Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0005429

Physical Location & Seq

Genomic Coordinates Forward (+)

12663868 .. 12678350

Gene Structure 14483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1129800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2874 bp

ATGGCTCCGATTCCGCCCGATAACGGCGTCGAAGGAGACGATGAGAGAGAGGAAGAGGGCGAGGAGGAAGAAGAAGAGGAAGAGGAAGAAGAGGAGGAGGAGGAAGAGGAGGAGCCGAGGCTCAAGTACCAGCGAATGGGAGGCAGCATTCCCACGCTGTTGGCTAGCGACGTGGCGTCCTGCATCGCCGTCGCGGAACGAATGATCGCGCTCGGGACTCACGGCGGCACCGTTCATATTCTCGATTTTCTCGGGAATCAGGTTAAGGAATTCCCTGCTCATACTGCTGCAGTGAATGATCTTAGCTTCGACATAGAAGGTGAATTTATAGGAAGCTGTTCAGACGATGGGTCTGTTGTAATAAATAGTCTTTTCACTGATGAGAAAATGAAGTTTGAGTATCATCGTCCAATGAAAGCTATTGCACTAGACCCAGATTATGCAAGAAGATCATCTAGAAGATTTGTAGCTGGTGGTTTAGCTGGTCATTTATATTTTAATACAAAAAGATGGCTGGGCTTTAAAGATCAGGTTTTGCACTCTGGTGAAGGTCCTATACATGCGGTGAAGTGGAGAACAAGTCTCATTGCCTGGGCAAATGATGCAGGTGTTAAAGTGTACGATACTGCAAATGATCAACGTATAACATTCATTGAAAGGCCACGAGGAAGCCCACGTCCTGAGCTTTTGCTCCCTCACTTATTTTGGCAGGATGACTCATTGTTGGTCATTGGCTGGGGAACATCAATCAAAATCACATCGATAAAAACAAATCAATCAAGAGCCACCAATGGAACATATAAGCATGTCCCAATGTCTGGTATGAACCAGGTGGATATTGTGGCATCCTTTCAGACCAGCTATTTCATTTCCGGGATTGCCCCTTTTGGTGATACTTTGGTCATTCTAGCATATATCCCTGGTGAAGAAGATGGGGAAAAGGAATTTAGCAGCTCTGTTCCATCACGACAGGGAAATGCACAGAGACCAGAAGTACGTATTGTAACATGGAATAATGATGAACTTTCAACAGATGCCTTACCTGTACACGGCTTTGAGCATTACAAGGCAAAGGACTATTCCCTTGCTCACGCTCCTTTCTCAGGTAGCAGCTATGCTGGCGGCCGGTGGGCTGAAGGTGATGAACCACTGTACTATATTGTTTCCCCAAGGGATGTAGTCATTGCAAAACCAAGAGATGCTGAAGATCATATTGCTTGGCTTCTTCAACATGGTTGGCATGAAAAAGCTTTGGCTGCAGTTGAAGCAGGCCAGGGACGGAGTGAACTTCTTGATGAGGTTGGTTCTAGATACCTTGATCATATGATTGTGGAAAGAAAATATGCTGAAGCCGCATCTGTATGTCCTAAATTGTTGCGAGGATCTGCTTCGGCATGGGAAAGATGGGTTTTCCACTTTGCTCATTTGCGTCAGCTTCCAGTATTAGTCCCATACATTCCAACAGAAAACCCAAGACTTCGTGATACTGCTTATGAGGTTGCTCTTGTAGCTCTCGCTACAAATCCATCTTTTCATAAGGAGCTTTTGTCAACTGTTAAATCTTGGCCACCCGTGATCTACTCTTCATTGCCTGTTATCTCAGCTATAGAACCTCAGCTTAATACATCATCCATGACAGATGCCCTTAAGGAGGCACTAGCAGTGTTGTATGAGATTGATGGGCAATATGAGAAAGCATTTGCACTATATGCTGATCTTTTGAAGCCAGACATATTTTCCTTCATTGAAAAGCACAATTTGTATGATTCTATTCGGGAAAAGGTTGTCCAGTTAATGATGCTAGATTGCAAGCTTGCAGTTCCTTTGTTGATCCAAAACAAGGATTTAATAACTCCATCTGAAGTTGTTAAACAACTTTTGAATGCAATTGATAAGTGTGATTCCAGATATTTCTTGAAGCAGATCCTCATTCTGGAAAAGAATATCACGATATGCAGTGAAAGATTGAAACTGAAACTGCAGGTAGAGCTTTATGCAGAATATGATCCAAAGATGCTTCTTCCTTTTCTTCGTAGTAGTCAACATTATACCCTGGAGAAGGCATATGAAATTTGTATTGGAAGAGATCTTTTAAGGGAGCAAGTGTTCATTCTTGGAAGAATGGGAAATGCTAAACAAGCCCTTGCTGTAATCATAAATAAACTTGGGGATATTGAAGAGGCTGTAGAATTTGTAAATATGCAACATGATGATGAACTCTGGGAGGAGTTAATCCAGCAGTGTCTTGATAAACCTGAAATGGTGGGCGTGTTATTGGAGCACACAGTTGGAAACCTAGATCCTCTCTATATTGTGAATATGGTTCCCAACGGATTGGAGATTCCTAGGCTCAGGGATCGATTAGTCAAAATCGTCACCAATTACAGGACTGAAACATCTTTAAGGCATGGGTGCAATGATATTCTCAAGGCTGATATTGTCAACCTCTTGGTCAAATACTACAAAGAGGCAACACATGGAATTTACTTGAGCAATGAAGAAGATGAGGCACGGTCAAAGAGAAATGATAGTAGGGCTTCTCAGGTGATCGAAAAATCGGTAGGTGTGAGAAGTATGGAGGTTAAGTCAAAACCCAGGGGCGGTGCAAGGTGTTGCATGTGTTTCGATCCTTTTTCTATACAAAGTGTTAATGTCATTGTTTTCTTTTGCTGTCATGCTTATCACATGACTTGTCTTATGGATTCCACCTATACGAGTGAAATGAAAGGGAGTGTGGCCACTCCTAGTGAGAGAGTAGACGATTATGGGTATGACGACAGTGATGTGGATGACAATGGTGATGATGATACCCAATCGGGTGGTTCCCGTATGCGTTGTATCTTATGTACTACTGCTGCTAGTGGAGTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019899 GO:0030897 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033263 GO:0033365 GO:0034613 GO:0035542 GO:0042144 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048284 GO:0050789 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0097576 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Clathrin

Protein Analysis

958

Amino Acids

107.66

Weight (kDa)

5.03

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Vps41	PF23411	41 - 397	1.4e-98	Vps42 beta-propeller
TPR_Vps41	PF23556	433 - 773	1.2e-133	Vps41 TPR-like region
Clathrin	PF00637	662 - 752	2e-09	Region in Clathrin and VPS
zf-RING_Vps41	PF23555	870 - 909	1.3e-12	Vps41 C-terminal RING finger domain
zf_RING_Vps8	PF23412	871 - 910	1e-05	Vps8 RING zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08190
fragaria_vesca	FvH4_3g30370 FvH4_3g30370 FvH4_3g30370 FvH4_3g30370 FvH4_3g30370
malus_domestica	MD03G1129800.v1.1 MD11G1151700.v1.1
prunus_persica	Prupe.6G114800_v2.0.a1 Prupe.6G114800_v2.0.a1
pyrus_communis	pycom11g12380 pycom11g12390
rosa_chinensis	RchiOBHm_Chr5g0056311
rosa_laevigata	RLG00000035067 RLG00000035070 RLG00000035077 RLG00000035080 RLG00000035082
rosa_multiflora	Rmu_sc0000680.1_g000003
rosa_roxburghii	Rroxscaffold_1G00024010
rosa_rugosa	Rorug05G0298600 Rorug05G0298700 Rorug05G0298800
rosa_samantha	Rh5AG369600 Rh5BG380500 Rh5CG404000 Rh5DG393600
rosa_wichuraiana	Rw0G004390 Rw0G012630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	596
Acc36I	ACCTGC	2 cut(s)	596, 1972
AccB1I	GGYRCC	1 cut(s)	227
AccB7I	CCANNNNNTGG	2 cut(s)	136, 818
AccI	GTMKAC	1 cut(s)	2757
AccII	CGCG	2 cut(s)	194, 209
AciI	CCGC	7 cut(s)	14, 194, 225, 563, 1122, 1353, 2601
AclWI	GGATC	7 cut(s)	1390, 1825, 1918, 2000, 2294, 2364, 2621
AcoI	YGGCCR	3 cut(s)	1123, 1565, 2736
AcsI	RAATTY	6 cut(s)	269, 323, 944, 2070, 2189, 2481
AcuI	CTGAAG	4 cut(s)	1155, 1224, 1368, 1881
AcyI	GRCGYC	2 cut(s)	27, 176
AfaI	GTAC	6 cut(s)	128, 620, 996, 1047, 1154, 2848
AflII	CTTAAG	1 cut(s)	1646
AhdI	GACNNNNNGTC	2 cut(s)	175, 349
AjiI	CACGTC	2 cut(s)	172, 677
AjnI	CCWGG	6 cut(s)	590, 828, 919, 1272, 2052, 2594
AjuI	GAANNNNNNNTTGG	2 cut(s)	2061, 2093
AleI	CACNNNNGTG	1 cut(s)	543
AloI	GAACNNNNNNTCC	2 cut(s)	2090, 2122
Alw21I	GWGCWC	1 cut(s)	2283
Alw26I	GTCTC	3 cut(s)	30, 587, 979
AlwI	GGATC	7 cut(s)	1390, 1825, 1918, 2000, 2294, 2364, 2621
Ama87I	CYCGRG	2 cut(s)	212, 251
AoxI	GGCC	5 cut(s)	659, 1123, 1270, 1565, 2736
ApeKI	GCWGC	6 cut(s)	144, 287, 951, 1110, 1256, 2855
ApoI	RAATTY	6 cut(s)	269, 323, 944, 2070, 2189, 2481
Asp700I	GAANNNNTTC	1 cut(s)	337
AspA2I	CCTAGG	1 cut(s)	2345
AspLEI	GCGC	1 cut(s)	211
AspS9I	GGNCC	1 cut(s)	551
AsuC2I	CCSGG	1 cut(s)	874
AsuHPI	GGTGA	9 cut(s)	332, 557, 577, 902, 935, 1151, 2368, 2557, 2810
AsuNHI	GCTAGC	1 cut(s)	164
AvaI	CYCGRG	2 cut(s)	212, 251
AvaII	GGWCC	1 cut(s)	551
AvrII	CCTAGG	1 cut(s)	2345
BaeI	ACNNNNGTAYC	2 cut(s)	885, 918
BalI	TGGCCA	2 cut(s)	1567, 2738
BanI	GGYRCC	1 cut(s)	227
BarI	GAAGNNNNNNTAC	2 cut(s)	540, 572
BauI	CACGAG	1 cut(s)	663
Bbv12I	GWGCWC	1 cut(s)	2283
BbvCI	CCTCAGC	1 cut(s)	1614
BbvI	GCAGC	6 cut(s)	156, 274, 963, 1122, 1243, 2842
BccI	CCATC	8 cut(s)	341, 504, 926, 970, 1398, 1534, 1673, 1864
BceAI	ACGGC	4 cut(s)	40, 173, 238, 1066
BcgI	CGANNNNNNTGC	4 cut(s)	172, 206, 2605, 2639
BciT130I	CCWGG	6 cut(s)	592, 830, 921, 1274, 2054, 2596
BclI	TGATCA	2 cut(s)	634, 1318
BcnI	CCSGG	1 cut(s)	874
BcoDI	GTCTC	3 cut(s)	30, 587, 979
BfmI	CTRYAG	5 cut(s)	288, 1257, 1605, 1979, 2184
BfrI	CTTAAG	1 cut(s)	1646
BfuAI	ACCTGC	2 cut(s)	596, 1972
BglII	AGATCT	1 cut(s)	2086
BisI	GCNGC	9 cut(s)	145, 226, 288, 952, 1111, 1123, 1257, 1353, 2856
BlnI	CCTAGG	1 cut(s)	2345
BlsI	GCNGC	9 cut(s)	146, 227, 289, 953, 1112, 1124, 1258, 1354, 2857
Bme1390I	CCNGG	7 cut(s)	592, 830, 874, 921, 1274, 2054, 2596
Bme18I	GGWCC	1 cut(s)	551
BmeRI	GACNNNNNGTC	2 cut(s)	175, 349
BmeT110I	CYCGRG	2 cut(s)	212, 251
BmgBI	CACGTC	2 cut(s)	172, 677
BmgT120I	GGNCC	1 cut(s)	551
BmiI	GGNNCC	5 cut(s)	6, 114, 229, 2325, 2824
BmrFI	CCNGG	7 cut(s)	592, 830, 874, 921, 1274, 2054, 2596
BmsI	GCATC	9 cut(s)	192, 592, 854, 1024, 1189, 1364, 1630, 1788, 2004
BmtI	GCTAGC	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	2075
Bpu10I	CCTNAGC	3 cut(s)	681, 1614, 2351
BpuEI	CTTGAG	3 cut(s)	107, 2411, 2509
BpuMI	CCSGG	1 cut(s)	874
Bsa29I	ATCGAT	2 cut(s)	761, 2359
BsaAI	YACGTR	1 cut(s)	998
BsaHI	GRCGYC	2 cut(s)	27, 176
BsaI	GGTCTC	1 cut(s)	979
BsaJI	CCNNGG	9 cut(s)	116, 591, 919, 1169, 1273, 2052, 2345, 2594, 2595
BsaXI	ACNNNNNCTCC	8 cut(s)	565, 595, 1532, 1562, 2090, 2120, 2570, 2600
Bse118I	RCCGGY	1 cut(s)	1125
Bse1I	ACTGG	2 cut(s)	1439, 1789
Bse3DI	GCAATG	5 cut(s)	585, 1182, 1586, 2422, 2500
BseBI	CCWGG	6 cut(s)	592, 830, 921, 1274, 2054, 2596
BseCI	ATCGAT	2 cut(s)	761, 2359
BseDI	CCNNGG	9 cut(s)	116, 591, 919, 1169, 1273, 2052, 2345, 2594, 2595
BseGI	GGATG	5 cut(s)	718, 845, 1180, 1628, 2794
BseMI	GCAATG	5 cut(s)	585, 1182, 1586, 2422, 2500
BseMII	CTCAG	6 cut(s)	672, 1116, 1614, 1628, 2365, 2555
BseNI	ACTGG	2 cut(s)	1439, 1789
BseRI	GAGGAG	7 cut(s)	77, 107, 110, 113, 122, 125, 2240
BseX3I	CGGCCG	1 cut(s)	1123
BseXI	GCAGC	6 cut(s)	156, 274, 963, 1122, 1243, 2842
BseYI	CCCAGC	2 cut(s)	514, 735
Bsh1236I	CGCG	2 cut(s)	194, 209
Bsh1285I	CGRYCG	1 cut(s)	1126
BshFI	GGCC	5 cut(s)	661, 1125, 1272, 1567, 2738
BshNI	GGYRCC	1 cut(s)	227
BshVI	ATCGAT	2 cut(s)	761, 2359
BsiEI	CGRYCG	1 cut(s)	1126
BsiHKAI	GWGCWC	1 cut(s)	2283
BsiHKCI	CYCGRG	2 cut(s)	212, 251
BsiSI	CCGG	2 cut(s)	873, 1126
BslFI	GGGAC	4 cut(s)	229, 794, 1290, 1433
BsmAI	GTCTC	3 cut(s)	30, 587, 979
BsmBI	CGTCTC	1 cut(s)	30
BsmFI	GGGAC	4 cut(s)	229, 794, 1290, 1433
BsmI	GAATGC	2 cut(s)	147, 1888
BsnI	GGCC	5 cut(s)	661, 1125, 1272, 1567, 2738
Bso31I	GGTCTC	1 cut(s)	979
BsoBI	CYCGRG	2 cut(s)	212, 251
Bsp1286I	GDGCHC	1 cut(s)	2283
Bsp1407I	TGTACA	1 cut(s)	1045
BspACI	CCGC	7 cut(s)	14, 194, 225, 563, 1122, 1353, 2601
BspANI	GGCC	5 cut(s)	661, 1125, 1272, 1567, 2738
BspCNI	CTCAG	6 cut(s)	673, 1115, 1613, 1627, 2364, 2554
BspDI	ATCGAT	2 cut(s)	761, 2359
BspFNI	CGCG	2 cut(s)	194, 209
BspLI	GGNNCC	5 cut(s)	6, 114, 229, 2325, 2824
BspMAI	CTGCAG	3 cut(s)	292, 1261, 1983
BspMI	ACCTGC	2 cut(s)	596, 1972
BspOI	GCTAGC	1 cut(s)	168
BspPI	GGATC	7 cut(s)	1390, 1825, 1918, 2000, 2294, 2364, 2621
BspT107I	GGYRCC	1 cut(s)	227
BspTI	CTTAAG	1 cut(s)	1646
BspTNI	GGTCTC	1 cut(s)	979
BsrDI	GCAATG	5 cut(s)	585, 1182, 1586, 2422, 2500
BsrFI	RCCGGY	1 cut(s)	1125
BsrGI	TGTACA	1 cut(s)	1045
BsrI	ACTGG	2 cut(s)	1439, 1789
BssAI	RCCGGY	1 cut(s)	1125
BssECI	CCNNGG	9 cut(s)	116, 591, 919, 1169, 1273, 2052, 2345, 2594, 2595
BssNI	GRCGYC	2 cut(s)	27, 176
BssSI	CACGAG	1 cut(s)	663
BssT1I	CCWWGG	2 cut(s)	1169, 2345
Bst2BI	CACGAG	1 cut(s)	663
Bst2UI	CCWGG	6 cut(s)	592, 830, 921, 1274, 2054, 2596
Bst4CI	ACNGT	6 cut(s)	232, 1152, 1555, 2287, 2514, 2780
Bst6I	CTCTTC	8 cut(s)	48, 69, 75, 84, 99, 1588, 2077, 2172
BstACI	GRCGYC	2 cut(s)	27, 176
BstAFI	CTTAAG	1 cut(s)	1646
BstAPI	GCANNNNNTGC	2 cut(s)	602, 1709
BstAUI	TGTACA	1 cut(s)	1045
BstBAI	YACGTR	1 cut(s)	998
BstC8I	GCNNGC	5 cut(s)	166, 1120, 1270, 1811, 1815
BstDEI	CTNAG	7 cut(s)	302, 681, 1102, 1600, 1614, 2351, 2541
BstENI	CCTNNNNNAGG	3 cut(s)	1101, 1649, 2057
BstF5I	GGATG	5 cut(s)	718, 845, 1180, 1628, 2794
BstFNI	CGCG	2 cut(s)	194, 209
BstHHI	GCGC	1 cut(s)	211
BstMAI	GTCTC	3 cut(s)	30, 587, 979
BstMCI	CGRYCG	1 cut(s)	1126
BstNI	CCWGG	6 cut(s)	592, 830, 921, 1274, 2054, 2596
BstNSI	RCATGY	3 cut(s)	563, 809, 2620
BstSCI	CCNGG	7 cut(s)	590, 828, 872, 919, 1272, 2052, 2594
BstSFI	CTRYAG	5 cut(s)	288, 1257, 1605, 1979, 2184
BstSNI	TACGTA	1 cut(s)	998
BstUI	CGCG	2 cut(s)	194, 209
BstV1I	GCAGC	6 cut(s)	156, 274, 963, 1122, 1243, 2842
BstX2I	RGATCY	4 cut(s)	1382, 1923, 2086, 2299
BstXI	CCANNNNNNTGG	3 cut(s)	160, 2335, 2819
BstYI	RGATCY	4 cut(s)	1382, 1923, 2086, 2299
BstZI	CGGCCG	1 cut(s)	1123
Bsu15I	ATCGAT	2 cut(s)	761, 2359
BsuRI	GGCC	5 cut(s)	661, 1125, 1272, 1567, 2738
BsuTUI	ATCGAT	2 cut(s)	761, 2359
BtgZI	GCGATG	1 cut(s)	169
BtrI	CACGTC	2 cut(s)	172, 677
BtsCI	GGATG	5 cut(s)	718, 845, 1180, 1628, 2794
BtsI	GCAGTG	4 cut(s)	297, 1668, 1963, 2246
BtsIMutI	CAGTG	7 cut(s)	297, 375, 1148, 1668, 1963, 2246, 2785
BveI	ACCTGC	2 cut(s)	596, 1972
Cac8I	GCNNGC	5 cut(s)	166, 1120, 1270, 1811, 1815
CfoI	GCGC	1 cut(s)	211
Cfr10I	RCCGGY	1 cut(s)	1125
Cfr13I	GGNCC	1 cut(s)	551
ClaI	ATCGAT	2 cut(s)	761, 2359
CseI	GACGC	3 cut(s)	16, 165, 1418
CsiI	ACCWGGT	1 cut(s)	828
Csp6I	GTAC	6 cut(s)	127, 619, 995, 1046, 1153, 2847
CviQI	GTAC	6 cut(s)	127, 619, 995, 1046, 1153, 2847
DdeI	CTNAG	7 cut(s)	302, 681, 1102, 1600, 1614, 2351, 2541
DraI	TTTAAA	1 cut(s)	523
DriI	GACNNNNNGTC	2 cut(s)	175, 349
EaeI	YGGCCR	3 cut(s)	1123, 1565, 2736
EagI	CGGCCG	1 cut(s)	1123
Eam1104I	CTCTTC	8 cut(s)	48, 69, 75, 84, 99, 1588, 2077, 2172
Eam1105I	GACNNNNNGTC	2 cut(s)	175, 349
EarI	CTCTTC	8 cut(s)	48, 69, 75, 84, 99, 1588, 2077, 2172
EclXI	CGGCCG	1 cut(s)	1123
Eco105I	TACGTA	1 cut(s)	998
Eco130I	CCWWGG	2 cut(s)	1169, 2345
Eco31I	GGTCTC	1 cut(s)	979
Eco47I	GGWCC	1 cut(s)	551
Eco52I	CGGCCG	1 cut(s)	1123
Eco57I	CTGAAG	4 cut(s)	1155, 1224, 1368, 1881
Eco88I	CYCGRG	2 cut(s)	212, 251
EcoNI	CCTNNNNNAGG	3 cut(s)	1101, 1649, 2057
EcoO109I	RGGNCCY	1 cut(s)	551
EcoRI	GAATTC	1 cut(s)	269
EcoRII	CCWGG	6 cut(s)	590, 828, 919, 1272, 2052, 2594
EcoT14I	CCWWGG	2 cut(s)	1169, 2345
ErhI	CCWWGG	2 cut(s)	1169, 2345
Esp3I	CGTCTC	1 cut(s)	30
FaqI	GGGAC	4 cut(s)	229, 794, 1290, 1433
FauNDI	CATATG	2 cut(s)	1323, 2065
FbaI	TGATCA	2 cut(s)	634, 1318
FblI	GTMKAC	1 cut(s)	2757
Fnu4HI	GCNGC	9 cut(s)	145, 226, 288, 952, 1111, 1123, 1257, 1353, 2856
FokI	GGATG	5 cut(s)	725, 832, 1187, 1615, 2801
Fsp4HI	GCNGC	9 cut(s)	145, 226, 288, 952, 1111, 1123, 1257, 1353, 2856
GlaI	GCGC	1 cut(s)	210
GluI	GCNGC	9 cut(s)	145, 226, 288, 952, 1111, 1123, 1257, 1353, 2856
GsaI	CCCAGC	2 cut(s)	518, 739
GsuI	CTGGAG	1 cut(s)	2075
HaeIII	GGCC	5 cut(s)	661, 1125, 1272, 1567, 2738
HapII	CCGG	2 cut(s)	873, 1126
HgaI	GACGC	3 cut(s)	16, 165, 1418
HhaI	GCGC	1 cut(s)	211
Hin1I	GRCGYC	2 cut(s)	27, 176
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HincII	GTYRAC	3 cut(s)	1551, 2042, 2443
HindII	GTYRAC	3 cut(s)	1551, 2042, 2443
HindIII	AAGCTT	2 cut(s)	1248, 1811
HinfI	GANTC	8 cut(s)	10, 217, 256, 716, 1766, 1901, 2341, 2702
HpaII	CCGG	2 cut(s)	873, 1126
HphI	GGTGA	9 cut(s)	332, 557, 577, 902, 935, 1151, 2368, 2557, 2810
Hpy166II	GTNNAC	7 cut(s)	619, 1048, 1286, 1551, 2042, 2443, 2758
Hpy188I	TCNGA	4 cut(s)	9, 343, 855, 1861
Hpy8I	GTNNAC	7 cut(s)	619, 1048, 1286, 1551, 2042, 2443, 2758
Hpy99I	CGWCG	3 cut(s)	32, 173, 194
HpyAV	CCTTC	6 cut(s)	26, 311, 542, 1130, 1750, 2053
HpyCH4III	ACNGT	6 cut(s)	232, 1152, 1555, 2287, 2514, 2780
HpyCH4IV	ACGT	4 cut(s)	171, 640, 676, 997
HpyF3I	CTNAG	7 cut(s)	302, 681, 1102, 1600, 1614, 2351, 2541
HpySE526I	ACGT	4 cut(s)	171, 640, 676, 997
Hsp92I	GRCGYC	2 cut(s)	27, 176
HspAI	GCGC	1 cut(s)	209
Ksp22I	TGATCA	2 cut(s)	634, 1318
LmnI	GCTCC	7 cut(s)	10, 112, 696, 1099, 1540, 2098, 2278
Lsp1109I	GCAGC	6 cut(s)	156, 274, 963, 1122, 1243, 2842
LweI	GCATC	9 cut(s)	192, 592, 854, 1024, 1189, 1364, 1630, 1788, 2004
MabI	ACCWGGT	1 cut(s)	828
MaeII	ACGT	4 cut(s)	171, 640, 676, 997
MaeIII	GTNAC	2 cut(s)	1003, 2374
MfeI	CAATTG	1 cut(s)	1887
MflI	RGATCY	4 cut(s)	1382, 1923, 2086, 2299
MhlI	GDGCHC	1 cut(s)	2283
MlsI	TGGCCA	2 cut(s)	1567, 2738
MluNI	TGGCCA	2 cut(s)	1567, 2738
MlyI	GAGTC	2 cut(s)	211, 710
MmeI	TCCRAC	2 cut(s)	1484, 2269
Mox20I	TGGCCA	2 cut(s)	1567, 2738
MroXI	GAANNNNTTC	1 cut(s)	337
MscI	TGGCCA	2 cut(s)	1567, 2738
MslI	CAYNNNNRTG	3 cut(s)	543, 1360, 2211
Msp20I	TGGCCA	2 cut(s)	1567, 2738
MspCI	CTTAAG	1 cut(s)	1646
MspI	CCGG	2 cut(s)	873, 1126
MspR9I	CCNGG	7 cut(s)	592, 830, 874, 921, 1274, 2054, 2596
MunI	CAATTG	1 cut(s)	1887
Mva1269I	GAATGC	2 cut(s)	147, 1888
MvaI	CCWGG	6 cut(s)	592, 830, 921, 1274, 2054, 2596
MvnI	CGCG	2 cut(s)	194, 209
NciI	CCSGG	1 cut(s)	874
NdeI	CATATG	2 cut(s)	1323, 2065
NheI	GCTAGC	1 cut(s)	164
NlaIV	GGNNCC	5 cut(s)	6, 114, 229, 2325, 2824
NmeAIII	GCCGAG	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	2374
NspI	RCATGY	3 cut(s)	563, 809, 2620
OliI	CACNNNNGTG	1 cut(s)	543
PaqCI	CACCTGC	1 cut(s)	596
PasI	CCCWGGG	1 cut(s)	2595
PcsI	WCGNNNNNNNCGW	2 cut(s)	36, 228
PctI	GAATGC	2 cut(s)	147, 1888
PdmI	GAANNNNTTC	1 cut(s)	337
PfeI	GAWTC	6 cut(s)	10, 256, 1766, 1901, 2341, 2702
PflMI	CCANNNNNTGG	2 cut(s)	136, 818
PfoI	TCCNGGA	1 cut(s)	872
PkrI	GCNGC	9 cut(s)	146, 227, 289, 953, 1112, 1124, 1258, 1354, 2857
PleI	GAGTC	2 cut(s)	211, 710
PpsI	GAGTC	2 cut(s)	211, 710
Ppu21I	YACGTR	1 cut(s)	998
PpuMI	RGGWCCY	1 cut(s)	551
Psp5II	RGGWCCY	1 cut(s)	551
Psp6I	CCWGG	6 cut(s)	590, 828, 919, 1272, 2052, 2594
PspFI	CCCAGC	2 cut(s)	514, 735
PspGI	CCWGG	6 cut(s)	590, 828, 919, 1272, 2052, 2594
PspN4I	GGNNCC	5 cut(s)	6, 114, 229, 2325, 2824
PspPI	GGNCC	1 cut(s)	551
PspPPI	RGGWCCY	1 cut(s)	551
PstI	CTGCAG	3 cut(s)	292, 1261, 1983
PsuI	RGATCY	4 cut(s)	1382, 1923, 2086, 2299
RsaI	GTAC	6 cut(s)	128, 620, 996, 1047, 1154, 2848
RsaNI	GTAC	6 cut(s)	127, 619, 995, 1046, 1153, 2847
RseI	CAYNNNNRTG	3 cut(s)	543, 1360, 2211
SatI	GCNGC	9 cut(s)	145, 226, 288, 952, 1111, 1123, 1257, 1353, 2856
Sau96I	GGNCC	1 cut(s)	551
SchI	GAGTC	2 cut(s)	211, 710
ScrFI	CCNGG	7 cut(s)	592, 830, 874, 921, 1274, 2054, 2596
SduI	GDGCHC	1 cut(s)	2283
SexAI	ACCWGGT	1 cut(s)	828
SfaNI	GCATC	9 cut(s)	192, 592, 854, 1024, 1189, 1364, 1630, 1788, 2004
SfcI	CTRYAG	5 cut(s)	288, 1257, 1605, 1979, 2184
SinI	GGWCC	1 cut(s)	551
SmiMI	CAYNNNNRTG	3 cut(s)	543, 1360, 2211
SmlI	CTYRAG	4 cut(s)	122, 1646, 2426, 2488
SmoI	CTYRAG	4 cut(s)	122, 1646, 2426, 2488
SnaBI	TACGTA	1 cut(s)	998
SsiI	CCGC	7 cut(s)	14, 194, 225, 563, 1122, 1353, 2601
StyD4I	CCNGG	7 cut(s)	590, 828, 872, 919, 1272, 2052, 2594
StyI	CCWWGG	2 cut(s)	1169, 2345
TaaI	ACNGT	6 cut(s)	232, 1152, 1555, 2287, 2514, 2780
TaiI	ACGT	4 cut(s)	174, 643, 679, 1000
TaqI	TCGA	7 cut(s)	30, 243, 309, 761, 2359, 2550, 2625
TatI	WGTACW	3 cut(s)	1045, 1152, 2846
TauI	GCSGC	3 cut(s)	228, 1125, 1355
TfiI	GAWTC	6 cut(s)	10, 256, 1766, 1901, 2341, 2702
TscAI	CASTG	7 cut(s)	297, 382, 1155, 1668, 1963, 2246, 2785
TseFI	GTSAC	1 cut(s)	2374
TseI	GCWGC	6 cut(s)	144, 287, 951, 1110, 1256, 2855
Tsp45I	GTSAC	1 cut(s)	2374
TspGWI	ACGGA	2 cut(s)	1294, 2346
TspRI	CASTG	7 cut(s)	297, 382, 1155, 1668, 1963, 2246, 2785
Van91I	CCANNNNNTGG	2 cut(s)	136, 818
Vha464I	CTTAAG	1 cut(s)	1646
VpaK11BI	GGWCC	1 cut(s)	551
XagI	CCTNNNNNAGG	3 cut(s)	1101, 1649, 2057
XapI	RAATTY	6 cut(s)	269, 323, 944, 2070, 2189, 2481
XbaI	TCTAGA	2 cut(s)	455, 1307
XceI	RCATGY	3 cut(s)	563, 809, 2620
XmaJI	CCTAGG	1 cut(s)	2345
XmiI	GTMKAC	1 cut(s)	2757
XmnI	GAANNNNTTC	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.