsmFI	GGGAC	8 cut(s)	238, 250, 803, 1302, 1362, 1784, 2195, 2775
BsmI	GAATGC	4 cut(s)	156, 547, 1900, 1942
BsnI	GGCC	4 cut(s)	495, 814, 1284, 1579
Bso31I	GGTCTC	1 cut(s)	991
BsoBI	CYCGRG	1 cut(s)	221
Bsp1286I	GDGCHC	4 cut(s)	489, 1252, 1557, 2295
Bsp1407I	TGTACA	1 cut(s)	1057
BspACI	CCGC	6 cut(s)	14, 203, 208, 234, 572, 636
BspANI	GGCC	4 cut(s)	495, 814, 1284, 1579
BspCNI	CTCAG	5 cut(s)	682, 1127, 1639, 2260, 2376
BspFNI	CGCG	2 cut(s)	218, 1011
BspLI	GGNNCC	5 cut(s)	6, 123, 561, 2337, 2791
BspMAI	CTGCAG	1 cut(s)	1273
BspMI	ACCTGC	1 cut(s)	1984
BspPI	GGATC	6 cut(s)	434, 1402, 2106, 2239, 2306, 2633
BspTI	CTTAAG	2 cut(s)	1658, 2438
BspTNI	GGTCTC	1 cut(s)	991
BsrBI	CCGCTC	1 cut(s)	208
BsrDI	GCAATG	5 cut(s)	594, 738, 1598, 2434, 2512
BsrGI	TGTACA	1 cut(s)	1057
BsrI	ACTGG	4 cut(s)	821, 828, 1451, 2352
BssECI	CCNNGG	4 cut(s)	125, 198, 928, 1285
BssNI	GRCGYC	1 cut(s)	180
BssSI	CACGAG	1 cut(s)	2523
Bst2BI	CACGAG	1 cut(s)	2523
Bst2UI	CCWGG	3 cut(s)	839, 930, 1286
Bst4CI	ACNGT	4 cut(s)	732, 1164, 1567, 2299
Bst6I	CTCTTC	5 cut(s)	60, 87, 93, 102, 2184
BstACI	GRCGYC	1 cut(s)	180
BstAFI	CTTAAG	2 cut(s)	1658, 2438
BstAUI	TGTACA	1 cut(s)	1057
BstBAI	YACGTR	2 cut(s)	674, 1493
BstC8I	GCNNGC	8 cut(s)	489, 493, 616, 1282, 1823, 1827, 2282, 2813
BstDEI	CTNAG	9 cut(s)	311, 690, 709, 1114, 1626, 2268, 2363, 2414, 2847
BstDSI	CCRYGG	1 cut(s)	198
BstENI	CCTNNNNNAGG	1 cut(s)	1113
BstF5I	GGATG	7 cut(s)	216, 727, 854, 1192, 1637, 2433, 2776
BstFNI	CGCG	2 cut(s)	218, 1011
BstHHI	GCGC	2 cut(s)	220, 651
BstMAI	GTCTC	4 cut(s)	30, 596, 991, 1875
BstNI	CCWGG	3 cut(s)	839, 930, 1286
BstNSI	RCATGY	3 cut(s)	572, 1829, 2815
BstSCI	CCNGG	3 cut(s)	837, 928, 1284
BstSFI	CTRYAG	3 cut(s)	435, 1269, 1617
BstSLI	GKGCMC	1 cut(s)	1252
BstUI	CGCG	2 cut(s)	218, 1011
BstV1I	GCAGC	7 cut(s)	165, 283, 806, 1134, 1255, 1376, 2016
BstV2I	GAAGAC	3 cut(s)	942, 1744, 2249
BstX2I	RGATCY	2 cut(s)	439, 2098
BstXI	CCANNNNNNTGG	2 cut(s)	2347, 2801
BstYI	RGATCY	2 cut(s)	439, 2098
BsuRI	GGCC	4 cut(s)	495, 814, 1284, 1579
BtgI	CCRYGG	1 cut(s)	198
BtgZI	GCGATG	1 cut(s)	398
BtrI	CACGTC	2 cut(s)	686, 977
BtsCI	GGATG	7 cut(s)	216, 727, 854, 1192, 1637, 2433, 2776
BtsI	GCAGTG	2 cut(s)	2258, 2832
BtsIMutI	CAGTG	7 cut(s)	728, 1145, 1160, 1802, 2258, 2295, 2832
BveI	ACCTGC	1 cut(s)	1984
Cac8I	GCNNGC	8 cut(s)	489, 493, 616, 1282, 1823, 1827, 2282, 2813
CfoI	GCGC	2 cut(s)	220, 651
Cfr13I	GGNCC	2 cut(s)	560, 2789
CseI	GACGC	2 cut(s)	235, 1430
CsiI	ACCWGGT	1 cut(s)	837
Csp6I	GTAC	7 cut(s)	136, 864, 1007, 1058, 1165, 1454, 2829
CspCI	CAANNNNNGTGG	2 cut(s)	1170, 1205
CviQI	GTAC	7 cut(s)	136, 864, 1007, 1058, 1165, 1454, 2829
DdeI	CTNAG	9 cut(s)	311, 690, 709, 1114, 1626, 2268, 2363, 2414, 2847
DraI	TTTAAA	1 cut(s)	532
EaeI	YGGCCR	2 cut(s)	1282, 1577
Eam1104I	CTCTTC	5 cut(s)	60, 87, 93, 102, 2184
EarI	CTCTTC	5 cut(s)	60, 87, 93, 102, 2184
EciI	GGCGGA	1 cut(s)	218
Ecl136II	GAGCTC	1 cut(s)	1555
Eco147I	AGGCCT	1 cut(s)	814
Eco24I	GRGCYC	2 cut(s)	489, 1557
Eco31I	GGTCTC	1 cut(s)	991
Eco47I	GGWCC	2 cut(s)	560, 2789
Eco53kI	GAGCTC	1 cut(s)	1555
Eco57I	CTGAAG	2 cut(s)	1167, 1236
Eco72I	CACGTG	1 cut(s)	674
Eco88I	CYCGRG	1 cut(s)	221
EcoICRI	GAGCTC	1 cut(s)	1555
EcoNI	CCTNNNNNAGG	1 cut(s)	1113
EcoRII	CCWGG	3 cut(s)	837, 928, 1284
EcoT38I	GRGCYC	2 cut(s)	489, 1557
Esp3I	CGTCTC	2 cut(s)	30, 1875
FaqI	GGGAC	8 cut(s)	238, 250, 803, 1302, 1362, 1784, 2195, 2775
FauI	CCCGC	1 cut(s)	227
FauNDI	CATATG	3 cut(s)	1504, 2077, 2630
FbaI	TGATCA	2 cut(s)	643, 1330
FblI	GTMKAC	1 cut(s)	1959
Fnu4HI	GCNGC	7 cut(s)	154, 297, 795, 1123, 1269, 1365, 2030
FokI	GGATG	7 cut(s)	223, 734, 841, 1199, 1624, 2420, 2783
FriOI	GRGCYC	2 cut(s)	489, 1557
Fsp4HI	GCNGC	7 cut(s)	154, 297, 795, 1123, 1269, 1365, 2030
GlaI	GCGC	2 cut(s)	219, 650
GluI	GCNGC	7 cut(s)	154, 297, 795, 1123, 1269, 1365, 2030
GsuI	CTGGAG	1 cut(s)	2369
HaeIII	GGCC	4 cut(s)	495, 814, 1284, 1579
HgaI	GACGC	2 cut(s)	235, 1430
HhaI	GCGC	2 cut(s)	220, 651
Hin1I	GRCGYC	1 cut(s)	180
Hin6I	GCGC	2 cut(s)	218, 649
HinP1I	GCGC	2 cut(s)	218, 649
HincII	GTYRAC	2 cut(s)	1563, 2054
HindII	GTYRAC	2 cut(s)	1563, 2054
HindIII	AAGCTT	1 cut(s)	1260
HinfI	GANTC	9 cut(s)	10, 902, 1778, 1783, 1843, 1913, 2018, 2353, 2714
HphI	GGTGA	9 cut(s)	341, 566, 586, 911, 944, 1163, 1170, 2380, 2792
Hpy166II	GTNNAC	6 cut(s)	1250, 1298, 1563, 1960, 2054, 2455
Hpy188I	TCNGA	4 cut(s)	9, 352, 1571, 2093
Hpy8I	GTNNAC	6 cut(s)	1250, 1298, 1563, 1960, 2054, 2455
Hpy99I	CGWCG	2 cut(s)	182, 185
HpyAV	CCTTC	9 cut(s)	26, 320, 418, 943, 981, 1061, 1142, 2065, 2602
HpyCH4III	ACNGT	4 cut(s)	732, 1164, 1567, 2299
HpyCH4IV	ACGT	5 cut(s)	180, 673, 685, 976, 1492
HpyF3I	CTNAG	9 cut(s)	311, 690, 709, 1114, 1626, 2268, 2363, 2414, 2847
HpySE526I	ACGT	5 cut(s)	180, 673, 685, 976, 1492
Hsp92I	GRCGYC	1 cut(s)	180
HspAI	GCGC	2 cut(s)	218, 649
Ksp22I	TGATCA	2 cut(s)	643, 1330
LmnI	GCTCC	9 cut(s)	10, 121, 205, 705, 1111, 1552, 2110, 2290, 2843
Lsp1109I	GCAGC	7 cut(s)	165, 283, 806, 1134, 1255, 1376, 2016
MabI	ACCWGGT	1 cut(s)	837
MaeII	ACGT	5 cut(s)	180, 673, 685, 976, 1492
MaeIII	GTNAC	1 cut(s)	1015
MbiI	CCGCTC	1 cut(s)	208
MflI	RGATCY	2 cut(s)	439, 2098
MhlI	GDGCHC	4 cut(s)	489, 1252, 1557, 2295
MlsI	TGGCCA	2 cut(s)	1284, 1579
MluI	ACGCGT	1 cut(s)	1009
MluNI	TGGCCA	2 cut(s)	1284, 1579
MmeI	TCCRAC	1 cut(s)	2281
Mox20I	TGGCCA	2 cut(s)	1284, 1579
MroXI	GAANNNNTTC	1 cut(s)	346
MscI	TGGCCA	2 cut(s)	1284, 1579
MseI	TTAA	6 cut(s)	531, 1659, 2169, 2439, 2595, 2661
MslI	CAYNNNNRTG	4 cut(s)	552, 1372, 1405, 2223
Msp20I	TGGCCA	2 cut(s)	1284, 1579
MspCI	CTTAAG	2 cut(s)	1658, 2438
MspR9I	CCNGG	3 cut(s)	839, 930, 1286
Mva1269I	GAATGC	4 cut(s)	156, 547, 1900, 1942
MvaI	CCWGG	3 cut(s)	839, 930, 1286
MvnI	CGCG	2 cut(s)	218, 1011
NdeI	CATATG	3 cut(s)	1504, 2077, 2630
NlaIV	GGNNCC	5 cut(s)	6, 123, 561, 2337, 2791
NmeAIII	GCCGAG	2 cut(s)	150, 240
NmuCI	GTSAC	1 cut(s)	1015
NspI	RCATGY	3 cut(s)	572, 1829, 2815
PaeI	GCATGC	2 cut(s)	1829, 2815
PceI	AGGCCT	1 cut(s)	814
PcsI	WCGNNNNNNNCGW	1 cut(s)	170
PctI	GAATGC	4 cut(s)	156, 547, 1900, 1942
PdmI	GAANNNNTTC	1 cut(s)	346
PfeI	GAWTC	9 cut(s)	10, 902, 1778, 1783, 1843, 1913, 2018, 2353, 2714
PflMI	CCANNNNNTGG	1 cut(s)	145
PkrI	GCNGC	7 cut(s)	155, 298, 796, 1124, 1270, 1366, 2031
PmaCI	CACGTG	1 cut(s)	674
PmlI	CACGTG	1 cut(s)	674
Ppu21I	YACGTR	2 cut(s)	674, 1493
PshBI	ATTAAT	1 cut(s)	2169
Psp124BI	GAGCTC	1 cut(s)	1557
Psp6I	CCWGG	3 cut(s)	837, 928, 1284
PspCI	CACGTG	1 cut(s)	674
PspGI	CCWGG	3 cut(s)	837, 928, 1284
PspN4I	GGNNCC	5 cut(s)	6, 123, 561, 2337, 2791
PspPI	GGNCC	2 cut(s)	560, 2789
PstI	CTGCAG	1 cut(s)	1273
PsuI	RGATCY	2 cut(s)	439, 2098
RsaI	GTAC	7 cut(s)	137, 865, 1008, 1059, 1166, 1455, 2830
RsaNI	GTAC	7 cut(s)	136, 864, 1007, 1058, 1165, 1454, 2829
RseI	CAYNNNNRTG	4 cut(s)	552, 1372, 1405, 2223
SacI	GAGCTC	1 cut(s)	1557
SaqAI	TTAA	6 cut(s)	531, 1659, 2169, 2439, 2595, 2661
SatI	GCNGC	7 cut(s)	154, 297, 795, 1123, 1269, 1365, 2030
Sau96I	GGNCC	2 cut(s)	560, 2789
ScaI	AGTACT	1 cut(s)	1455
ScrFI	CCNGG	3 cut(s)	839, 930, 1286
SduI	GDGCHC	4 cut(s)	489, 1252, 1557, 2295
SexAI	ACCWGGT	1 cut(s)	837
SfcI	CTRYAG	3 cut(s)	435, 1269, 1617
SinI	GGWCC	2 cut(s)	560, 2789
SmiMI	CAYNNNNRTG	4 cut(s)	552, 1372, 1405, 2223
SmlI	CTYRAG	7 cut(s)	131, 1658, 1872, 2066, 2438, 2500, 2553
SmoI	CTYRAG	7 cut(s)	131, 1658, 1872, 2066, 2438, 2500, 2553
SpeI	ACTAGT	2 cut(s)	1456, 2726
SphI	GCATGC	2 cut(s)	1829, 2815
SseBI	AGGCCT	1 cut(s)	814
SsiI	CCGC	6 cut(s)	14, 203, 208, 234, 572, 636
SstI	GAGCTC	1 cut(s)	1557
StuI	AGGCCT	1 cut(s)	814
StyD4I	CCNGG	3 cut(s)	837, 928, 1284
TaaI	ACNGT	4 cut(s)	732, 1164, 1567, 2299
TaiI	ACGT	5 cut(s)	183, 676, 688, 979, 1495
TaqI	TCGA	5 cut(s)	252, 1758, 1781, 2606, 2637
TatI	WGTACW	3 cut(s)	1057, 1164, 1453
TfiI	GAWTC	9 cut(s)	10, 902, 1778, 1783, 1843, 1913, 2018, 2353, 2714
Tru1I	TTAA	6 cut(s)	531, 1659, 2169, 2439, 2595, 2661
Tru9I	TTAA	6 cut(s)	531, 1659, 2169, 2439, 2595, 2661
TscAI	CASTG	7 cut(s)	735, 1145, 1167, 1809, 2258, 2302, 2839
TseFI	GTSAC	1 cut(s)	1015
TseI	GCWGC	7 cut(s)	153, 296, 794, 1122, 1268, 1364, 2029
Tsp45I	GTSAC	1 cut(s)	1015
TspGWI	ACGGA	3 cut(s)	1565, 1857, 2631
TspRI	CASTG	7 cut(s)	735, 1145, 1167, 1809, 2258, 2302, 2839
Van91I	CCANNNNNTGG	1 cut(s)	145
Vha464I	CTTAAG	2 cut(s)	1658, 2438
VneI	GTGCAC	1 cut(s)	1248
VpaK11BI	GGWCC	2 cut(s)	560, 2789
VspI	ATTAAT	1 cut(s)	2169
XagI	CCTNNNNNAGG	1 cut(s)	1113
XapI	RAATTY	5 cut(s)	278, 953, 2082, 2201, 2493
XbaI	TCTAGA	2 cut(s)	464, 1319
XceI	RCATGY	3 cut(s)	572, 1829, 2815
XmiI	GTMKAC	1 cut(s)	1959
XmnI	GAANNNNTTC	1 cut(s)	346
ZraI	GACGTC	1 cut(s)	181
ZrmI	AGTACT	1 cut(s)	1455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.