Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005429

Physical Location & Seq

Genomic Coordinates Reverse (-)

60469074 .. 60471477

Gene Structure 2404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035080

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGCTTTGGCAGGTCGTCCCACTGATGAGGCTGGATTGCAAGCACGCTGTTCCTTTATTGATTCAAAATAAGGACTTGATTACTCCATCTCAAGTTGTCAAACAACTTTTGAATGCGAGTGATAAGTGCGATTCCAAAAATTACTGGCATCTATATTTGCATTCACTATTTGAAGTAAACCCTCATGCTGGAAAAGATTTCCATGATATGCAGGTAGAGCCTTATGCAAACTATGATTCAAAGATGCTGCTTCCTTTTCTTCGTAGGAATCAACATTATACACTTGAGAAGGCATATGGAATTTGCATCAGAAATGATCTTGGAAGAATGGGAAATGCAAAACAAGCCCTTGCTATAATCATTAATAAACTAGGGGACATTGAAGAGCTATGGGAGGAATTGATCCAGCAGTGTCCTCATAAACCAGAGATGGTCGGCGTGCTATTGGAGCACACTGTTGGAAATCTTGATCCTCTTTATATTGTGAATATGGTTCCCAATGGACTGGAGATTCCTCTATCAAAATTTTCATTTACCCTTTGTAATTTACTTTGCAGGCTCAGGGATAGGCGAGTCAAAATTATCACCAATTACAGGTCTGAAACATCTCTAAAACATGGGTGCAATGACATCCTTACGGCTGATATTGTGAACCTCTTGGTCAAACACTACAATGAGACAAGACATCGAATTTACTTGTGCAATGAAGAAGATGAGGCACTAGCAAAAAGGAATGATGGTAGGACTTCTCAAGTGATTGAGAAATCATCACCTGGTGTGAGAAATTCCACCTACACTACTGGAATGAATGGGAGTGGGATCACTTCCCCGGAGAAAGTAACAGATTATGGGTATGATGATAGTGATGTGGATGATGATGGTGATGATGGTCCCCAATCAGGTGGCTCTCGCATGCGTTGTTTCCCATGTACTACTGCTAATGGAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019899 GO:0030897 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033263 GO:0033365 GO:0034613 GO:0035542 GO:0042144 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048284 GO:0050789 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0097576 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Clathrin

Protein Analysis

317

Amino Acids

35.87

Weight (kDa)

6.0

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_Vps41	PF23556	4 - 163	1.8e-51	Vps41 TPR-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08190
fragaria_vesca	FvH4_3g30370 FvH4_3g30370 FvH4_3g30370 FvH4_3g30370 FvH4_3g30370
malus_domestica	MD03G1129800.v1.1 MD11G1151700.v1.1
prunus_persica	Prupe.6G114800_v2.0.a1 Prupe.6G114800_v2.0.a1
pyrus_communis	pycom11g12380 pycom11g12390
rosa_chinensis	RchiOBHm_Chr5g0056311
rosa_laevigata	RLG00000035067 RLG00000035070 RLG00000035077 RLG00000035080 RLG00000035082
rosa_multiflora	Rmu_sc0000680.1_g000003
rosa_roxburghii	Rroxscaffold_1G00024010
rosa_rugosa	Rorug05G0298600 Rorug05G0298700 Rorug05G0298800
rosa_samantha	Rh5AG369600 Rh5BG380500 Rh5CG404000 Rh5DG393600
rosa_wichuraiana	Rw0G004390 Rw0G012630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	202
AclWI	GGATC	3 cut(s)	397, 464, 827
AcsI	RAATTY	4 cut(s)	300, 524, 690, 784
AdeI	CACNNNGTG	1 cut(s)	776
AfaI	GTAC	1 cut(s)	931
AfiI	CCNNNNNNNGG	3 cut(s)	188, 594, 899
AgsI	TTSAA	5 cut(s)	65, 112, 173, 240, 383
AjnI	CCWGG	1 cut(s)	772
AluBI	AGCT	1 cut(s)	388
AluI	AGCT	1 cut(s)	388
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	1 cut(s)	671
AlwI	GGATC	3 cut(s)	397, 464, 827
ApeKI	GCWGC	1 cut(s)	247
ApoI	RAATTY	4 cut(s)	300, 524, 690, 784
AseI	ATTAAT	1 cut(s)	363
AspS9I	GGNCC	1 cut(s)	890
AsuC2I	CCSGG	1 cut(s)	830
AsuHPI	GGTGA	3 cut(s)	577, 762, 893
AvaII	GGWCC	1 cut(s)	890
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	1 cut(s)	234
BccI	CCATC	5 cut(s)	94, 424, 731, 872, 881
BceAI	ACGGC	1 cut(s)	654
BciT130I	CCWGG	1 cut(s)	774
BcnI	CCSGG	1 cut(s)	830
BcoDI	GTCTC	1 cut(s)	671
BfaI	CTAG	2 cut(s)	371, 722
BfuAI	ACCTGC	1 cut(s)	202
BisI	GCNGC	1 cut(s)	248
BlsI	GCNGC	1 cut(s)	249
Bme1390I	CCNGG	2 cut(s)	774, 830
Bme18I	GGWCC	1 cut(s)	890
BmgT120I	GGNCC	1 cut(s)	890
BmiI	GGNNCC	2 cut(s)	495, 892
BmrFI	CCNGG	2 cut(s)	774, 830
BmsI	GCATC	3 cut(s)	157, 234, 315
BpmI	CTGGAG	1 cut(s)	527
Bpu10I	CCTNAGC	1 cut(s)	560
BpuEI	CTTGAG	3 cut(s)	75, 305, 735
BpuMI	CCSGG	1 cut(s)	830
BsaJI	CCNNGG	1 cut(s)	828
Bsc4I	CCNNNNNNNGG	3 cut(s)	188, 594, 899
Bse1I	ACTGG	3 cut(s)	149, 510, 805
Bse3DI	GCAATG	2 cut(s)	631, 709
BseBI	CCWGG	1 cut(s)	774
BseDI	CCNNGG	1 cut(s)	828
BseGI	GGATG	2 cut(s)	630, 877
BseLI	CCNNNNNNNGG	3 cut(s)	188, 594, 899
BseMI	GCAATG	2 cut(s)	631, 709
BseMII	CTCAG	1 cut(s)	574
BseNI	ACTGG	3 cut(s)	149, 510, 805
BseXI	GCAGC	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	453
BsiSI	CCGG	1 cut(s)	830
BslFI	GGGAC	3 cut(s)	2, 389, 876
BslI	CCNNNNNNNGG	3 cut(s)	188, 594, 899
BsmAI	GTCTC	1 cut(s)	671
BsmFI	GGGAC	3 cut(s)	2, 389, 876
BsmI	GAATGC	2 cut(s)	118, 160
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp143I	GATC	4 cut(s)	316, 402, 469, 819
BspCNI	CTCAG	1 cut(s)	573
BspLI	GGNNCC	2 cut(s)	495, 892
BspMI	ACCTGC	1 cut(s)	202
BspPI	GGATC	3 cut(s)	397, 464, 827
BspQI	GCTCTTC	1 cut(s)	378
BsrDI	GCAATG	2 cut(s)	631, 709
BsrI	ACTGG	3 cut(s)	149, 510, 805
BssECI	CCNNGG	1 cut(s)	828
BssMI	GATC	4 cut(s)	316, 402, 469, 819
Bst2UI	CCWGG	1 cut(s)	774
Bst4CI	ACNGT	1 cut(s)	457
Bst6I	CTCTTC	1 cut(s)	378
BstC8I	GCNNGC	5 cut(s)	41, 45, 440, 557, 914
BstDEI	CTNAG	2 cut(s)	560, 948
BstF5I	GGATG	2 cut(s)	630, 877
BstKTI	GATC	4 cut(s)	319, 405, 472, 822
BstMAI	GTCTC	1 cut(s)	671
BstMBI	GATC	4 cut(s)	316, 402, 469, 819
BstMWI	GCNNNNNNNGC	3 cut(s)	217, 344, 448
BstNI	CCWGG	1 cut(s)	774
BstNSI	RCATGY	1 cut(s)	916
BstSCI	CCNGG	2 cut(s)	772, 828
BstV1I	GCAGC	1 cut(s)	234
BstXI	CCANNNNNNTGG	2 cut(s)	505, 902
BtsCI	GGATG	2 cut(s)	630, 877
BtsI	GCAGTG	1 cut(s)	416
BtsIMutI	CAGTG	3 cut(s)	20, 416, 453
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	5 cut(s)	41, 45, 440, 557, 914
Cfr13I	GGNCC	1 cut(s)	890
CsiI	ACCWGGT	1 cut(s)	772
Csp6I	GTAC	1 cut(s)	930
CviAII	CATG	5 cut(s)	185, 203, 617, 913, 927
CviJI	RGCY	7 cut(s)	31, 220, 347, 388, 559, 641, 906
CviKI_1	RGCY	7 cut(s)	31, 220, 347, 388, 559, 641, 906
CviQI	GTAC	1 cut(s)	930
DdeI	CTNAG	2 cut(s)	560, 948
DpnI	GATC	4 cut(s)	318, 404, 471, 821
DpnII	GATC	4 cut(s)	316, 402, 469, 819
DraIII	CACNNNGTG	1 cut(s)	776
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco47I	GGWCC	1 cut(s)	890
EcoRII	CCWGG	1 cut(s)	772
FaeI	CATG	5 cut(s)	188, 206, 620, 916, 930
FaqI	GGGAC	3 cut(s)	2, 389, 876
FatI	CATG	5 cut(s)	184, 202, 616, 912, 926
FauNDI	CATATG	1 cut(s)	295
Fnu4HI	GCNGC	1 cut(s)	248
FokI	GGATG	2 cut(s)	617, 884
Fsp4HI	GCNGC	1 cut(s)	248
FspBI	CTAG	2 cut(s)	371, 722
GluI	GCNGC	1 cut(s)	248
GsuI	CTGGAG	1 cut(s)	527
HapII	CCGG	1 cut(s)	830
Hin1II	CATG	5 cut(s)	188, 206, 620, 916, 930
HinfI	GANTC	6 cut(s)	61, 131, 236, 268, 511, 573
HpaII	CCGG	1 cut(s)	830
HphI	GGTGA	3 cut(s)	577, 762, 893
Hpy166II	GTNNAC	2 cut(s)	178, 652
Hpy188I	TCNGA	2 cut(s)	311, 601
Hpy188III	TCNNGA	1 cut(s)	467
Hpy8I	GTNNAC	2 cut(s)	178, 652
HpyAV	CCTTC	1 cut(s)	283
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4V	TGCA	9 cut(s)	39, 160, 211, 227, 306, 338, 555, 624, 702
HpyF10VI	GCNNNNNNNGC	3 cut(s)	217, 344, 448
HpyF3I	CTNAG	2 cut(s)	560, 948
Hsp92II	CATG	5 cut(s)	188, 206, 620, 916, 930
Kzo9I	GATC	4 cut(s)	316, 402, 469, 819
LguI	GCTCTTC	1 cut(s)	378
LmnI	GCTCC	1 cut(s)	448
Lsp1109I	GCAGC	1 cut(s)	234
LweI	GCATC	3 cut(s)	157, 234, 315
MabI	ACCWGGT	1 cut(s)	772
MaeI	CTAG	2 cut(s)	371, 722
MaeIII	GTNAC	1 cut(s)	838
MalI	GATC	4 cut(s)	318, 404, 471, 821
MboI	GATC	4 cut(s)	316, 402, 469, 819
MboII	GAAGA	5 cut(s)	251, 336, 395, 719, 722
MhlI	GDGCHC	1 cut(s)	453
MluCI	AATT	9 cut(s)	139, 300, 398, 524, 544, 579, 589, 690, 784
MlyI	GAGTC	1 cut(s)	582
MmeI	TCCRAC	1 cut(s)	439
MnlI	CCTC	8 cut(s)	21, 192, 388, 426, 483, 525, 665, 709
MseI	TTAA	1 cut(s)	363
MslI	CAYNNNNRTG	1 cut(s)	672
MspI	CCGG	1 cut(s)	830
MspR9I	CCNGG	2 cut(s)	774, 830
Mva1269I	GAATGC	2 cut(s)	118, 160
MvaI	CCWGG	1 cut(s)	774
MwoI	GCNNNNNNNGC	3 cut(s)	217, 344, 448
NciI	CCSGG	1 cut(s)	830
NdeI	CATATG	1 cut(s)	295
NdeII	GATC	4 cut(s)	316, 402, 469, 819
NlaIII	CATG	5 cut(s)	188, 206, 620, 916, 930
NlaIV	GGNNCC	2 cut(s)	495, 892
NspI	RCATGY	1 cut(s)	916
PaeI	GCATGC	1 cut(s)	916
PciSI	GCTCTTC	1 cut(s)	378
PctI	GAATGC	2 cut(s)	118, 160
PfeI	GAWTC	5 cut(s)	61, 131, 236, 268, 511
PkrI	GCNGC	1 cut(s)	249
PleI	GAGTC	1 cut(s)	581
PpsI	GAGTC	1 cut(s)	581
PshBI	ATTAAT	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	772
PspGI	CCWGG	1 cut(s)	772
PspN4I	GGNNCC	2 cut(s)	495, 892
PspPI	GGNCC	1 cut(s)	890
RsaI	GTAC	1 cut(s)	931
RsaNI	GTAC	1 cut(s)	930
RseI	CAYNNNNRTG	1 cut(s)	672
SapI	GCTCTTC	1 cut(s)	378
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	1 cut(s)	248
Sau3AI	GATC	4 cut(s)	316, 402, 469, 819
Sau96I	GGNCC	1 cut(s)	890
SchI	GAGTC	1 cut(s)	582
ScrFI	CCNGG	2 cut(s)	774, 830
SduI	GDGCHC	1 cut(s)	453
SetI	ASST	8 cut(s)	15, 216, 390, 599, 657, 775, 794, 904
SexAI	ACCWGGT	1 cut(s)	772
SfaNI	GCATC	3 cut(s)	157, 234, 315
SinI	GGWCC	1 cut(s)	890
SmiMI	CAYNNNNRTG	1 cut(s)	672
SmlI	CTYRAG	3 cut(s)	90, 284, 750
SmoI	CTYRAG	3 cut(s)	90, 284, 750
SphI	GCATGC	1 cut(s)	916
Sse9I	AATT	9 cut(s)	139, 300, 398, 524, 544, 579, 589, 690, 784
SspMI	CTAG	2 cut(s)	371, 722
StyD4I	CCNGG	2 cut(s)	772, 828
TaaI	ACNGT	1 cut(s)	457
TaqI	TCGA	1 cut(s)	688
TasI	AATT	9 cut(s)	139, 300, 398, 524, 544, 579, 589, 690, 784
TatI	WGTACW	1 cut(s)	929
TfiI	GAWTC	5 cut(s)	61, 131, 236, 268, 511
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	3 cut(s)	27, 416, 460
TseI	GCWGC	1 cut(s)	247
TspDTI	ATGAA	3 cut(s)	519, 720, 821
TspRI	CASTG	3 cut(s)	27, 416, 460
VpaK11BI	GGWCC	1 cut(s)	890
VspI	ATTAAT	1 cut(s)	363
XapI	RAATTY	4 cut(s)	300, 524, 690, 784
XceI	RCATGY	1 cut(s)	916
XspI	CTAG	2 cut(s)	371, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.