Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005429

Physical Location & Seq

Genomic Coordinates Reverse (-)

60196261 .. 60197846

Gene Structure 1586 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035067

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGGAAATGCAAAACAAGCCCTTGGTATAATCATTAATAAATTAGGGGACATTGAAGAGGCTGTAGAATTTGTGAGTATGCAACATGATGATGAACTATGGGAGGAATTGATCCAGCAGTGTCTTCATAAACCTGAGATGGTATTTATATTAGCTAGTCGGCGTGCTATTGGAGCACACTGTTGGAATCTTGATCCTCTTTATACTGTGAATATGGTTCCCAATGGACTGGAGATTCCTGTGCTCAGGGATAGGCTAGTCAAAATTATCACCCATTACAAGACAGAAACATCTCTAAAACATGGGTGCAATGACATCCTTATGGCTGATATTCTGAACCTCTTGGTGAAACACTACAATGAGACAAGACTTGGAATTTACTTGAGTAATGAAGAAGATGAGGCACGAGCAAAAAGGAATAATGGCAGGACTTCTCAAGTGATTGAGAAATCATCACTGGTTGGAATGAATGGGAGTGGGATCACTTCCCCAGAGAAAGTAACAGATTATGGGTATGATGATAGTGATGTGGATGATGATGGTGATGATGGTCCCCAATCGGGTGGCTCTCGCATGCGTTGTATCCCATGTACTACTGCTAGTGGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019899 GO:0030897 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033263 GO:0033365 GO:0034613 GO:0035542 GO:0042144 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048284 GO:0050789 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0097576 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Clathrin

Protein Analysis

204

Amino Acids

22.56

Weight (kDa)

4.87

Isoelectric Point (pI)

47.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_Vps41	PF23556	1 - 54	3.3e-19	Vps41 TPR-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08190
fragaria_vesca	FvH4_3g30370 FvH4_3g30370 FvH4_3g30370 FvH4_3g30370 FvH4_3g30370
malus_domestica	MD03G1129800.v1.1 MD11G1151700.v1.1
prunus_persica	Prupe.6G114800_v2.0.a1 Prupe.6G114800_v2.0.a1
pyrus_communis	pycom11g12380 pycom11g12390
rosa_chinensis	RchiOBHm_Chr5g0056311
rosa_laevigata	RLG00000035067 RLG00000035070 RLG00000035077 RLG00000035080 RLG00000035082
rosa_multiflora	Rmu_sc0000680.1_g000003
rosa_roxburghii	Rroxscaffold_1G00024010
rosa_rugosa	Rorug05G0298600 Rorug05G0298700 Rorug05G0298800
rosa_samantha	Rh5AG369600 Rh5BG380500 Rh5CG404000 Rh5DG393600
rosa_wichuraiana	Rw0G004390 Rw0G012630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	106, 188, 488
AcsI	RAATTY	2 cut(s)	68, 375
AfaI	GTAC	1 cut(s)	592
AfiI	CCNNNNNNNGG	1 cut(s)	560
AgsI	TTSAA	1 cut(s)	56
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
Alw21I	GWGCWC	2 cut(s)	178, 246
Alw26I	GTCTC	1 cut(s)	356
AlwI	GGATC	3 cut(s)	106, 188, 488
ApoI	RAATTY	2 cut(s)	68, 375
AseI	ATTAAT	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	551
AsuHPI	GGTGA	3 cut(s)	262, 358, 554
AvaII	GGWCC	1 cut(s)	551
BauI	CACGAG	1 cut(s)	405
BbsI	GAAGAC	1 cut(s)	116
Bbv12I	GWGCWC	2 cut(s)	178, 246
BccI	CCATC	3 cut(s)	133, 533, 542
BciVI	GTATCC	1 cut(s)	593
BcoDI	GTCTC	1 cut(s)	356
BfaI	CTAG	3 cut(s)	156, 257, 600
BfmI	CTRYAG	1 cut(s)	63
BfuI	GTATCC	1 cut(s)	593
Bme18I	GGWCC	1 cut(s)	551
BmgT120I	GGNCC	1 cut(s)	551
BmiI	GGNNCC	2 cut(s)	219, 553
BpiI	GAAGAC	1 cut(s)	116
BpmI	CTGGAG	1 cut(s)	251
Bpu10I	CCTNAGC	1 cut(s)	245
BpuEI	CTTGAG	2 cut(s)	403, 420
BsaJI	CCNNGG	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	1 cut(s)	560
Bse1I	ACTGG	2 cut(s)	234, 462
Bse3DI	GCAATG	1 cut(s)	316
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	2 cut(s)	315, 538
BseLI	CCNNNNNNNGG	1 cut(s)	560
BseMI	GCAATG	1 cut(s)	316
BseMII	CTCAG	2 cut(s)	126, 259
BseNI	ACTGG	2 cut(s)	234, 462
BsiHKAI	GWGCWC	2 cut(s)	178, 246
BslFI	GGGAC	2 cut(s)	62, 537
BslI	CCNNNNNNNGG	1 cut(s)	560
BsmAI	GTCTC	1 cut(s)	356
BsmFI	GGGAC	2 cut(s)	62, 537
Bsp1286I	GDGCHC	2 cut(s)	178, 246
Bsp143I	GATC	3 cut(s)	111, 193, 480
BspCNI	CTCAG	2 cut(s)	127, 258
BspLI	GGNNCC	2 cut(s)	219, 553
BspPI	GGATC	3 cut(s)	106, 188, 488
BsrDI	GCAATG	1 cut(s)	316
BsrI	ACTGG	2 cut(s)	234, 462
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	3 cut(s)	111, 193, 480
BssSI	CACGAG	1 cut(s)	405
BssT1I	CCWWGG	1 cut(s)	22
Bst2BI	CACGAG	1 cut(s)	405
Bst4CI	ACNGT	2 cut(s)	182, 208
Bst6I	CTCTTC	1 cut(s)	51
BstC8I	GCNNGC	2 cut(s)	165, 575
BstDEI	CTNAG	2 cut(s)	135, 245
BstF5I	GGATG	2 cut(s)	315, 538
BstKTI	GATC	3 cut(s)	114, 196, 483
BstMAI	GTCTC	1 cut(s)	356
BstMBI	GATC	3 cut(s)	111, 193, 480
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 173
BstNSI	RCATGY	1 cut(s)	577
BstSFI	CTRYAG	1 cut(s)	63
BstV2I	GAAGAC	1 cut(s)	116
BstXI	CCANNNNNNTGG	2 cut(s)	229, 563
BsuI	GTATCC	1 cut(s)	593
BtsCI	GGATG	2 cut(s)	315, 538
BtsI	GCAGTG	1 cut(s)	125
BtsIMutI	CAGTG	3 cut(s)	125, 178, 455
Cac8I	GCNNGC	2 cut(s)	165, 575
Cfr13I	GGNCC	1 cut(s)	551
Csp6I	GTAC	1 cut(s)	591
CviAII	CATG	4 cut(s)	86, 302, 574, 588
CviJI	RGCY	6 cut(s)	20, 62, 155, 256, 326, 567
CviKI_1	RGCY	6 cut(s)	20, 62, 155, 256, 326, 567
CviQI	GTAC	1 cut(s)	591
DdeI	CTNAG	2 cut(s)	135, 245
DpnI	GATC	3 cut(s)	113, 195, 482
DpnII	GATC	3 cut(s)	111, 193, 480
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	551
EcoT14I	CCWWGG	1 cut(s)	22
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	4 cut(s)	89, 305, 577, 591
FaqI	GGGAC	2 cut(s)	62, 537
FatI	CATG	4 cut(s)	85, 301, 573, 587
FokI	GGATG	2 cut(s)	302, 545
FspBI	CTAG	3 cut(s)	156, 257, 600
GsuI	CTGGAG	1 cut(s)	251
Hin1II	CATG	4 cut(s)	89, 305, 577, 591
HinfI	GANTC	2 cut(s)	187, 235
HphI	GGTGA	3 cut(s)	262, 358, 554
Hpy188I	TCNGA	1 cut(s)	336
Hpy188III	TCNNGA	1 cut(s)	191
HpyCH4III	ACNGT	2 cut(s)	182, 208
HpyCH4V	TGCA	3 cut(s)	11, 82, 309
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 173
HpyF3I	CTNAG	2 cut(s)	135, 245
Hsp92II	CATG	4 cut(s)	89, 305, 577, 591
Kzo9I	GATC	3 cut(s)	111, 193, 480
LmnI	GCTCC	1 cut(s)	173
LpnPI	CCDG	8 cut(s)	128, 147, 215, 232, 252, 412, 443, 504
MaeI	CTAG	3 cut(s)	156, 257, 600
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	3 cut(s)	113, 195, 482
MboI	GATC	3 cut(s)	111, 193, 480
MboII	GAAGA	4 cut(s)	68, 116, 404, 407
MhlI	GDGCHC	2 cut(s)	178, 246
MluCI	AATT	6 cut(s)	41, 68, 107, 264, 375, 607
MmeI	TCCRAC	2 cut(s)	164, 442
MnlI	CCTC	5 cut(s)	52, 97, 207, 350, 394
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	3 cut(s)	90, 320, 357
MwoI	GCNNNNNNNGC	2 cut(s)	17, 173
NdeII	GATC	3 cut(s)	111, 193, 480
NlaIII	CATG	4 cut(s)	89, 305, 577, 591
NlaIV	GGNNCC	2 cut(s)	219, 553
NspI	RCATGY	1 cut(s)	577
PaeI	GCATGC	1 cut(s)	577
PfeI	GAWTC	2 cut(s)	187, 235
PshBI	ATTAAT	1 cut(s)	36
PspN4I	GGNNCC	2 cut(s)	219, 553
PspPI	GGNCC	1 cut(s)	551
RsaI	GTAC	1 cut(s)	592
RsaNI	GTAC	1 cut(s)	591
RseI	CAYNNNNRTG	3 cut(s)	90, 320, 357
SaqAI	TTAA	1 cut(s)	36
Sau3AI	GATC	3 cut(s)	111, 193, 480
Sau96I	GGNCC	1 cut(s)	551
SduI	GDGCHC	2 cut(s)	178, 246
SetI	ASST	3 cut(s)	136, 157, 342
SfcI	CTRYAG	1 cut(s)	63
SinI	GGWCC	1 cut(s)	551
SmiMI	CAYNNNNRTG	3 cut(s)	90, 320, 357
SmlI	CTYRAG	2 cut(s)	382, 435
SmoI	CTYRAG	2 cut(s)	382, 435
SphI	GCATGC	1 cut(s)	577
Sse9I	AATT	6 cut(s)	41, 68, 107, 264, 375, 607
SspMI	CTAG	3 cut(s)	156, 257, 600
StyI	CCWWGG	1 cut(s)	22
TaaI	ACNGT	2 cut(s)	182, 208
TasI	AATT	6 cut(s)	41, 68, 107, 264, 375, 607
TatI	WGTACW	1 cut(s)	590
TfiI	GAWTC	2 cut(s)	187, 235
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	3 cut(s)	125, 185, 462
TspDTI	ATGAA	4 cut(s)	108, 116, 405, 482
TspRI	CASTG	3 cut(s)	125, 185, 462
VpaK11BI	GGWCC	1 cut(s)	551
VspI	ATTAAT	1 cut(s)	36
XapI	RAATTY	2 cut(s)	68, 375
XceI	RCATGY	1 cut(s)	577
XspI	CTAG	3 cut(s)	156, 257, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.