Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005429

Physical Location & Seq

Genomic Coordinates Reverse (-)

62519762 .. 62533566

Gene Structure 13805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG369600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3051 bp

ATGTCGTCAGCAGCAGCAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAAGAAGAGGAAGCACAGCGAAGCTCCCTCTCTCAAACCAAAACAGATCTTTCTCAAATTCTTCTTCACCTTCGCTTTGGAAGACGACGAGCCGCGAGAGCAGAGCTGAAGACCTACATAACAATGGCTCCGATTCCGCCAGACAACGGCGTAGAAGGAGACGATGAGCGAGATGAGGAGGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAAGTGGAAGTGGAAGAGGAAGAGGAGGAAGAGGAGGAGGAGCCCAGGCTCAAGTACCAGAGAATGGGAGGCAGCATTCCTACGCTTCTAGCGAACGACGTCGCTTCGTGTATCGCCGTGGCGGAGCGGATGATCGCGCTCGGGACGCACGGCGGGACAATTCATATTCTCGATTTTCTCGGCAATCAGGTCAAGGAATTTTCTGCTCATACTGCTGCTGTGAATGATCTTAGCTTTGACATAGAAGGTGAATATATAGGAAGCTGTTCAGATGATGGGTCTGTCGTAATAAACAGCCTTTTCACAGATGAGAAAATGAAGTTTGAGTATCATCGCCCTATGAAGGCTATTGCTGTAGATCCAGATTATGCAAAAAAATCATCTAGAAGATTTGTAGCTGGTGGGCTCGCAGGCCACTTATACTTCAATACGAAAAGATGGCTTGGCTTTAAAGATCAGGTTTTGCATTCTGGTGAGGGTCCAATACATGCGGTGAAGTGGAGATCAAGTCTCATTGCTTGGGCTAATGATGCAGGCGTGAAAGTATATGATACCGCAAATGATCAGCGCATAACATTCATAGAAAGACCACGTGGAAGCCCACGTCCTGAGCTTTTGCTCCCTCACTTAGTTTGGCAGGATGACACACTGTTGGTCATTGCTTGGGGAACATCAATCAAAATCACATCAATAAAAACAAATCAGTCTAAAGCAGCCAATGGCTCATATAGGCCTGTCCCAGTTTCCAGTATGAACCAGGTGGATATTGTGGCATCCTTTAGTACCAGCTATTTCATATCGGGAATTGCCCCTTTTGGTGATTCTTTGGTCGTTCTAGCTTATATCCCTGGTGAAGACGATGGGGAGAAGGAATTTAGTAGCTCTGTTCCATCACGTCAGGGAAATGCACAGAGACCAGAAGTACGCGTTGTGACATGGAATAATGATGAACTTTCAACAGATGCCCTTCCTGTACATGGCTTTGAGCATTACAAGGCAAAGGACTATTCACTTGCTCATGCTCCTTTCTCAGGTAGCAGCTATGCTGGTGGTCAGTGGGCTGAAGGTGATGAACCACTGTACTATATTGTATCACCAAAGGATGTGGTCATAGCAAAACCCAGAGATGCTGAAGATCATATTGCTTGGCTTCTTCAACATGGTGCACACGAAAAAGCTTTGGCTGCAGTTGAAGCTGGCCAGGGACGAAGTGAACTTCTTGATGAGGTTGGTTCTAGATACCTTGATCATTTGATTGTGGAAAGAAAATATGCCGAAGCAGCATCTTTGTGTCCCAAATTGTTGCGAGGATCGGCATCTGCATGGGAAAGATGGGTTTTCCACTTTGCTCATCTGCGTCAGCTTCCAGTACTAGTGCCATATATACCAACAGAAAACCCAAGATTACGTGATACTGCATATGAGGTTGCTCTTGTGGCTATTGCTACAAACCCATCTTTTCATACGGAGCTCTTGTCAACTGTCAGATCATGGCCACCTGTGATTTATTCTGCATTGCCTGTAATCTCTGCTATAGAACCTCAGCTCAACACATCCTCCATGACAGATGCTCTTAAGGAGGCACTAGCAGAGTTGTATGTGATTGATGGGCAATATGAGAAAGCCTTTTCACTATATGCTGATCTTATGAACCCAAATGTATTTGCCTTCATCGAAAAACACAATCTATATGATTCGATTCGGGAAAAGGTCGTCCCACTGATGATGCTGGATTGCAAGCATGCTGTTCCTTTATTGATTCAAAATAAGGACTTGATTACTCCGTCTCAAGTTGTCAAACAACTTTTGAATGCGAGTGATAAGTGCGATTCCAGAAATTACTTGCATCTATATTTGCATTCACTATTTGAAGTAGACCCTCATGCTGGAAAAGATTTCCATGATATGCAGGTAGAGCTTTATGCAGACTATGATTCAAAGATGCTGCTTCCTTTTCTTCGTAGTAGTCAACATTATACACTTGAGAAGGCATATGAAATTTGCATCAGAAAGGATCTTTTAAAGGAGCAAGTTTTCATTCTTGGAAGAATGGGAAATGCAAAACAAGCCCTTGCTATAATCATTAATAAACTAGGGGACATTGAAGAGGCTGTTGAATTTGTGAGTATGCAACATGATGATGAACTATGGGAGGAATTGATCCAGCAGTGTCTTCATAAACCTGAGATGGTCGGCGTGCTATTGGAGCACACTGTTGGAAATCTTGATCCTCTTTATATTGTGAATATGGTTCCCAATGGACTGGAGATTCCTCTGCTCAGGGATAGGCTAGTCAAAATTATCACCAATTACAGGACTGAAACATCTCTAAGACATGGGTGCAATGACATCCTTAAGGCTGATATTGTGAACCTCTTGGTCAAATACTACAATGAGGCAAGACATGGAATTTACTTGAGCAATGAAGAAGATGAGGCACGAGCAAAAAGGAATGATGGTAGGACTTCTCAAGTGGTTGAGAAATCATCTGGTGTGAGAAGTATGGAGGTTAAATCAAAATCGAAGGGTGGTGCAAGGTGTTGCATATGTTTCGATCCGTTTTCTATACAGAGTGTTAATGTCATTGTTTTCTTTTGCTGTCATGCTTATCACATGACTTGTCTTATGGATTCCACCTACACTAGTGGAATGAATGGGAGTGAGATCACTTCCCCGGAGAGAGTAACAGATTATGGGTATGATGATAGTGATGTGGATGATGATGGTGATGATGGTCCCCAATCGGGTGGCTCTCGCATGCGTTGTATCTTATGTACTACTGCTAGTGGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019899 GO:0030897 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033263 GO:0033365 GO:0034613 GO:0035542 GO:0042144 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048284 GO:0050789 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0097576 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Clathrin

Protein Analysis

1016

Amino Acids

113.89

Weight (kDa)

5.16

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Vps41	PF23411	102 - 458	1.5e-99	Vps42 beta-propeller
Beta-prop_WDR3_1st	PF25173	122 - 191	5.4e-06	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	122 - 191	6.9e-06	WDHD1 first WD40 domain
TPR_Vps41	PF23556	494 - 834	2.8e-148	Vps41 TPR-like region
Clathrin	PF00637	694 - 812	3.4e-09	Region in Clathrin and VPS
zf-RING_Vps41	PF23555	931 - 970	9e-13	Vps41 C-terminal RING finger domain
zf_RING_Vps8	PF23412	932 - 971	7.7e-06	Vps8 RING zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08190
fragaria_vesca	FvH4_3g30370 FvH4_3g30370 FvH4_3g30370 FvH4_3g30370 FvH4_3g30370
malus_domestica	MD03G1129800.v1.1 MD11G1151700.v1.1
prunus_persica	Prupe.6G114800_v2.0.a1 Prupe.6G114800_v2.0.a1
pyrus_communis	pycom11g12380 pycom11g12390
rosa_chinensis	RchiOBHm_Chr5g0056311
rosa_laevigata	RLG00000035067 RLG00000035070 RLG00000035077 RLG00000035080 RLG00000035082
rosa_multiflora	Rmu_sc0000680.1_g000003
rosa_roxburghii	Rroxscaffold_1G00024010
rosa_rugosa	Rorug05G0298600 Rorug05G0298700 Rorug05G0298800
rosa_samantha	Rh5AG369600 Rh5BG380500 Rh5CG404000 Rh5DG393600
rosa_wichuraiana	Rw0G004390 Rw0G012630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	357
Acc36I	ACCTGC	1 cut(s)	2155
AccB7I	CCANNNNNTGG	1 cut(s)	319
AccBSI	CCGCTC	1 cut(s)	382
AccI	GTMKAC	1 cut(s)	2130
AccII	CGCG	3 cut(s)	140, 392, 1182
AciI	CCGC	7 cut(s)	138, 182, 377, 382, 408, 746, 810
AclWI	GGATC	6 cut(s)	608, 1573, 2277, 2410, 2477, 2804
AcoI	YGGCCR	2 cut(s)	1453, 1748
AcsI	RAATTY	6 cut(s)	102, 452, 1127, 2253, 2372, 2664
AcuI	CTGAAG	3 cut(s)	173, 1338, 1407
AcvI	CACGTG	1 cut(s)	848
AcyI	GRCGYC	1 cut(s)	354
AfaI	GTAC	7 cut(s)	311, 1039, 1179, 1230, 1337, 1626, 3031
AfiI	CCNNNNNNNGG	8 cut(s)	191, 319, 598, 1232, 1286, 2141, 2568, 2999
AflII	CTTAAG	2 cut(s)	1829, 2609
AflIII	ACRYGT	1 cut(s)	1180
AhlI	ACTAGT	2 cut(s)	1627, 2897
AjiI	CACGTC	2 cut(s)	860, 1151
AjnI	CCWGG	4 cut(s)	299, 1011, 1102, 1455
Alw21I	GWGCWC	3 cut(s)	1423, 1728, 2466
Alw26I	GTCTC	4 cut(s)	198, 770, 1162, 2046
Alw44I	GTGCAC	1 cut(s)	1419
AlwI	GGATC	6 cut(s)	608, 1573, 2277, 2410, 2477, 2804
Ama87I	CYCGRG	1 cut(s)	395
AoxI	GGCC	4 cut(s)	667, 986, 1453, 1748
ApaLI	GTGCAC	1 cut(s)	1419
ApeKI	GCWGC	9 cut(s)	11, 14, 327, 470, 968, 1293, 1439, 1535, 2200
ApoI	RAATTY	6 cut(s)	102, 452, 1127, 2253, 2372, 2664
AseI	ATTAAT	1 cut(s)	2340
Asp700I	GAANNNNTTC	1 cut(s)	520
AspLEI	GCGC	2 cut(s)	394, 825
AspS9I	GGNCC	2 cut(s)	734, 2990
AsuC2I	CCSGG	1 cut(s)	2930
AvaI	CYCGRG	1 cut(s)	395
AvaII	GGWCC	2 cut(s)	734, 2990
BaeGI	GKGCMC	1 cut(s)	1423
BalI	TGGCCA	2 cut(s)	1455, 1750
BanII	GRGCYC	3 cut(s)	300, 663, 1728
BauI	CACGAG	1 cut(s)	2694
BbrPI	CACGTG	1 cut(s)	848
BbsI	GAAGAC	4 cut(s)	133, 161, 1116, 2420
Bbv12I	GWGCWC	3 cut(s)	1423, 1728, 2466
BbvCI	CCTCAGC	1 cut(s)	1797
BbvI	GCAGC	9 cut(s)	23, 26, 339, 457, 980, 1305, 1426, 1547, 2187
BceAI	ACGGC	3 cut(s)	208, 356, 421
BcgI	CGANNNNNNTGC	2 cut(s)	2788, 2822
BciT130I	CCWGG	4 cut(s)	301, 1013, 1104, 1457
BclI	TGATCA	2 cut(s)	817, 1501
BcnI	CCSGG	1 cut(s)	2930
BcoDI	GTCTC	4 cut(s)	198, 770, 1162, 2046
BcuI	ACTAGT	2 cut(s)	1627, 2897
BfmI	CTRYAG	3 cut(s)	609, 1440, 1788
BfrI	CTTAAG	2 cut(s)	1829, 2609
BfuAI	ACCTGC	1 cut(s)	2155
BglII	AGATCT	1 cut(s)	91
BmcAI	AGTACT	1 cut(s)	1626
Bme1390I	CCNGG	5 cut(s)	301, 1013, 1104, 1457, 2930
Bme18I	GGWCC	2 cut(s)	734, 2990
BmeT110I	CYCGRG	1 cut(s)	395
BmgBI	CACGTC	2 cut(s)	860, 1151
BmgT120I	GGNCC	2 cut(s)	734, 2990
BmiI	GGNNCC	5 cut(s)	174, 297, 735, 2508, 2992
BmrFI	CCNGG	5 cut(s)	301, 1013, 1104, 1457, 2930
BmrI	ACTGGG	1 cut(s)	989
BmuI	ACTGGG	1 cut(s)	989
BpiI	GAAGAC	4 cut(s)	133, 161, 1116, 2420
BpmI	CTGGAG	1 cut(s)	2540
Bpu10I	CCTNAGC	3 cut(s)	864, 1797, 2534
BpuEI	CTTGAG	5 cut(s)	290, 2028, 2258, 2692, 2709
BpuMI	CCSGG	1 cut(s)	2930
BsaAI	YACGTR	2 cut(s)	848, 1664
BsaBI	GATNNNNATC	1 cut(s)	1570
BsaHI	GRCGYC	1 cut(s)	354
BsaI	GGTCTC	1 cut(s)	1162
BsaJI	CCNNGG	5 cut(s)	299, 372, 1102, 1456, 2928
BsaXI	ACNNNNNCTCC	8 cut(s)	157, 187, 748, 778, 1715, 1745, 1796, 1826
Bsc4I	CCNNNNNNNGG	8 cut(s)	191, 319, 598, 1232, 1286, 2141, 2568, 2999
Bse1I	ACTGG	4 cut(s)	995, 1002, 1622, 2523
Bse3DI	GCAATG	5 cut(s)	768, 912, 1769, 2605, 2683
Bse8I	GATNNNNATC	1 cut(s)	1570
BseBI	CCWGG	4 cut(s)	301, 1013, 1104, 1457
BseDI	CCNNGG	5 cut(s)	299, 372, 1102, 1456, 2928
BseGI	GGATG	7 cut(s)	390, 901, 1028, 1363, 1808, 2604, 2977
BseJI	GATNNNNATC	1 cut(s)	1570
BseLI	CCNNNNNNNGG	8 cut(s)	191, 319, 598, 1232, 1286, 2141, 2568, 2999
BseMI	GCAATG	5 cut(s)	768, 912, 1769, 2605, 2683
BseMII	CTCAG	5 cut(s)	855, 1299, 1811, 2430, 2548
BseNI	ACTGG	4 cut(s)	995, 1002, 1622, 2523
BseRI	GAGGAG	9 cut(s)	236, 257, 260, 263, 266, 293, 302, 305, 308
BseSI	GKGCMC	1 cut(s)	1423
BseXI	GCAGC	9 cut(s)	23, 26, 339, 457, 980, 1305, 1426, 1547, 2187
Bsh1236I	CGCG	3 cut(s)	140, 392, 1182
BshFI	GGCC	4 cut(s)	669, 988, 1455, 1750
BsiHKAI	GWGCWC	3 cut(s)	1423, 1728, 2466
BsiHKCI	CYCGRG	1 cut(s)	395
BsiSI	CCGG	1 cut(s)	2930
BslFI	GGGAC	8 cut(s)	412, 424, 977, 1473, 1533, 1955, 2366, 2976
BslI	CCNNNNNNNGG	8 cut(s)	191, 319, 598, 1232, 1286, 2141, 2568, 2999
BsmAI	GTCTC	4 cut(s)	198, 770, 1162, 2046
BsmBI	CGTCTC	2 cut(s)	198, 2046
BsmFI	GGGAC	8 cut(s)	412, 424, 977, 1473, 1533, 1955, 2366, 2976
BsmI	GAATGC	4 cut(s)	330, 721, 2071, 2113
BsnI	GGCC	4 cut(s)	669, 988, 1455, 1750
Bso31I	GGTCTC	1 cut(s)	1162
BsoBI	CYCGRG	1 cut(s)	395
Bsp1286I	GDGCHC	5 cut(s)	300, 663, 1423, 1728, 2466
Bsp1407I	TGTACA	1 cut(s)	1228
BspACI	CCGC	7 cut(s)	138, 182, 377, 382, 408, 746, 810
BspANI	GGCC	4 cut(s)	669, 988, 1455, 1750
BspCNI	CTCAG	5 cut(s)	856, 1298, 1810, 2431, 2547
BspFNI	CGCG	3 cut(s)	140, 392, 1182
BspLI	GGNNCC	5 cut(s)	174, 297, 735, 2508, 2992
BspMAI	CTGCAG	1 cut(s)	1444
BspMI	ACCTGC	1 cut(s)	2155
BspPI	GGATC	6 cut(s)	608, 1573, 2277, 2410, 2477, 2804
BspTI	CTTAAG	2 cut(s)	1829, 2609
BspTNI	GGTCTC	1 cut(s)	1162
BsrBI	CCGCTC	1 cut(s)	382
BsrDI	GCAATG	5 cut(s)	768, 912, 1769, 2605, 2683
BsrGI	TGTACA	1 cut(s)	1228
BsrI	ACTGG	4 cut(s)	995, 1002, 1622, 2523
BssECI	CCNNGG	5 cut(s)	299, 372, 1102, 1456, 2928
BssNI	GRCGYC	1 cut(s)	354
BssSI	CACGAG	1 cut(s)	2694
Bst2BI	CACGAG	1 cut(s)	2694
Bst2UI	CCWGG	4 cut(s)	301, 1013, 1104, 1457
Bst4CI	ACNGT	4 cut(s)	906, 1335, 1738, 2470
Bst6I	CTCTTC	6 cut(s)	45, 234, 264, 270, 279, 2355
BstACI	GRCGYC	1 cut(s)	354
BstAFI	CTTAAG	2 cut(s)	1829, 2609
BstAUI	TGTACA	1 cut(s)	1228
BstBAI	YACGTR	2 cut(s)	848, 1664
BstC8I	GCNNGC	8 cut(s)	663, 667, 790, 1453, 1994, 1998, 2453, 3014
BstDEI	CTNAG	9 cut(s)	485, 864, 883, 1285, 1797, 2439, 2534, 2585, 3048
BstDSI	CCRYGG	1 cut(s)	372
BstENI	CCTNNNNNAGG	1 cut(s)	1284
BstF5I	GGATG	7 cut(s)	390, 901, 1028, 1363, 1808, 2604, 2977
BstFNI	CGCG	3 cut(s)	140, 392, 1182
BstHHI	GCGC	2 cut(s)	394, 825
BstMAI	GTCTC	4 cut(s)	198, 770, 1162, 2046
BstNI	CCWGG	4 cut(s)	301, 1013, 1104, 1457
BstNSI	RCATGY	3 cut(s)	746, 2000, 3016
BstSCI	CCNGG	5 cut(s)	299, 1011, 1102, 1455, 2928
BstSFI	CTRYAG	3 cut(s)	609, 1440, 1788
BstSLI	GKGCMC	1 cut(s)	1423
BstUI	CGCG	3 cut(s)	140, 392, 1182
BstV1I	GCAGC	9 cut(s)	23, 26, 339, 457, 980, 1305, 1426, 1547, 2187
BstV2I	GAAGAC	4 cut(s)	133, 161, 1116, 2420
BstX2I	RGATCY	3 cut(s)	91, 613, 2269
BstXI	CCANNNNNNTGG	2 cut(s)	2518, 3002
BstYI	RGATCY	3 cut(s)	91, 613, 2269
BsuRI	GGCC	4 cut(s)	669, 988, 1455, 1750
BtgI	CCRYGG	1 cut(s)	372
BtgZI	GCGATG	1 cut(s)	572
BtrI	CACGTC	2 cut(s)	860, 1151
BtsCI	GGATG	7 cut(s)	390, 901, 1028, 1363, 1808, 2604, 2977
BtsI	GCAGTG	1 cut(s)	2429
BtsIMutI	CAGTG	6 cut(s)	902, 1316, 1331, 1973, 2429, 2466
BveI	ACCTGC	1 cut(s)	2155
Cac8I	GCNNGC	8 cut(s)	663, 667, 790, 1453, 1994, 1998, 2453, 3014
CfoI	GCGC	2 cut(s)	394, 825
Cfr13I	GGNCC	2 cut(s)	734, 2990
CseI	GACGC	2 cut(s)	409, 1601
CsiI	ACCWGGT	1 cut(s)	1011
Csp6I	GTAC	7 cut(s)	310, 1038, 1178, 1229, 1336, 1625, 3030
CspCI	CAANNNNNGTGG	2 cut(s)	1341, 1376
CviQI	GTAC	7 cut(s)	310, 1038, 1178, 1229, 1336, 1625, 3030
DdeI	CTNAG	9 cut(s)	485, 864, 883, 1285, 1797, 2439, 2534, 2585, 3048
DraI	TTTAAA	2 cut(s)	706, 2277
EaeI	YGGCCR	2 cut(s)	1453, 1748
Eam1104I	CTCTTC	6 cut(s)	45, 234, 264, 270, 279, 2355
EarI	CTCTTC	6 cut(s)	45, 234, 264, 270, 279, 2355
EciI	GGCGGA	2 cut(s)	171, 392
Ecl136II	GAGCTC	1 cut(s)	1726
Eco147I	AGGCCT	1 cut(s)	988
Eco24I	GRGCYC	3 cut(s)	300, 663, 1728
Eco31I	GGTCTC	1 cut(s)	1162
Eco47I	GGWCC	2 cut(s)	734, 2990
Eco53kI	GAGCTC	1 cut(s)	1726
Eco57I	CTGAAG	3 cut(s)	173, 1338, 1407
Eco72I	CACGTG	1 cut(s)	848
Eco88I	CYCGRG	1 cut(s)	395
EcoICRI	GAGCTC	1 cut(s)	1726
EcoNI	CCTNNNNNAGG	1 cut(s)	1284
EcoRII	CCWGG	4 cut(s)	299, 1011, 1102, 1455
EcoT38I	GRGCYC	3 cut(s)	300, 663, 1728
Esp3I	CGTCTC	2 cut(s)	198, 2046
FaqI	GGGAC	8 cut(s)	412, 424, 977, 1473, 1533, 1955, 2366, 2976
FauI	CCCGC	1 cut(s)	401
FauNDI	CATATG	3 cut(s)	1675, 2248, 2801
FbaI	TGATCA	2 cut(s)	817, 1501
FblI	GTMKAC	1 cut(s)	2130
FokI	GGATG	7 cut(s)	397, 908, 1015, 1370, 1795, 2591, 2984
FriOI	GRGCYC	3 cut(s)	300, 663, 1728
GlaI	GCGC	2 cut(s)	393, 824
GsuI	CTGGAG	1 cut(s)	2540
HaeIII	GGCC	4 cut(s)	669, 988, 1455, 1750
HapII	CCGG	1 cut(s)	2930
HgaI	GACGC	2 cut(s)	409, 1601
HhaI	GCGC	2 cut(s)	394, 825
Hin1I	GRCGYC	1 cut(s)	354
Hin6I	GCGC	2 cut(s)	392, 823
HinP1I	GCGC	2 cut(s)	392, 823
HincII	GTYRAC	2 cut(s)	1734, 2225
HindII	GTYRAC	2 cut(s)	1734, 2225
HindIII	AAGCTT	1 cut(s)	1431
HinfI	GANTC	9 cut(s)	178, 1076, 1949, 1954, 2014, 2084, 2189, 2524, 2885
HpaII	CCGG	1 cut(s)	2930
Hpy166II	GTNNAC	6 cut(s)	1421, 1469, 1734, 2131, 2225, 2626
Hpy188I	TCNGA	4 cut(s)	177, 526, 1742, 2264
Hpy8I	GTNNAC	6 cut(s)	1421, 1469, 1734, 2131, 2225, 2626
Hpy99I	CGWCG	3 cut(s)	135, 356, 359
HpyCH4III	ACNGT	4 cut(s)	906, 1335, 1738, 2470
HpyCH4IV	ACGT	5 cut(s)	354, 847, 859, 1150, 1663
HpyF3I	CTNAG	9 cut(s)	485, 864, 883, 1285, 1797, 2439, 2534, 2585, 3048
HpySE526I	ACGT	5 cut(s)	354, 847, 859, 1150, 1663
Hsp92I	GRCGYC	1 cut(s)	354
HspAI	GCGC	2 cut(s)	392, 823
Ksp22I	TGATCA	2 cut(s)	817, 1501
Lsp1109I	GCAGC	9 cut(s)	23, 26, 339, 457, 980, 1305, 1426, 1547, 2187
MabI	ACCWGGT	1 cut(s)	1011
MaeII	ACGT	5 cut(s)	354, 847, 859, 1150, 1663
MaeIII	GTNAC	2 cut(s)	1186, 2938
MbiI	CCGCTC	1 cut(s)	382
MflI	RGATCY	3 cut(s)	91, 613, 2269
MhlI	GDGCHC	5 cut(s)	300, 663, 1423, 1728, 2466
MlsI	TGGCCA	2 cut(s)	1455, 1750
MluI	ACGCGT	1 cut(s)	1180
MluNI	TGGCCA	2 cut(s)	1455, 1750
MmeI	TCCRAC	1 cut(s)	2452
Mox20I	TGGCCA	2 cut(s)	1455, 1750
MroXI	GAANNNNTTC	1 cut(s)	520
MscI	TGGCCA	2 cut(s)	1455, 1750
MseI	TTAA	7 cut(s)	705, 1830, 2276, 2340, 2610, 2766, 2832
MslI	CAYNNNNRTG	5 cut(s)	167, 726, 1543, 1576, 2394
Msp20I	TGGCCA	2 cut(s)	1455, 1750
MspCI	CTTAAG	2 cut(s)	1829, 2609
MspI	CCGG	1 cut(s)	2930
MspR9I	CCNGG	5 cut(s)	301, 1013, 1104, 1457, 2930
Mva1269I	GAATGC	4 cut(s)	330, 721, 2071, 2113
MvaI	CCWGG	4 cut(s)	301, 1013, 1104, 1457
MvnI	CGCG	3 cut(s)	140, 392, 1182
NciI	CCSGG	1 cut(s)	2930
NdeI	CATATG	3 cut(s)	1675, 2248, 2801
NlaIV	GGNNCC	5 cut(s)	174, 297, 735, 2508, 2992
NmeAIII	GCCGAG	1 cut(s)	414
NmuCI	GTSAC	1 cut(s)	1186
NspI	RCATGY	3 cut(s)	746, 2000, 3016
PaeI	GCATGC	2 cut(s)	2000, 3016
PceI	AGGCCT	1 cut(s)	988
PcsI	WCGNNNNNNNCGW	1 cut(s)	344
PctI	GAATGC	4 cut(s)	330, 721, 2071, 2113
PdmI	GAANNNNTTC	1 cut(s)	520
PfeI	GAWTC	9 cut(s)	178, 1076, 1949, 1954, 2014, 2084, 2189, 2524, 2885
PflMI	CCANNNNNTGG	1 cut(s)	319
PmaCI	CACGTG	1 cut(s)	848
PmlI	CACGTG	1 cut(s)	848
Ppu21I	YACGTR	2 cut(s)	848, 1664
PshBI	ATTAAT	1 cut(s)	2340
Psp124BI	GAGCTC	1 cut(s)	1728
Psp6I	CCWGG	4 cut(s)	299, 1011, 1102, 1455
PspCI	CACGTG	1 cut(s)	848
PspGI	CCWGG	4 cut(s)	299, 1011, 1102, 1455
PspN4I	GGNNCC	5 cut(s)	174, 297, 735, 2508, 2992
PspPI	GGNCC	2 cut(s)	734, 2990
PstI	CTGCAG	1 cut(s)	1444
PsuI	RGATCY	3 cut(s)	91, 613, 2269
RsaI	GTAC	7 cut(s)	311, 1039, 1179, 1230, 1337, 1626, 3031
RsaNI	GTAC	7 cut(s)	310, 1038, 1178, 1229, 1336, 1625, 3030
RseI	CAYNNNNRTG	5 cut(s)	167, 726, 1543, 1576, 2394
SacI	GAGCTC	1 cut(s)	1728
SaqAI	TTAA	7 cut(s)	705, 1830, 2276, 2340, 2610, 2766, 2832
Sau96I	GGNCC	2 cut(s)	734, 2990
ScaI	AGTACT	1 cut(s)	1626
ScrFI	CCNGG	5 cut(s)	301, 1013, 1104, 1457, 2930
SduI	GDGCHC	5 cut(s)	300, 663, 1423, 1728, 2466
SexAI	ACCWGGT	1 cut(s)	1011
SfcI	CTRYAG	3 cut(s)	609, 1440, 1788
SinI	GGWCC	2 cut(s)	734, 2990
SmiMI	CAYNNNNRTG	5 cut(s)	167, 726, 1543, 1576, 2394
SmlI	CTYRAG	7 cut(s)	305, 1829, 2043, 2237, 2609, 2671, 2724
SmoI	CTYRAG	7 cut(s)	305, 1829, 2043, 2237, 2609, 2671, 2724
SpeI	ACTAGT	2 cut(s)	1627, 2897
SphI	GCATGC	2 cut(s)	2000, 3016
SseBI	AGGCCT	1 cut(s)	988
SsiI	CCGC	7 cut(s)	138, 182, 377, 382, 408, 746, 810
SstI	GAGCTC	1 cut(s)	1728
StuI	AGGCCT	1 cut(s)	988
StyD4I	CCNGG	5 cut(s)	299, 1011, 1102, 1455, 2928
TaaI	ACNGT	4 cut(s)	906, 1335, 1738, 2470
TaiI	ACGT	5 cut(s)	357, 850, 862, 1153, 1666
TaqI	TCGA	5 cut(s)	426, 1929, 1952, 2777, 2808
TatI	WGTACW	4 cut(s)	1228, 1335, 1624, 3029
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	9 cut(s)	178, 1076, 1949, 1954, 2014, 2084, 2189, 2524, 2885
Tru1I	TTAA	7 cut(s)	705, 1830, 2276, 2340, 2610, 2766, 2832
Tru9I	TTAA	7 cut(s)	705, 1830, 2276, 2340, 2610, 2766, 2832
TscAI	CASTG	6 cut(s)	909, 1316, 1338, 1980, 2429, 2473
TseFI	GTSAC	1 cut(s)	1186
TseI	GCWGC	9 cut(s)	11, 14, 327, 470, 968, 1293, 1439, 1535, 2200
Tsp45I	GTSAC	1 cut(s)	1186
TspGWI	ACGGA	3 cut(s)	1736, 2028, 2802
TspRI	CASTG	6 cut(s)	909, 1316, 1338, 1980, 2429, 2473
Van91I	CCANNNNNTGG	1 cut(s)	319
Vha464I	CTTAAG	2 cut(s)	1829, 2609
VneI	GTGCAC	1 cut(s)	1419
VpaK11BI	GGWCC	2 cut(s)	734, 2990
VspI	ATTAAT	1 cut(s)	2340
XagI	CCTNNNNNAGG	1 cut(s)	1284
XapI	RAATTY	6 cut(s)	102, 452, 1127, 2253, 2372, 2664
XbaI	TCTAGA	2 cut(s)	638, 1490
XceI	RCATGY	3 cut(s)	746, 2000, 3016
XmiI	GTMKAC	1 cut(s)	2130
XmnI	GAANNNNTTC	1 cut(s)	520
ZraI	GACGTC	1 cut(s)	355
ZrmI	AGTACT	1 cut(s)	1626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.