Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005429

Physical Location & Seq

Genomic Coordinates Reverse (-)

60431639 .. 60446447

Gene Structure 14809 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035077

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGAATAAATGGATGCATATATTATTTGCAGAGATCGATATTGAAGATCATATTGCTTGGCTTCTTCAACATGGTGCACACGAAAAAGTTTTGGCAGCAATTGAAGCTGGCCAGGGACGAAGTGAACTTCTTGACGAGGTCGTCCCACTGATGATGCTGGATTGCAAGCACGTTATTCCTTTATTGATTCAAAATAAGGACTTGATTACTCCATCTCAAGTTGTCAAACAACTTTTGAATGCGAGTGATAAGTGCGATTCCAAAAATTACTTGCATCTATATTTGCATTCACTATTTGAAGTAAACCCTCATGTTGGAAAAGATTTCCATGATATGCAGGTAGAGCTTTATGCAAACTATGATTCAAAGATACTGCTTCCTTTTCTTCATAGTAGTCAACATTATACACTTGAGAAGGCTGTAGAATTTTTGAGTATGCAACATGATGATGAACTATGGGAGGAATTGATCCAGCAGTGTCTTCATAAACCTGAGATGGTCGGCGTGCTATTGGAGCACACTGTTGGAATCTTGATCCTCTTTATATTGCGAATATGGCTCAGGGATAGGCTAGTCAAAATTATCACCAATTACAAGATTGAAACATCTCTAAAACATGGGTGCAGTGACATCCTTACGGCTGATATTGTGAACCTCTTGGTGAAACACTACAATGAGACGAGACTTGGAATTTACTTGAGCAATGAAGAAGATGAGGCACGAGCAAAAAGGAATGATGGTAGGACTTCTCAAGTGATTGAGAAATCATCACCTGGTGTGAGAAGTATGGAGGTTAAATCAATATCAAAGGGTGGTGCAAGGACTTGTCTTATGGATTCCACCTACACTAGTGGAATGAATGGGAGTGATATCACTTCCCCTGAGAAAGTAGCAGATTATGGGTATGATGATAGTGATGTGGATGATGATGGTGATGATGGTCCCCAATCGGGTGGCTCTCGCATGTGTTGTATCCATGTACTACTGCTAGTGGAACTTAGTGATATGTGCACTCATTTGCACTTGATTTGCTTGCATGCTTATTTATTTTTTTGGGCGAGCTTTGAAGAGGATTATGGTCATCCGGGCTACTTTCTTAGTGCACGGGAAATTGCATGCACATTTGTTCGAGTTGATATGTACATTTTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019899 GO:0030897 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033263 GO:0033365 GO:0034613 GO:0035542 GO:0042144 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048284 GO:0050789 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0097576 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Clathrin

Protein Analysis

385

Amino Acids

43.83

Weight (kDa)

5.15

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_Vps41	PF23556	26 - 142	1.9e-32	Vps41 TPR-like region
TPR_Vps41	PF23556	137 - 176	5.8e-12	Vps41 TPR-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08190
fragaria_vesca	FvH4_3g30370 FvH4_3g30370 FvH4_3g30370 FvH4_3g30370 FvH4_3g30370
malus_domestica	MD03G1129800.v1.1 MD11G1151700.v1.1
prunus_persica	Prupe.6G114800_v2.0.a1 Prupe.6G114800_v2.0.a1
pyrus_communis	pycom11g12380 pycom11g12390
rosa_chinensis	RchiOBHm_Chr5g0056311
rosa_laevigata	RLG00000035067 RLG00000035070 RLG00000035077 RLG00000035080 RLG00000035082
rosa_multiflora	Rmu_sc0000680.1_g000003
rosa_roxburghii	Rroxscaffold_1G00024010
rosa_rugosa	Rorug05G0298600 Rorug05G0298700 Rorug05G0298800
rosa_samantha	Rh5AG369600 Rh5BG380500 Rh5CG404000 Rh5DG393600
rosa_wichuraiana	Rw0G004390 Rw0G012630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	140
Acc36I	ACCTGC	1 cut(s)	328
AclWI	GGATC	2 cut(s)	463, 529
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	2 cut(s)	425, 690
AdeI	CACNNNGTG	1 cut(s)	776
AfaI	GTAC	2 cut(s)	981, 1142
AfiI	CCNNNNNNNGG	2 cut(s)	314, 950
AgsI	TTSAA	9 cut(s)	44, 68, 104, 191, 238, 299, 366, 602, 1067
AhlI	ACTAGT	1 cut(s)	848
AjnI	CCWGG	2 cut(s)	111, 772
AluBI	AGCT	3 cut(s)	107, 346, 1062
AluI	AGCT	3 cut(s)	107, 346, 1062
Alw21I	GWGCWC	4 cut(s)	79, 519, 1013, 1105
Alw26I	GTCTC	2 cut(s)	671, 676
Alw44I	GTGCAC	3 cut(s)	75, 1009, 1101
AlwI	GGATC	2 cut(s)	463, 529
AoxI	GGCC	1 cut(s)	109
ApaLI	GTGCAC	3 cut(s)	75, 1009, 1101
ApeKI	GCWGC	1 cut(s)	95
ApoI	RAATTY	2 cut(s)	425, 690
AspS9I	GGNCC	1 cut(s)	941
AsuC2I	CCSGG	1 cut(s)	1086
AsuHPI	GGTGA	4 cut(s)	577, 673, 762, 944
AvaII	GGWCC	1 cut(s)	941
BaeGI	GKGCMC	3 cut(s)	79, 1013, 1105
BalI	TGGCCA	1 cut(s)	111
BauI	CACGAG	1 cut(s)	720
BbsI	GAAGAC	1 cut(s)	473
Bbv12I	GWGCWC	4 cut(s)	79, 519, 1013, 1105
BbvI	GCAGC	1 cut(s)	107
BccI	CCATC	5 cut(s)	220, 490, 731, 923, 932
BceAI	ACGGC	1 cut(s)	654
BciT130I	CCWGG	2 cut(s)	113, 774
BciVI	GTATCC	1 cut(s)	983
BcnI	CCSGG	1 cut(s)	1086
BcoDI	GTCTC	2 cut(s)	671, 676
BcuI	ACTAGT	1 cut(s)	848
BfaI	CTAG	3 cut(s)	572, 849, 989
BfmI	CTRYAG	1 cut(s)	420
BfuAI	ACCTGC	1 cut(s)	328
BfuI	GTATCC	1 cut(s)	983
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
Bme1390I	CCNGG	3 cut(s)	113, 774, 1086
Bme18I	GGWCC	1 cut(s)	941
BmgT120I	GGNCC	1 cut(s)	941
BmiI	GGNNCC	1 cut(s)	943
BmrFI	CCNGG	3 cut(s)	113, 774, 1086
BmsI	GCATC	3 cut(s)	3, 144, 283
BpiI	GAAGAC	1 cut(s)	473
Bpu10I	CCTNAGC	1 cut(s)	560
BpuEI	CTTGAG	4 cut(s)	201, 431, 718, 735
BpuMI	CCSGG	1 cut(s)	1086
Bsa29I	ATCGAT	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	2 cut(s)	314, 950
Bse3DI	GCAATG	1 cut(s)	709
BseBI	CCWGG	2 cut(s)	113, 774
BseCI	ATCGAT	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	112
BseGI	GGATG	4 cut(s)	18, 630, 928, 1081
BseLI	CCNNNNNNNGG	2 cut(s)	314, 950
BseMI	GCAATG	1 cut(s)	709
BseMII	CTCAG	3 cut(s)	483, 574, 873
BseSI	GKGCMC	3 cut(s)	79, 1013, 1105
BseXI	GCAGC	1 cut(s)	107
BsgI	GTGCAG	1 cut(s)	643
BshFI	GGCC	1 cut(s)	111
BshVI	ATCGAT	1 cut(s)	36
BsiHKAI	GWGCWC	4 cut(s)	79, 519, 1013, 1105
BsiSI	CCGG	1 cut(s)	1085
BslFI	GGGAC	3 cut(s)	128, 129, 927
BslI	CCNNNNNNNGG	2 cut(s)	314, 950
BsmAI	GTCTC	2 cut(s)	671, 676
BsmBI	CGTCTC	1 cut(s)	671
BsmFI	GGGAC	3 cut(s)	128, 129, 927
BsmI	GAATGC	2 cut(s)	244, 286
BsnI	GGCC	1 cut(s)	111
Bsp1286I	GDGCHC	4 cut(s)	79, 519, 1013, 1105
Bsp1407I	TGTACA	1 cut(s)	1140
Bsp143I	GATC	4 cut(s)	33, 46, 468, 534
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	3 cut(s)	484, 573, 874
BspDI	ATCGAT	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	943
BspMI	ACCTGC	1 cut(s)	328
BspPI	GGATC	2 cut(s)	463, 529
BsrDI	GCAATG	1 cut(s)	709
BsrGI	TGTACA	1 cut(s)	1140
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	4 cut(s)	33, 46, 468, 534
BssSI	CACGAG	1 cut(s)	720
Bst2BI	CACGAG	1 cut(s)	720
Bst2UI	CCWGG	2 cut(s)	113, 774
Bst4CI	ACNGT	1 cut(s)	523
Bst6I	CTCTTC	1 cut(s)	1062
BstAUI	TGTACA	1 cut(s)	1140
BstC8I	GCNNGC	7 cut(s)	109, 167, 506, 1034, 1038, 1060, 1117
BstDEI	CTNAG	5 cut(s)	492, 560, 882, 998, 1097
BstF5I	GGATG	4 cut(s)	18, 630, 928, 1081
BstKTI	GATC	4 cut(s)	36, 49, 471, 537
BstMAI	GTCTC	2 cut(s)	671, 676
BstMBI	GATC	4 cut(s)	33, 46, 468, 534
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 343, 514, 556
BstNI	CCWGG	2 cut(s)	113, 774
BstNSI	RCATGY	3 cut(s)	967, 1040, 1119
BstSCI	CCNGG	3 cut(s)	111, 772, 1084
BstSFI	CTRYAG	1 cut(s)	420
BstSLI	GKGCMC	3 cut(s)	79, 1013, 1105
BstV1I	GCAGC	1 cut(s)	107
BstV2I	GAAGAC	1 cut(s)	473
BstXI	CCANNNNNNTGG	1 cut(s)	953
Bsu15I	ATCGAT	1 cut(s)	36
BsuI	GTATCC	1 cut(s)	983
BsuRI	GGCC	1 cut(s)	111
BsuTUI	ATCGAT	1 cut(s)	36
BtsCI	GGATG	4 cut(s)	18, 630, 928, 1081
BtsI	GCAGTG	2 cut(s)	482, 631
BtsIMutI	CAGTG	4 cut(s)	146, 482, 519, 631
BveI	ACCTGC	1 cut(s)	328
Cac8I	GCNNGC	7 cut(s)	109, 167, 506, 1034, 1038, 1060, 1117
Cfr13I	GGNCC	1 cut(s)	941
ClaI	ATCGAT	1 cut(s)	36
CsiI	ACCWGGT	1 cut(s)	772
Csp6I	GTAC	2 cut(s)	980, 1141
CviAII	CATG	9 cut(s)	71, 311, 329, 443, 617, 964, 977, 1037, 1116
CviQI	GTAC	2 cut(s)	980, 1141
DdeI	CTNAG	5 cut(s)	492, 560, 882, 998, 1097
DpnI	GATC	4 cut(s)	35, 48, 470, 536
DpnII	GATC	4 cut(s)	33, 46, 468, 534
DraIII	CACNNNGTG	1 cut(s)	776
DrdI	GACNNNNNNGTC	1 cut(s)	140
DseDI	GACNNNNNNGTC	1 cut(s)	140
EaeI	YGGCCR	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	1062
EarI	CTCTTC	1 cut(s)	1062
Eco32I	GATATC	1 cut(s)	871
Eco47I	GGWCC	1 cut(s)	941
EcoRII	CCWGG	2 cut(s)	111, 772
EcoRV	GATATC	1 cut(s)	871
EcoT22I	ATGCAT	1 cut(s)	18
Esp3I	CGTCTC	1 cut(s)	671
FaeI	CATG	9 cut(s)	74, 314, 332, 446, 620, 967, 980, 1040, 1119
FaqI	GGGAC	3 cut(s)	128, 129, 927
FatI	CATG	9 cut(s)	70, 310, 328, 442, 616, 963, 976, 1036, 1115
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	4 cut(s)	25, 617, 935, 1068
Fsp4HI	GCNGC	1 cut(s)	96
FspBI	CTAG	3 cut(s)	572, 849, 989
GluI	GCNGC	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	1 cut(s)	1085
Hin1II	CATG	9 cut(s)	74, 314, 332, 446, 620, 967, 980, 1040, 1119
HincII	GTYRAC	1 cut(s)	398
HindII	GTYRAC	1 cut(s)	398
HinfI	GANTC	5 cut(s)	187, 257, 362, 528, 836
HpaII	CCGG	1 cut(s)	1085
HphI	GGTGA	4 cut(s)	577, 673, 762, 944
Hpy166II	GTNNAC	7 cut(s)	77, 125, 304, 398, 652, 1011, 1103
Hpy188III	TCNNGA	2 cut(s)	131, 532
Hpy8I	GTNNAC	7 cut(s)	77, 125, 304, 398, 652, 1011, 1103
HpyAV	CCTTC	1 cut(s)	409
HpyCH4III	ACNGT	1 cut(s)	523
HpyCH4IV	ACGT	1 cut(s)	171
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 343, 514, 556
HpyF3I	CTNAG	5 cut(s)	492, 560, 882, 998, 1097
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	9 cut(s)	74, 314, 332, 446, 620, 967, 980, 1040, 1119
Kzo9I	GATC	4 cut(s)	33, 46, 468, 534
LmnI	GCTCC	1 cut(s)	514
Lsp1109I	GCAGC	1 cut(s)	107
LweI	GCATC	3 cut(s)	3, 144, 283
MabI	ACCWGGT	1 cut(s)	772
MaeI	CTAG	3 cut(s)	572, 849, 989
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	626
MalI	GATC	4 cut(s)	35, 48, 470, 536
MboI	GATC	4 cut(s)	33, 46, 468, 534
MboII	GAAGA	7 cut(s)	56, 56, 377, 473, 719, 722, 1079
MfeI	CAATTG	1 cut(s)	99
MhlI	GDGCHC	4 cut(s)	79, 519, 1013, 1105
MlsI	TGGCCA	1 cut(s)	111
MluCI	AATT	8 cut(s)	99, 265, 425, 464, 579, 589, 690, 1110
MluNI	TGGCCA	1 cut(s)	111
MmeI	TCCRAC	2 cut(s)	295, 505
MnlI	CCTC	8 cut(s)	130, 318, 454, 548, 665, 709, 784, 1063
Mox20I	TGGCCA	1 cut(s)	111
Mph1103I	ATGCAT	1 cut(s)	18
MscI	TGGCCA	1 cut(s)	111
MseI	TTAA	2 cut(s)	795, 1153
MslI	CAYNNNNRTG	2 cut(s)	447, 672
Msp20I	TGGCCA	1 cut(s)	111
MspI	CCGG	1 cut(s)	1085
MspR9I	CCNGG	3 cut(s)	113, 774, 1086
MunI	CAATTG	1 cut(s)	99
Mva1269I	GAATGC	2 cut(s)	244, 286
MvaI	CCWGG	2 cut(s)	113, 774
MwoI	GCNNNNNNNGC	4 cut(s)	104, 343, 514, 556
NciI	CCSGG	1 cut(s)	1086
NdeII	GATC	4 cut(s)	33, 46, 468, 534
NlaIII	CATG	9 cut(s)	74, 314, 332, 446, 620, 967, 980, 1040, 1119
NlaIV	GGNNCC	1 cut(s)	943
NmuCI	GTSAC	1 cut(s)	626
NsiI	ATGCAT	1 cut(s)	18
NspI	RCATGY	3 cut(s)	967, 1040, 1119
PaeI	GCATGC	2 cut(s)	1040, 1119
PctI	GAATGC	2 cut(s)	244, 286
PfeI	GAWTC	5 cut(s)	187, 257, 362, 528, 836
PflFI	GACNNNGTC	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	97
Psp6I	CCWGG	2 cut(s)	111, 772
PspGI	CCWGG	2 cut(s)	111, 772
PspN4I	GGNNCC	1 cut(s)	943
PspPI	GGNCC	1 cut(s)	941
PsyI	GACNNNGTC	1 cut(s)	137
RsaI	GTAC	2 cut(s)	981, 1142
RsaNI	GTAC	2 cut(s)	980, 1141
RseI	CAYNNNNRTG	2 cut(s)	447, 672
SaqAI	TTAA	2 cut(s)	795, 1153
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	4 cut(s)	33, 46, 468, 534
Sau96I	GGNCC	1 cut(s)	941
ScrFI	CCNGG	3 cut(s)	113, 774, 1086
SduI	GDGCHC	4 cut(s)	79, 519, 1013, 1105
SexAI	ACCWGGT	1 cut(s)	772
SfaNI	GCATC	3 cut(s)	3, 144, 283
SfcI	CTRYAG	1 cut(s)	420
SinI	GGWCC	1 cut(s)	941
SmiMI	CAYNNNNRTG	2 cut(s)	447, 672
SmlI	CTYRAG	4 cut(s)	216, 410, 697, 750
SmoI	CTYRAG	4 cut(s)	216, 410, 697, 750
SpeI	ACTAGT	1 cut(s)	848
SphI	GCATGC	2 cut(s)	1040, 1119
Sse9I	AATT	8 cut(s)	99, 265, 425, 464, 579, 589, 690, 1110
SspMI	CTAG	3 cut(s)	572, 849, 989
StyD4I	CCNGG	3 cut(s)	111, 772, 1084
TaaI	ACNGT	1 cut(s)	523
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	2 cut(s)	36, 1129
TasI	AATT	8 cut(s)	99, 265, 425, 464, 579, 589, 690, 1110
TatI	WGTACW	2 cut(s)	979, 1140
TfiI	GAWTC	5 cut(s)	187, 257, 362, 528, 836
Tru1I	TTAA	2 cut(s)	795, 1153
Tru9I	TTAA	2 cut(s)	795, 1153
TscAI	CASTG	4 cut(s)	153, 482, 526, 631
TseFI	GTSAC	1 cut(s)	626
TseI	GCWGC	1 cut(s)	95
Tsp45I	GTSAC	1 cut(s)	626
TspDTI	ATGAA	6 cut(s)	17, 377, 465, 473, 720, 872
TspRI	CASTG	4 cut(s)	153, 482, 526, 631
Tth111I	GACNNNGTC	1 cut(s)	137
VneI	GTGCAC	3 cut(s)	75, 1009, 1101
VpaK11BI	GGWCC	1 cut(s)	941
XapI	RAATTY	2 cut(s)	425, 690
XceI	RCATGY	3 cut(s)	967, 1040, 1119
XspI	CTAG	3 cut(s)	572, 849, 989
Zsp2I	ATGCAT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.