Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000680.1

Orthogroup ID

OG0005429

Physical Location & Seq

Genomic Coordinates Forward (+)

10542 .. 21013

Gene Structure 10472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000680.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2640 bp

atgattgcacttcaacttcgcttgcaattggaagtcaaggaattttcagctcatactgctgctgtgaatgatcttagctttgacatagaaggtgaatatataggaagctgttcagatgatgggtctgtcataataaacagccttttcacagatgagaaaatgaagtttgagtatcatcgccctatgaaggctattgctgtagatccagattatgcaaaaaaatcatctagaagatttgtagctggtgggctcgcaggccacttatacttcaatacgaaaagatggcttggctttaaagatcaggttttgcattctggtgagggtccaatacatgcggtgaagtggagatcaagtctcattgcttgggctaatgatgcaggcgtgaaagtatatgataccgcaaatgatcagcgcataacattcatagaaagaccacgtggaagcccacgtcctgagcttttgctccctcacttagtttggcaggatgacacactgttggtcattgcttggggaacatcaatcaaaatcacatcaataaaaacaaatcagtctaaagcagccaatggctcatataggcctgtcccagtttccagtatgaaccaggtggatattgtggcatcctttagtaccagctatttcatatcgggaattgccccttttggtgattctttggtcgttctagcttatatccctggtgaagacgatggggagaaggaatttagtagctctgttccatcacgtcagggaaatgcacagagaccagaagtacgcgttgtgacatggaataatgatgaactttcaacagatgcccttcctgtacatggctttgagcattacaaggcaaaggactattcacttgctcatgctcctttctcaggtagcagctatgctggtggtcagtgggctgaaggtgatgaaccactgtactatattgtatcaccaaaggatgtggtcatagcaaaacccagagatgctgaagatcatattgcttggcttcttcaacatggtgcacacgaaaaagctttggctgcagttgaagctggccagggacgaagtgaacttcttgatgaggttggttctagataccttgatcatttgattgtggaaagaaaatatgccgaagcagcatctttgtgtcccaaattgttgcgaggatcggcatctgcatgggaaagatgggttttccactttgctcatctgcgtcagcttccagtactagtgccatatataccaacagaaaacccaagattacgtgatactgcatatgaggttgctcttgtggctattgctacaaacccatcttttcatacggagctcttgtcaactgtcagatcatggccacctgtgatttattctgcattgcctgtaatctctgctatagaacctcagctcaacacatcctccatgacagatgctcttaaggaggcactagcagagttgtatgtgattgatgggcaatatgagaaagccttttcactatatgctgatcttatgaacccaaatgtatttgccttcatcgaaaaacacaatctgtatgattcgattcgggaaaaggtcgtcccactgatgatgctggattgcaagcatgctgttcctttattgattcaaaataaggacttgattactccgtctcaagttgtcaaacaacttttgaatgcgagtgataagtgcgattccagaaattacttgcatctatatttgcattcactatttgaagtagaccctcatgctggaaaagatttccatgatatgcaggtagagctttatgcagactatgattcaaagatgctgcttccttttcttcgtagtagtcaacattatacacttgagaaggcatatgaaatttgcatcagaaaggatcttgtaaaggagcaagttttcattcttggaagaatgggaaatgcaaaacaagcccttgctataatcattaataaactaggggacattgaagaggctgttgaatttgtgagtatgcaacatgatgatgaactatgggaggaattgatccagcagtgtcttcataaacctgagatggtcggcgtgctattggagcacactgttggaaatcttgatcctctttatattgtgaatatggttcccaatggactggagattcctctgctcagggataggctagtcaaaattatcaccaattacaggactgaaacatctctaagacatgggtgcaatgacatccttaaggctgatattgtgaacctcttggtcaaatactacaatgaggcaagacatggaatttgcttgagcaatgaagaagatgaggcacgagcaaaaaggaatgatggtaggacttctcaagtggttgagaaatcatctggtgtgagaagtattgaggttaaatcaaaatcgaagggtggtgcaaggtgttgcatatgtttcgatccgttttctatacagagtgttaacgtcattgttttcttttgctgtcatgcttatcacatgacttgtcttatggattccacctacactagtggaatgaatgggagtgagatcacttccccggagagagtaacagattatgggtatgatgatagtgatgtggatgatgatggtgatcatggtccccaatcgggtggctctcgcatgcgttgtatcttatgtactactgctagtggagcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019899 GO:0030897 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033263 GO:0033365 GO:0034613 GO:0035542 GO:0042144 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048284 GO:0050789 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0097576 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Clathrin

Protein Analysis

879

Amino Acids

98.38

Weight (kDa)

5.5

Isoelectric Point (pI)

41.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08190
fragaria_vesca	FvH4_3g30370 FvH4_3g30370 FvH4_3g30370 FvH4_3g30370 FvH4_3g30370
malus_domestica	MD03G1129800.v1.1 MD11G1151700.v1.1
prunus_persica	Prupe.6G114800_v2.0.a1 Prupe.6G114800_v2.0.a1
pyrus_communis	pycom11g12380 pycom11g12390
rosa_chinensis	RchiOBHm_Chr5g0056311
rosa_laevigata	RLG00000035067 RLG00000035070 RLG00000035077 RLG00000035080 RLG00000035082
rosa_multiflora	Rmu_sc0000680.1_g000003
rosa_roxburghii	Rroxscaffold_1G00024010
rosa_rugosa	Rorug05G0298600 Rorug05G0298700 Rorug05G0298800
rosa_samantha	Rh5AG369600 Rh5BG380500 Rh5CG404000 Rh5DG393600
rosa_wichuraiana	Rw0G004390 Rw0G012630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1744
AccI	GTMKAC	1 cut(s)	1719
AccII	CGCG	1 cut(s)	771
AciI	CCGC	2 cut(s)	335, 399
AclWI	GGATC	6 cut(s)	197, 1162, 1866, 1999, 2066, 2393
AcoI	YGGCCR	2 cut(s)	1042, 1337
AcsI	RAATTY	5 cut(s)	41, 716, 1842, 1961, 2253
AcuI	CTGAAG	2 cut(s)	927, 996
AcvI	CACGTG	1 cut(s)	437
AfaI	GTAC	6 cut(s)	628, 768, 819, 926, 1215, 2620
AfiI	CCNNNNNNNGG	6 cut(s)	187, 821, 875, 1730, 2157, 2588
AflII	CTTAAG	2 cut(s)	1418, 2198
AflIII	ACRYGT	1 cut(s)	769
AhlI	ACTAGT	2 cut(s)	1216, 2486
AjiI	CACGTC	2 cut(s)	449, 740
AjnI	CCWGG	3 cut(s)	600, 691, 1044
Alw21I	GWGCWC	3 cut(s)	1012, 1317, 2055
Alw26I	GTCTC	3 cut(s)	359, 751, 1635
Alw44I	GTGCAC	1 cut(s)	1008
AlwI	GGATC	6 cut(s)	197, 1162, 1866, 1999, 2066, 2393
AoxI	GGCC	4 cut(s)	256, 575, 1042, 1337
ApaLI	GTGCAC	1 cut(s)	1008
ApeKI	GCWGC	6 cut(s)	59, 557, 882, 1028, 1124, 1789
ApoI	RAATTY	5 cut(s)	41, 716, 1842, 1961, 2253
ArsI	GACNNNNNNTTYG	2 cut(s)	2238, 2270
AseI	ATTAAT	1 cut(s)	1929
Asp700I	GAANNNNTTC	1 cut(s)	109
AspLEI	GCGC	1 cut(s)	414
AspS9I	GGNCC	2 cut(s)	323, 2579
AsuC2I	CCSGG	1 cut(s)	2519
AsuHPI	GGTGA	9 cut(s)	104, 329, 349, 674, 707, 923, 930, 2140, 2582
AvaII	GGWCC	2 cut(s)	323, 2579
BaeGI	GKGCMC	1 cut(s)	1012
BalI	TGGCCA	2 cut(s)	1044, 1339
BanII	GRGCYC	2 cut(s)	252, 1317
BauI	CACGAG	1 cut(s)	2283
BbrPI	CACGTG	1 cut(s)	437
BbsI	GAAGAC	2 cut(s)	705, 2009
Bbv12I	GWGCWC	3 cut(s)	1012, 1317, 2055
BbvCI	CCTCAGC	1 cut(s)	1386
BbvI	GCAGC	6 cut(s)	46, 569, 894, 1015, 1136, 1776
BcgI	CGANNNNNNTGC	2 cut(s)	2377, 2411
BciT130I	CCWGG	3 cut(s)	602, 693, 1046
BclI	TGATCA	3 cut(s)	406, 1090, 2572
BcnI	CCSGG	1 cut(s)	2519
BcoDI	GTCTC	3 cut(s)	359, 751, 1635
BcuI	ACTAGT	2 cut(s)	1216, 2486
BfaI	CTAG	9 cut(s)	228, 680, 1080, 1217, 1430, 1937, 2135, 2487, 2628
BfmI	CTRYAG	3 cut(s)	198, 1029, 1377
BfrI	CTTAAG	2 cut(s)	1418, 2198
BfuAI	ACCTGC	1 cut(s)	1744
BisI	GCNGC	6 cut(s)	60, 558, 883, 1029, 1125, 1790
BlsI	GCNGC	6 cut(s)	61, 559, 884, 1030, 1126, 1791
BmcAI	AGTACT	1 cut(s)	1215
Bme1390I	CCNGG	4 cut(s)	602, 693, 1046, 2519
Bme18I	GGWCC	2 cut(s)	323, 2579
BmgBI	CACGTC	2 cut(s)	449, 740
BmgT120I	GGNCC	2 cut(s)	323, 2579
BmiI	GGNNCC	3 cut(s)	324, 2097, 2581
BmrFI	CCNGG	4 cut(s)	602, 693, 1046, 2519
BmrI	ACTGGG	1 cut(s)	578
BmuI	ACTGGG	1 cut(s)	578
BpiI	GAAGAC	2 cut(s)	705, 2009
BpmI	CTGGAG	1 cut(s)	2129
Bpu10I	CCTNAGC	3 cut(s)	453, 1386, 2123
BpuEI	CTTGAG	4 cut(s)	1617, 1847, 2281, 2298
BpuMI	CCSGG	1 cut(s)	2519
BsaAI	YACGTR	2 cut(s)	437, 1253
BsaBI	GATNNNNATC	2 cut(s)	1159, 2571
BsaI	GGTCTC	1 cut(s)	751
BsaJI	CCNNGG	3 cut(s)	691, 1045, 2517
BsaXI	ACNNNNNCTCC	6 cut(s)	337, 367, 1304, 1334, 1385, 1415
Bsc4I	CCNNNNNNNGG	6 cut(s)	187, 821, 875, 1730, 2157, 2588
Bse1I	ACTGG	4 cut(s)	584, 591, 1211, 2112
Bse3DI	GCAATG	5 cut(s)	357, 501, 1358, 2194, 2272
Bse8I	GATNNNNATC	2 cut(s)	1159, 2571
BseBI	CCWGG	3 cut(s)	602, 693, 1046
BseDI	CCNNGG	3 cut(s)	691, 1045, 2517
BseGI	GGATG	6 cut(s)	490, 617, 952, 1397, 2193, 2566
BseJI	GATNNNNATC	2 cut(s)	1159, 2571
BseLI	CCNNNNNNNGG	6 cut(s)	187, 821, 875, 1730, 2157, 2588
BseMI	GCAATG	5 cut(s)	357, 501, 1358, 2194, 2272
BseMII	CTCAG	5 cut(s)	444, 888, 1400, 2019, 2137
BseNI	ACTGG	4 cut(s)	584, 591, 1211, 2112
BseSI	GKGCMC	1 cut(s)	1012
BseXI	GCAGC	6 cut(s)	46, 569, 894, 1015, 1136, 1776
Bsh1236I	CGCG	1 cut(s)	771
BshFI	GGCC	4 cut(s)	258, 577, 1044, 1339
BsiHKAI	GWGCWC	3 cut(s)	1012, 1317, 2055
BsiSI	CCGG	1 cut(s)	2519
BslFI	GGGAC	6 cut(s)	566, 1062, 1122, 1544, 1955, 2565
BslI	CCNNNNNNNGG	6 cut(s)	187, 821, 875, 1730, 2157, 2588
BsmAI	GTCTC	3 cut(s)	359, 751, 1635
BsmBI	CGTCTC	1 cut(s)	1635
BsmFI	GGGAC	6 cut(s)	566, 1062, 1122, 1544, 1955, 2565
BsmI	GAATGC	3 cut(s)	310, 1660, 1702
BsnI	GGCC	4 cut(s)	258, 577, 1044, 1339
Bso31I	GGTCTC	1 cut(s)	751
Bsp1286I	GDGCHC	4 cut(s)	252, 1012, 1317, 2055
Bsp1407I	TGTACA	1 cut(s)	817
BspACI	CCGC	2 cut(s)	335, 399
BspANI	GGCC	4 cut(s)	258, 577, 1044, 1339
BspCNI	CTCAG	5 cut(s)	445, 887, 1399, 2020, 2136
BspFNI	CGCG	1 cut(s)	771
BspLI	GGNNCC	3 cut(s)	324, 2097, 2581
BspMAI	CTGCAG	1 cut(s)	1033
BspMI	ACCTGC	1 cut(s)	1744
BspPI	GGATC	6 cut(s)	197, 1162, 1866, 1999, 2066, 2393
BspTI	CTTAAG	2 cut(s)	1418, 2198
BspTNI	GGTCTC	1 cut(s)	751
BsrDI	GCAATG	5 cut(s)	357, 501, 1358, 2194, 2272
BsrGI	TGTACA	1 cut(s)	817
BsrI	ACTGG	4 cut(s)	584, 591, 1211, 2112
BssECI	CCNNGG	3 cut(s)	691, 1045, 2517
BssSI	CACGAG	1 cut(s)	2283
Bst2BI	CACGAG	1 cut(s)	2283
Bst2UI	CCWGG	3 cut(s)	602, 693, 1046
Bst4CI	ACNGT	4 cut(s)	495, 924, 1327, 2059
Bst6I	CTCTTC	1 cut(s)	1944
BstAFI	CTTAAG	2 cut(s)	1418, 2198
BstAUI	TGTACA	1 cut(s)	817
BstBAI	YACGTR	2 cut(s)	437, 1253
BstC8I	GCNNGC	9 cut(s)	23, 252, 256, 379, 1042, 1583, 1587, 2042, 2603
BstDEI	CTNAG	9 cut(s)	74, 453, 472, 874, 1386, 2028, 2123, 2174, 2637
BstENI	CCTNNNNNAGG	1 cut(s)	873
BstF5I	GGATG	6 cut(s)	490, 617, 952, 1397, 2193, 2566
BstFNI	CGCG	1 cut(s)	771
BstHHI	GCGC	1 cut(s)	414
BstMAI	GTCTC	3 cut(s)	359, 751, 1635
BstNI	CCWGG	3 cut(s)	602, 693, 1046
BstNSI	RCATGY	3 cut(s)	335, 1589, 2605
BstSCI	CCNGG	4 cut(s)	600, 691, 1044, 2517
BstSFI	CTRYAG	3 cut(s)	198, 1029, 1377
BstSLI	GKGCMC	1 cut(s)	1012
BstUI	CGCG	1 cut(s)	771
BstV1I	GCAGC	6 cut(s)	46, 569, 894, 1015, 1136, 1776
BstV2I	GAAGAC	2 cut(s)	705, 2009
BstX2I	RGATCY	2 cut(s)	202, 1858
BstXI	CCANNNNNNTGG	2 cut(s)	2107, 2591
BstYI	RGATCY	2 cut(s)	202, 1858
BsuRI	GGCC	4 cut(s)	258, 577, 1044, 1339
BtgZI	GCGATG	1 cut(s)	161
BtrI	CACGTC	2 cut(s)	449, 740
BtsCI	GGATG	6 cut(s)	490, 617, 952, 1397, 2193, 2566
BtsI	GCAGTG	1 cut(s)	2018
BtsIMutI	CAGTG	6 cut(s)	491, 905, 920, 1562, 2018, 2055
BveI	ACCTGC	1 cut(s)	1744
Cac8I	GCNNGC	9 cut(s)	23, 252, 256, 379, 1042, 1583, 1587, 2042, 2603
CfoI	GCGC	1 cut(s)	414
Cfr13I	GGNCC	2 cut(s)	323, 2579
CseI	GACGC	1 cut(s)	1190
CsiI	ACCWGGT	1 cut(s)	600
Csp6I	GTAC	6 cut(s)	627, 767, 818, 925, 1214, 2619
CspCI	CAANNNNNGTGG	2 cut(s)	930, 965
CviQI	GTAC	6 cut(s)	627, 767, 818, 925, 1214, 2619
DdeI	CTNAG	9 cut(s)	74, 453, 472, 874, 1386, 2028, 2123, 2174, 2637
DraI	TTTAAA	1 cut(s)	295
EaeI	YGGCCR	2 cut(s)	1042, 1337
Eam1104I	CTCTTC	1 cut(s)	1944
EarI	CTCTTC	1 cut(s)	1944
Ecl136II	GAGCTC	1 cut(s)	1315
Eco147I	AGGCCT	1 cut(s)	577
Eco24I	GRGCYC	2 cut(s)	252, 1317
Eco31I	GGTCTC	1 cut(s)	751
Eco47I	GGWCC	2 cut(s)	323, 2579
Eco53kI	GAGCTC	1 cut(s)	1315
Eco57I	CTGAAG	2 cut(s)	927, 996
Eco72I	CACGTG	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	1315
EcoNI	CCTNNNNNAGG	1 cut(s)	873
EcoRII	CCWGG	3 cut(s)	600, 691, 1044
EcoT38I	GRGCYC	2 cut(s)	252, 1317
Esp3I	CGTCTC	1 cut(s)	1635
FaqI	GGGAC	6 cut(s)	566, 1062, 1122, 1544, 1955, 2565
FauNDI	CATATG	3 cut(s)	1264, 1837, 2390
FbaI	TGATCA	3 cut(s)	406, 1090, 2572
FblI	GTMKAC	1 cut(s)	1719
Fnu4HI	GCNGC	6 cut(s)	60, 558, 883, 1029, 1125, 1790
FokI	GGATG	6 cut(s)	497, 604, 959, 1384, 2180, 2573
FriOI	GRGCYC	2 cut(s)	252, 1317
Fsp4HI	GCNGC	6 cut(s)	60, 558, 883, 1029, 1125, 1790
FspBI	CTAG	9 cut(s)	228, 680, 1080, 1217, 1430, 1937, 2135, 2487, 2628
GlaI	GCGC	1 cut(s)	413
GluI	GCNGC	6 cut(s)	60, 558, 883, 1029, 1125, 1790
GsuI	CTGGAG	1 cut(s)	2129
HaeIII	GGCC	4 cut(s)	258, 577, 1044, 1339
HapII	CCGG	1 cut(s)	2519
HgaI	GACGC	1 cut(s)	1190
HhaI	GCGC	1 cut(s)	414
Hin6I	GCGC	1 cut(s)	412
HinP1I	GCGC	1 cut(s)	412
HincII	GTYRAC	3 cut(s)	1323, 1814, 2422
HindII	GTYRAC	3 cut(s)	1323, 1814, 2422
HindIII	AAGCTT	1 cut(s)	1020
HinfI	GANTC	8 cut(s)	665, 1538, 1543, 1603, 1673, 1778, 2113, 2474
HpaI	GTTAAC	1 cut(s)	2422
HpaII	CCGG	1 cut(s)	2519
HphI	GGTGA	9 cut(s)	104, 329, 349, 674, 707, 923, 930, 2140, 2582
Hpy166II	GTNNAC	7 cut(s)	1010, 1058, 1323, 1720, 1814, 2215, 2422
Hpy188I	TCNGA	3 cut(s)	115, 1331, 1853
Hpy188III	TCNNGA	9 cut(s)	206, 228, 452, 645, 1064, 1080, 1547, 1677, 2069
Hpy8I	GTNNAC	7 cut(s)	1010, 1058, 1323, 1720, 1814, 2215, 2422
HpyAV	CCTTC	8 cut(s)	83, 181, 706, 821, 902, 1522, 1825, 2362
HpyCH4III	ACNGT	4 cut(s)	495, 924, 1327, 2059
HpyCH4IV	ACGT	5 cut(s)	436, 448, 739, 1252, 2424
HpyF3I	CTNAG	9 cut(s)	74, 453, 472, 874, 1386, 2028, 2123, 2174, 2637
HpySE526I	ACGT	5 cut(s)	436, 448, 739, 1252, 2424
HspAI	GCGC	1 cut(s)	412
Ksp22I	TGATCA	3 cut(s)	406, 1090, 2572
KspAI	GTTAAC	1 cut(s)	2422
LmnI	GCTCC	6 cut(s)	468, 871, 1312, 1870, 2050, 2633
Lsp1109I	GCAGC	6 cut(s)	46, 569, 894, 1015, 1136, 1776
MabI	ACCWGGT	1 cut(s)	600
MaeI	CTAG	9 cut(s)	228, 680, 1080, 1217, 1430, 1937, 2135, 2487, 2628
MaeII	ACGT	5 cut(s)	436, 448, 739, 1252, 2424
MaeIII	GTNAC	2 cut(s)	775, 2527
MfeI	CAATTG	1 cut(s)	26
MflI	RGATCY	2 cut(s)	202, 1858
MhlI	GDGCHC	4 cut(s)	252, 1012, 1317, 2055
MlsI	TGGCCA	2 cut(s)	1044, 1339
MluI	ACGCGT	1 cut(s)	769
MluNI	TGGCCA	2 cut(s)	1044, 1339
MmeI	TCCRAC	1 cut(s)	2041
Mox20I	TGGCCA	2 cut(s)	1044, 1339
MroXI	GAANNNNTTC	1 cut(s)	109
MscI	TGGCCA	2 cut(s)	1044, 1339
MseI	TTAA	6 cut(s)	294, 1419, 1929, 2199, 2355, 2421
MslI	CAYNNNNRTG	4 cut(s)	315, 1132, 1165, 1983
Msp20I	TGGCCA	2 cut(s)	1044, 1339
MspCI	CTTAAG	2 cut(s)	1418, 2198
MspI	CCGG	1 cut(s)	2519
MspR9I	CCNGG	4 cut(s)	602, 693, 1046, 2519
MunI	CAATTG	1 cut(s)	26
Mva1269I	GAATGC	3 cut(s)	310, 1660, 1702
MvaI	CCWGG	3 cut(s)	602, 693, 1046
MvnI	CGCG	1 cut(s)	771
NciI	CCSGG	1 cut(s)	2519
NdeI	CATATG	3 cut(s)	1264, 1837, 2390
NlaIV	GGNNCC	3 cut(s)	324, 2097, 2581
NmuCI	GTSAC	1 cut(s)	775
NspI	RCATGY	3 cut(s)	335, 1589, 2605
PaeI	GCATGC	2 cut(s)	1589, 2605
PceI	AGGCCT	1 cut(s)	577
PctI	GAATGC	3 cut(s)	310, 1660, 1702
PdmI	GAANNNNTTC	1 cut(s)	109
PfeI	GAWTC	8 cut(s)	665, 1538, 1543, 1603, 1673, 1778, 2113, 2474
PkrI	GCNGC	6 cut(s)	61, 559, 884, 1030, 1126, 1791
PmaCI	CACGTG	1 cut(s)	437
PmlI	CACGTG	1 cut(s)	437
Ppu21I	YACGTR	2 cut(s)	437, 1253
PshBI	ATTAAT	1 cut(s)	1929
Psp124BI	GAGCTC	1 cut(s)	1317
Psp6I	CCWGG	3 cut(s)	600, 691, 1044
PspCI	CACGTG	1 cut(s)	437
PspGI	CCWGG	3 cut(s)	600, 691, 1044
PspN4I	GGNNCC	3 cut(s)	324, 2097, 2581
PspPI	GGNCC	2 cut(s)	323, 2579
PstI	CTGCAG	1 cut(s)	1033
PsuI	RGATCY	2 cut(s)	202, 1858
RsaI	GTAC	6 cut(s)	628, 768, 819, 926, 1215, 2620
RsaNI	GTAC	6 cut(s)	627, 767, 818, 925, 1214, 2619
RseI	CAYNNNNRTG	4 cut(s)	315, 1132, 1165, 1983
SacI	GAGCTC	1 cut(s)	1317
SaqAI	TTAA	6 cut(s)	294, 1419, 1929, 2199, 2355, 2421
SatI	GCNGC	6 cut(s)	60, 558, 883, 1029, 1125, 1790
Sau96I	GGNCC	2 cut(s)	323, 2579
ScaI	AGTACT	1 cut(s)	1215
ScrFI	CCNGG	4 cut(s)	602, 693, 1046, 2519
SduI	GDGCHC	4 cut(s)	252, 1012, 1317, 2055
SexAI	ACCWGGT	1 cut(s)	600
SfcI	CTRYAG	3 cut(s)	198, 1029, 1377
SinI	GGWCC	2 cut(s)	323, 2579
SmiMI	CAYNNNNRTG	4 cut(s)	315, 1132, 1165, 1983
SmlI	CTYRAG	6 cut(s)	1418, 1632, 1826, 2198, 2260, 2313
SmoI	CTYRAG	6 cut(s)	1418, 1632, 1826, 2198, 2260, 2313
SpeI	ACTAGT	2 cut(s)	1216, 2486
SphI	GCATGC	2 cut(s)	1589, 2605
SseBI	AGGCCT	1 cut(s)	577
SsiI	CCGC	2 cut(s)	335, 399
SspMI	CTAG	9 cut(s)	228, 680, 1080, 1217, 1430, 1937, 2135, 2487, 2628
SstI	GAGCTC	1 cut(s)	1317
StuI	AGGCCT	1 cut(s)	577
StyD4I	CCNGG	4 cut(s)	600, 691, 1044, 2517
TaaI	ACNGT	4 cut(s)	495, 924, 1327, 2059
TaiI	ACGT	5 cut(s)	439, 451, 742, 1255, 2427
TaqI	TCGA	4 cut(s)	1518, 1541, 2366, 2397
TatI	WGTACW	4 cut(s)	817, 924, 1213, 2618
TfiI	GAWTC	8 cut(s)	665, 1538, 1543, 1603, 1673, 1778, 2113, 2474
Tru1I	TTAA	6 cut(s)	294, 1419, 1929, 2199, 2355, 2421
Tru9I	TTAA	6 cut(s)	294, 1419, 1929, 2199, 2355, 2421
TscAI	CASTG	6 cut(s)	498, 905, 927, 1569, 2018, 2062
TseFI	GTSAC	1 cut(s)	775
TseI	GCWGC	6 cut(s)	59, 557, 882, 1028, 1124, 1789
Tsp45I	GTSAC	1 cut(s)	775
TspGWI	ACGGA	3 cut(s)	1325, 1617, 2391
TspRI	CASTG	6 cut(s)	498, 905, 927, 1569, 2018, 2062
Vha464I	CTTAAG	2 cut(s)	1418, 2198
VneI	GTGCAC	1 cut(s)	1008
VpaK11BI	GGWCC	2 cut(s)	323, 2579
VspI	ATTAAT	1 cut(s)	1929
XagI	CCTNNNNNAGG	1 cut(s)	873
XapI	RAATTY	5 cut(s)	41, 716, 1842, 1961, 2253
XbaI	TCTAGA	2 cut(s)	227, 1079
XceI	RCATGY	3 cut(s)	335, 1589, 2605
XmiI	GTMKAC	1 cut(s)	1719
XmnI	GAANNNNTTC	1 cut(s)	109
XspI	CTAG	9 cut(s)	228, 680, 1080, 1217, 1430, 1937, 2135, 2487, 2628
ZrmI	AGTACT	1 cut(s)	1215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.