Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005429

Physical Location & Seq

Genomic Coordinates Forward (+)

29720591 .. 29733938

Gene Structure 13348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00024010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2883 bp

ATGGCTCCGATTCCGCCAGACAACGGCGTAGAAGGAGACGATGAGCGAGATGAGGGGGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGTGGAAGAAGAAGAGGAGGAAGAGGAGGAGGAGCCGAGGCTCAAGTACCAGAGAATGGGAGGCAGCATTCCTACGCTTCTAGCGAACGACGTCGCTTCGTGTATCGCCGTGGCGGAGCGGATGATCGCGCTCGGGACGCACGGCGGGACAATTCATATTCTCGATTTTCTCGGCAATCAGGTCAAGGAATTTTCTGCTCATACTGCTGCTGTGAATGATCTTAGCTTTGACATAGACGGTGAATATATAGGAAGCTGTTCAGATGATGGGTCTGTCGTAATAAACAGCCTTTTCACAGATGAGAAAATGAAGTTTGAGTATCATCGCCCTATGAAGGCTATTGCTGTAGATCCAGATTATGCAAAAAAATCATCTAGAAGATTTGTAGCTGGTGGGCTCGCAGGCCACTTATACTTCAATACGAAAAGATGGCTTGGCTTTAAAGATCAGGTTTTGCATTCTGGTGAGGGTCCAATACATGCGGTGAAGTGGAGATCAAGTCTCATTGCTTGGGCTAATGATGCAGGCGTGAAAGTATATGATACTGCAAATGATCAGCGCATAACATTCATAGAAAGACCACGTGGAAGCCCACGTCCTGAGCTTTTACTCCCTCACTTAGTTTGGCAGGATGACACACTGTTGGTCATTGCTTGGGGAACATCAATCAAAATCACATCAATAAAAACAAATCAGTCTAAAGCAGCCAATGGCTCATATAGGCCTGTCCCAGTTTCCAGTATGAACCAGGTGGATATTGTGGCATCCTTTAGTACCAGCTATTTCATATCGGGAATTGCCCCTTTTGGTGATTCTTTGGTCGTTCTAGCTTATATCCCTGGTGAAGACGATGGGGAGAAGGAATTTAGTAGCTCTGTTCCATCACGTCAGCAGGGAAATGCACAGAGACCAGAAGTACGCGTTGTGACATGGAATAATGATGAACTTTCAACAGATGCCCTTCCTGTACATGGCTTTGAGCATTACAAGGCAAAGGACTATTCACTTGCTCATGCTCCTTTCTCAGGTAGCAGCTATGCTGGTGGTCAGTGGGCTGAAGGTGATGAACCACTGTACTATATTGTATCACCAAAGGATGTGGTCATAGCAAAACCCAGAGATGCTGAAGATCATATTGCTTGGCTTCTTCAACATGGTGCACACGAAAAAGCTTTGGCTGCAGTTGAAGCTGGCCAGGGACGAAGTGAACTTCTTGACGAGGTTGGTTCTAGATACCTTGATCATTTGATTGTAGAAAGAAAATATGCCGAAGCGGCATCTTTGTGTCCCAAATTGTTGCGAGGATCGGCATCTGCATGGGAAAGATGGGTTTTCCACTTTGCTCATCTGCGTCAGCTTCCAGTACTAGTGCCATATATACCAACAGAAAACCCAAGATTACGTGATACTGCATATGAGGTTGCTCTTGTGGCTATTGCTACAAACCCATCTTTTCATACGGAGCTCTTGTCAACTGTCAGATCATGGCCACCTGTGATTTATTCTGCATTGCCTGTAATCTCTGCTATAGAACCTCAGCTCAACACCTCATCCATGACAGATGCTCTTAAGGAGGCACTAGCAGAGTTGTATGTGATTGATGGGCAATATGAGAAAGCCTTTTCACTATATGCTGATCTTATGAACCCAAATGTATTTGCCTTCATCGAAAAACACAATCTATATGATTCGATTCGGGAAAAGGTCGTCCCACTGATGATGCTGGATTGCAAGCATGCTGTTCCTTTATTGATTCAAAATAAGGACTTGATTACTCCGTCACAAGTTGTCAAACAACTTTTGAATGCGAGTGATAAGTGCGATTCCAGAAATTACTTGCATCTATATTTGCATTCACTATTTGAAGTAGACCCTCATGCTGGAAAAGATTTCCATGATATGCAGGTAGAGCTTTATGCAGACTATGATTCAAAGATGCTGCTTCCTTTTCTTCGTAGTAGTCAACATTATACACTTGAGAAGGCATATGAAATTTGCATCAGAAAGGATCTTGTAAAGGAGCAAGTTTTCATTCTTGGAAGAATGGGAAATGCAAAACAAGCCCTTGCTATAATCATTAATAAACTAGGGGACATTGAAGAGGCTGTAGAATTTGTGAGTATGCAACATGATGATGAACTATGGGAGGAATTGATCCAGCAGTGTCTTCATAAACCTGAGATGGTCGGCGTGCTATTGGAGCACACTGTTGGAAATCTTGATCCTCTTTATATTGTGAATATGGTTCCCAATGGACTGGAGATTCCTCTGCTCAGGGATAGGCTAGTCAAAATTATCACCAATTACAGGACTGAAACATCTCTAAGACATGGGTGCAATGACATCCTTAAGGCTGATATTGTGAACCTCTTGGTCAAATACTACAATGAGGCAAGACATGGAATTTACTTGAGCAATGAAGAAGATGAGGCACGAGCAAAAAGGAATGATGGTAGGACTTCTCAAGTGGTTGAGAAATCATCTGGTGTGAGAAGTATGGAGGTTAAATCAAAATCGAAGGGTGGTGCAAGGTGTTGCATATGTTTTGATCCGTTTTCTATACAGAGTGTTAATGTCATTGTTTTCTTTTGCTGTCATGCTTATCACATGACTTGTCTTATGGATTCCACCTACACTAGTGGAATGAATGGGAGTGGGATCACTTCCCCGGAGAGAGTAACAGATTATGGGTATGATGATAGTGATGTGGATGATGATGGTGATGATGGTCCCCAATCGGGTGGCTCTCGCATGCGTTGTATCTTATGTACTACTGCTAGTGGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019899 GO:0030897 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033263 GO:0033365 GO:0034613 GO:0035542 GO:0042144 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048284 GO:0050789 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0097576 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Clathrin

Protein Analysis

960

Amino Acids

107.29

Weight (kDa)

4.93

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Vps41	PF23411	45 - 402	7.4e-100	Vps42 beta-propeller
Beta-prop_WDR3_1st	PF25173	65 - 134	3e-06	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	69 - 150	4e-06	THOC3 beta-propeller domain
WD40	PF00400	89 - 125	4.5e-06	WD domain, G-beta repeat
TPR_Vps41	PF23556	438 - 778	1.7e-148	Vps41 TPR-like region
Clathrin	PF00637	638 - 756	2.1e-09	Region in Clathrin and VPS
zf-RING_Vps41	PF23555	875 - 918	3.8e-13	Vps41 C-terminal RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08190
fragaria_vesca	FvH4_3g30370 FvH4_3g30370 FvH4_3g30370 FvH4_3g30370 FvH4_3g30370
malus_domestica	MD03G1129800.v1.1 MD11G1151700.v1.1
prunus_persica	Prupe.6G114800_v2.0.a1 Prupe.6G114800_v2.0.a1
pyrus_communis	pycom11g12380 pycom11g12390
rosa_chinensis	RchiOBHm_Chr5g0056311
rosa_laevigata	RLG00000035067 RLG00000035070 RLG00000035077 RLG00000035080 RLG00000035082
rosa_multiflora	Rmu_sc0000680.1_g000003
rosa_roxburghii	Rroxscaffold_1G00024010
rosa_rugosa	Rorug05G0298600 Rorug05G0298700 Rorug05G0298800
rosa_samantha	Rh5AG369600 Rh5BG380500 Rh5CG404000 Rh5DG393600
rosa_wichuraiana	Rw0G004390 Rw0G012630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	186
Acc36I	ACCTGC	1 cut(s)	1987
AccB7I	CCANNNNNTGG	1 cut(s)	148
AccBSI	CCGCTC	1 cut(s)	211
AccI	GTMKAC	1 cut(s)	1962
AccII	CGCG	2 cut(s)	221, 1014
AciI	CCGC	6 cut(s)	14, 206, 211, 237, 575, 1367
AclWI	GGATC	7 cut(s)	437, 1405, 2109, 2242, 2309, 2636, 2759
AcoI	YGGCCR	2 cut(s)	1285, 1580
AcsI	RAATTY	5 cut(s)	281, 956, 2085, 2204, 2496
AcuI	CTGAAG	2 cut(s)	1170, 1239
AcvI	CACGTG	1 cut(s)	677
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	7 cut(s)	140, 868, 1011, 1062, 1169, 1458, 2863
AfiI	CCNNNNNNNGG	8 cut(s)	23, 148, 427, 1064, 1118, 1973, 2400, 2831
AflII	CTTAAG	2 cut(s)	1661, 2441
AflIII	ACRYGT	1 cut(s)	1012
AgsI	TTSAA	9 cut(s)	511, 1044, 1244, 1280, 1850, 1897, 1958, 2025, 2192
AhlI	ACTAGT	2 cut(s)	1459, 2729
AjiI	CACGTC	2 cut(s)	689, 980
AjnI	CCWGG	3 cut(s)	840, 931, 1287
Alw21I	GWGCWC	3 cut(s)	1255, 1560, 2298
Alw26I	GTCTC	3 cut(s)	30, 599, 994
Alw44I	GTGCAC	1 cut(s)	1251
AlwI	GGATC	7 cut(s)	437, 1405, 2109, 2242, 2309, 2636, 2759
Ama87I	CYCGRG	1 cut(s)	224
AoxI	GGCC	4 cut(s)	496, 815, 1285, 1580
ApaLI	GTGCAC	1 cut(s)	1251
ApeKI	GCWGC	6 cut(s)	156, 299, 797, 1125, 1271, 2032
ApoI	RAATTY	5 cut(s)	281, 956, 2085, 2204, 2496
AseI	ATTAAT	1 cut(s)	2172
Asp700I	GAANNNNTTC	1 cut(s)	349
AspLEI	GCGC	2 cut(s)	223, 654
AspS9I	GGNCC	2 cut(s)	563, 2822
AsuC2I	CCSGG	1 cut(s)	2762
AsuHPI	GGTGA	9 cut(s)	344, 569, 589, 914, 947, 1166, 1173, 2383, 2825
AvaI	CYCGRG	1 cut(s)	224
AvaII	GGWCC	2 cut(s)	563, 2822
BaeGI	GKGCMC	1 cut(s)	1255
BalI	TGGCCA	2 cut(s)	1287, 1582
BanII	GRGCYC	2 cut(s)	492, 1560
BauI	CACGAG	1 cut(s)	2526
BbrPI	CACGTG	1 cut(s)	677
BbsI	GAAGAC	2 cut(s)	945, 2252
Bbv12I	GWGCWC	3 cut(s)	1255, 1560, 2298
BbvCI	CCTCAGC	1 cut(s)	1629
BbvI	GCAGC	6 cut(s)	168, 286, 809, 1137, 1258, 2019
BceAI	ACGGC	3 cut(s)	40, 185, 250
BciT130I	CCWGG	3 cut(s)	842, 933, 1289
BclI	TGATCA	2 cut(s)	646, 1333
BcnI	CCSGG	1 cut(s)	2762
BcoDI	GTCTC	3 cut(s)	30, 599, 994
BcuI	ACTAGT	2 cut(s)	1459, 2729
BfmI	CTRYAG	4 cut(s)	438, 1272, 1620, 2199
BfrI	CTTAAG	2 cut(s)	1661, 2441
BfuAI	ACCTGC	1 cut(s)	1987
BglI	GCCNNNNNGGC	1 cut(s)	1367
BisI	GCNGC	7 cut(s)	157, 300, 798, 1126, 1272, 1368, 2033
BlsI	GCNGC	7 cut(s)	158, 301, 799, 1127, 1273, 1369, 2034
BmcAI	AGTACT	1 cut(s)	1458
Bme1390I	CCNGG	4 cut(s)	842, 933, 1289, 2762
Bme18I	GGWCC	2 cut(s)	563, 2822
BmeT110I	CYCGRG	1 cut(s)	224
BmgBI	CACGTC	2 cut(s)	689, 980
BmgT120I	GGNCC	2 cut(s)	563, 2822
BmiI	GGNNCC	5 cut(s)	6, 126, 564, 2340, 2824
BmrFI	CCNGG	4 cut(s)	842, 933, 1289, 2762
BmrI	ACTGGG	1 cut(s)	818
BmuI	ACTGGG	1 cut(s)	818
BpiI	GAAGAC	2 cut(s)	945, 2252
BpmI	CTGGAG	1 cut(s)	2372
Bpu10I	CCTNAGC	3 cut(s)	693, 1629, 2366
BpuEI	CTTGAG	4 cut(s)	119, 2090, 2524, 2541
BpuMI	CCSGG	1 cut(s)	2762
BsaAI	YACGTR	2 cut(s)	677, 1496
BsaBI	GATNNNNATC	1 cut(s)	1402
BsaHI	GRCGYC	1 cut(s)	183
BsaI	GGTCTC	1 cut(s)	994
BsaJI	CCNNGG	5 cut(s)	128, 201, 931, 1288, 2760
BsaXI	ACNNNNNCTCC	4 cut(s)	577, 607, 1547, 1577
Bsc4I	CCNNNNNNNGG	8 cut(s)	23, 148, 427, 1064, 1118, 1973, 2400, 2831
Bse1I	ACTGG	4 cut(s)	824, 831, 1454, 2355
Bse3DI	GCAATG	5 cut(s)	597, 741, 1601, 2437, 2515
Bse8I	GATNNNNATC	1 cut(s)	1402
BseBI	CCWGG	3 cut(s)	842, 933, 1289
BseDI	CCNNGG	5 cut(s)	128, 201, 931, 1288, 2760
BseGI	GGATG	7 cut(s)	219, 730, 857, 1195, 1643, 2436, 2809
BseJI	GATNNNNATC	1 cut(s)	1402
BseLI	CCNNNNNNNGG	8 cut(s)	23, 148, 427, 1064, 1118, 1973, 2400, 2831
BseMI	GCAATG	5 cut(s)	597, 741, 1601, 2437, 2515
BseMII	CTCAG	5 cut(s)	684, 1131, 1643, 2262, 2380
BseNI	ACTGG	4 cut(s)	824, 831, 1454, 2355
BseSI	GKGCMC	1 cut(s)	1255
BseXI	GCAGC	6 cut(s)	168, 286, 809, 1137, 1258, 2019
Bsh1236I	CGCG	2 cut(s)	221, 1014
BshFI	GGCC	4 cut(s)	498, 817, 1287, 1582
BsiHKAI	GWGCWC	3 cut(s)	1255, 1560, 2298
BsiHKCI	CYCGRG	1 cut(s)	224
BsiSI	CCGG	1 cut(s)	2762
BslFI	GGGAC	8 cut(s)	241, 253, 806, 1305, 1365, 1787, 2198, 2808
BslI	CCNNNNNNNGG	8 cut(s)	23, 148, 427, 1064, 1118, 1973, 2400, 2831
BsmAI	GTCTC	3 cut(s)	30, 599, 994
BsmBI	CGTCTC	1 cut(s)	30
BsmFI	GGGAC	8 cut(s)	241, 253, 806, 1305, 1365, 1787, 2198, 2808
BsmI	GAATGC	4 cut(s)	159, 550, 1903, 1945
BsnI	GGCC	4 cut(s)	498, 817, 1287, 1582
Bso31I	GGTCTC	1 cut(s)	994
BsoBI	CYCGRG	1 cut(s)	224
Bsp1286I	GDGCHC	4 cut(s)	492, 1255, 1560, 2298
Bsp1407I	TGTACA	1 cut(s)	1060
BspACI	CCGC	6 cut(s)	14, 206, 211, 237, 575, 1367
BspANI	GGCC	4 cut(s)	498, 817, 1287, 1582
BspCNI	CTCAG	5 cut(s)	685, 1130, 1642, 2263, 2379
BspFNI	CGCG	2 cut(s)	221, 1014
BspLI	GGNNCC	5 cut(s)	6, 126, 564, 2340, 2824
BspMAI	CTGCAG	1 cut(s)	1276
BspMI	ACCTGC	1 cut(s)	1987
BspPI	GGATC	7 cut(s)	437, 1405, 2109, 2242, 2309, 2636, 2759
BspTI	CTTAAG	2 cut(s)	1661, 2441
BspTNI	GGTCTC	1 cut(s)	994
BsrBI	CCGCTC	1 cut(s)	211
BsrDI	GCAATG	5 cut(s)	597, 741, 1601, 2437, 2515
BsrGI	TGTACA	1 cut(s)	1060
BsrI	ACTGG	4 cut(s)	824, 831, 1454, 2355
BssECI	CCNNGG	5 cut(s)	128, 201, 931, 1288, 2760
BssNI	GRCGYC	1 cut(s)	183
BssSI	CACGAG	1 cut(s)	2526
Bst2BI	CACGAG	1 cut(s)	2526
Bst2UI	CCWGG	3 cut(s)	842, 933, 1289
Bst4CI	ACNGT	5 cut(s)	332, 735, 1167, 1570, 2302
Bst6I	CTCTTC	4 cut(s)	60, 99, 108, 2187
BstACI	GRCGYC	1 cut(s)	183
BstAFI	CTTAAG	2 cut(s)	1661, 2441
BstAUI	TGTACA	1 cut(s)	1060
BstBAI	YACGTR	2 cut(s)	677, 1496
BstC8I	GCNNGC	8 cut(s)	492, 496, 619, 1285, 1826, 1830, 2285, 2846
BstDEI	CTNAG	9 cut(s)	314, 693, 712, 1117, 1629, 2271, 2366, 2417, 2880
BstDSI	CCRYGG	1 cut(s)	201
BstENI	CCTNNNNNAGG	1 cut(s)	1116
BstF5I	GGATG	7 cut(s)	219, 730, 857, 1195, 1643, 2436, 2809
BstFNI	CGCG	2 cut(s)	221, 1014
BstHHI	GCGC	2 cut(s)	223, 654
BstMAI	GTCTC	3 cut(s)	30, 599, 994
BstNI	CCWGG	3 cut(s)	842, 933, 1289
BstNSI	RCATGY	3 cut(s)	575, 1832, 2848
BstSCI	CCNGG	4 cut(s)	840, 931, 1287, 2760
BstSFI	CTRYAG	4 cut(s)	438, 1272, 1620, 2199
BstSLI	GKGCMC	1 cut(s)	1255
BstUI	CGCG	2 cut(s)	221, 1014
BstV1I	GCAGC	6 cut(s)	168, 286, 809, 1137, 1258, 2019
BstV2I	GAAGAC	2 cut(s)	945, 2252
BstX2I	RGATCY	2 cut(s)	442, 2101
BstXI	CCANNNNNNTGG	2 cut(s)	2350, 2834
BstYI	RGATCY	2 cut(s)	442, 2101
BsuRI	GGCC	4 cut(s)	498, 817, 1287, 1582
BtgI	CCRYGG	1 cut(s)	201
BtgZI	GCGATG	1 cut(s)	401
BtrI	CACGTC	2 cut(s)	689, 980
BtsCI	GGATG	7 cut(s)	219, 730, 857, 1195, 1643, 2436, 2809
BtsI	GCAGTG	1 cut(s)	2261
BtsIMutI	CAGTG	6 cut(s)	731, 1148, 1163, 1805, 2261, 2298
BveI	ACCTGC	1 cut(s)	1987
Cac8I	GCNNGC	8 cut(s)	492, 496, 619, 1285, 1826, 1830, 2285, 2846
CfoI	GCGC	2 cut(s)	223, 654
Cfr13I	GGNCC	2 cut(s)	563, 2822
CseI	GACGC	2 cut(s)	238, 1433
CsiI	ACCWGGT	1 cut(s)	840
Csp6I	GTAC	7 cut(s)	139, 867, 1010, 1061, 1168, 1457, 2862
CspCI	CAANNNNNGTGG	2 cut(s)	1173, 1208
CviQI	GTAC	7 cut(s)	139, 867, 1010, 1061, 1168, 1457, 2862
DdeI	CTNAG	9 cut(s)	314, 693, 712, 1117, 1629, 2271, 2366, 2417, 2880
DraI	TTTAAA	1 cut(s)	535
EaeI	YGGCCR	2 cut(s)	1285, 1580
Eam1104I	CTCTTC	4 cut(s)	60, 99, 108, 2187
EarI	CTCTTC	4 cut(s)	60, 99, 108, 2187
EciI	GGCGGA	1 cut(s)	221
Ecl136II	GAGCTC	1 cut(s)	1558
Eco147I	AGGCCT	1 cut(s)	817
Eco24I	GRGCYC	2 cut(s)	492, 1560
Eco31I	GGTCTC	1 cut(s)	994
Eco47I	GGWCC	2 cut(s)	563, 2822
Eco53kI	GAGCTC	1 cut(s)	1558
Eco57I	CTGAAG	2 cut(s)	1170, 1239
Eco72I	CACGTG	1 cut(s)	677
Eco88I	CYCGRG	1 cut(s)	224
EcoICRI	GAGCTC	1 cut(s)	1558
EcoNI	CCTNNNNNAGG	1 cut(s)	1116
EcoRII	CCWGG	3 cut(s)	840, 931, 1287
EcoT38I	GRGCYC	2 cut(s)	492, 1560
Esp3I	CGTCTC	1 cut(s)	30
FaqI	GGGAC	8 cut(s)	241, 253, 806, 1305, 1365, 1787, 2198, 2808
FauI	CCCGC	1 cut(s)	230
FauNDI	CATATG	3 cut(s)	1507, 2080, 2633
FbaI	TGATCA	2 cut(s)	646, 1333
FblI	GTMKAC	1 cut(s)	1962
Fnu4HI	GCNGC	7 cut(s)	157, 300, 798, 1126, 1272, 1368, 2033
FokI	GGATG	7 cut(s)	226, 737, 844, 1202, 1630, 2423, 2816
FriOI	GRGCYC	2 cut(s)	492, 1560
Fsp4HI	GCNGC	7 cut(s)	157, 300, 798, 1126, 1272, 1368, 2033
GlaI	GCGC	2 cut(s)	222, 653
GluI	GCNGC	7 cut(s)	157, 300, 798, 1126, 1272, 1368, 2033
GsuI	CTGGAG	1 cut(s)	2372
HaeIII	GGCC	4 cut(s)	498, 817, 1287, 1582
HapII	CCGG	1 cut(s)	2762
HgaI	GACGC	2 cut(s)	238, 1433
HhaI	GCGC	2 cut(s)	223, 654
Hin1I	GRCGYC	1 cut(s)	183
Hin6I	GCGC	2 cut(s)	221, 652
HinP1I	GCGC	2 cut(s)	221, 652
HincII	GTYRAC	2 cut(s)	1566, 2057
HindII	GTYRAC	2 cut(s)	1566, 2057
HindIII	AAGCTT	1 cut(s)	1263
HinfI	GANTC	9 cut(s)	10, 905, 1781, 1786, 1846, 1916, 2021, 2356, 2717
HpaII	CCGG	1 cut(s)	2762
HphI	GGTGA	9 cut(s)	344, 569, 589, 914, 947, 1166, 1173, 2383, 2825
Hpy166II	GTNNAC	6 cut(s)	1253, 1301, 1566, 1963, 2057, 2458
Hpy188I	TCNGA	4 cut(s)	9, 355, 1574, 2096
Hpy8I	GTNNAC	6 cut(s)	1253, 1301, 1566, 1963, 2057, 2458
Hpy99I	CGWCG	2 cut(s)	185, 188
HpyAV	CCTTC	8 cut(s)	26, 421, 946, 1064, 1145, 1765, 2068, 2605
HpyCH4III	ACNGT	5 cut(s)	332, 735, 1167, 1570, 2302
HpyCH4IV	ACGT	5 cut(s)	183, 676, 688, 979, 1495
HpyF3I	CTNAG	9 cut(s)	314, 693, 712, 1117, 1629, 2271, 2366, 2417, 2880
HpySE526I	ACGT	5 cut(s)	183, 676, 688, 979, 1495
Hsp92I	GRCGYC	1 cut(s)	183
HspAI	GCGC	2 cut(s)	221, 652
Ksp22I	TGATCA	2 cut(s)	646, 1333
LmnI	GCTCC	8 cut(s)	10, 124, 208, 1114, 1555, 2113, 2293, 2876
Lsp1109I	GCAGC	6 cut(s)	168, 286, 809, 1137, 1258, 2019
MabI	ACCWGGT	1 cut(s)	840
MaeII	ACGT	5 cut(s)	183, 676, 688, 979, 1495
MaeIII	GTNAC	3 cut(s)	1018, 1872, 2770
MbiI	CCGCTC	1 cut(s)	211
MflI	RGATCY	2 cut(s)	442, 2101
MhlI	GDGCHC	4 cut(s)	492, 1255, 1560, 2298
MlsI	TGGCCA	2 cut(s)	1287, 1582
MluI	ACGCGT	1 cut(s)	1012
MluNI	TGGCCA	2 cut(s)	1287, 1582
MmeI	TCCRAC	1 cut(s)	2284
Mox20I	TGGCCA	2 cut(s)	1287, 1582
MroXI	GAANNNNTTC	1 cut(s)	349
MscI	TGGCCA	2 cut(s)	1287, 1582
MseI	TTAA	6 cut(s)	534, 1662, 2172, 2442, 2598, 2664
MslI	CAYNNNNRTG	4 cut(s)	555, 1375, 1408, 2226
Msp20I	TGGCCA	2 cut(s)	1287, 1582
MspCI	CTTAAG	2 cut(s)	1661, 2441
MspI	CCGG	1 cut(s)	2762
MspR9I	CCNGG	4 cut(s)	842, 933, 1289, 2762
Mva1269I	GAATGC	4 cut(s)	159, 550, 1903, 1945
MvaI	CCWGG	3 cut(s)	842, 933, 1289
MvnI	CGCG	2 cut(s)	221, 1014
NciI	CCSGG	1 cut(s)	2762
NdeI	CATATG	3 cut(s)	1507, 2080, 2633
NlaIV	GGNNCC	5 cut(s)	6, 126, 564, 2340, 2824
NmeAIII	GCCGAG	2 cut(s)	153, 243
NmuCI	GTSAC	2 cut(s)	1018, 1872
NspI	RCATGY	3 cut(s)	575, 1832, 2848
PaeI	GCATGC	2 cut(s)	1832, 2848
PceI	AGGCCT	1 cut(s)	817
PcsI	WCGNNNNNNNCGW	1 cut(s)	173
PctI	GAATGC	4 cut(s)	159, 550, 1903, 1945
PdmI	GAANNNNTTC	1 cut(s)	349
PfeI	GAWTC	9 cut(s)	10, 905, 1781, 1786, 1846, 1916, 2021, 2356, 2717
PflMI	CCANNNNNTGG	1 cut(s)	148
PkrI	GCNGC	7 cut(s)	158, 301, 799, 1127, 1273, 1369, 2034
PmaCI	CACGTG	1 cut(s)	677
PmlI	CACGTG	1 cut(s)	677
Ppu21I	YACGTR	2 cut(s)	677, 1496
PshBI	ATTAAT	1 cut(s)	2172
Psp124BI	GAGCTC	1 cut(s)	1560
Psp6I	CCWGG	3 cut(s)	840, 931, 1287
PspCI	CACGTG	1 cut(s)	677
PspGI	CCWGG	3 cut(s)	840, 931, 1287
PspN4I	GGNNCC	5 cut(s)	6, 126, 564, 2340, 2824
PspPI	GGNCC	2 cut(s)	563, 2822
PstI	CTGCAG	1 cut(s)	1276
PsuI	RGATCY	2 cut(s)	442, 2101
RsaI	GTAC	7 cut(s)	140, 868, 1011, 1062, 1169, 1458, 2863
RsaNI	GTAC	7 cut(s)	139, 867, 1010, 1061, 1168, 1457, 2862
RseI	CAYNNNNRTG	4 cut(s)	555, 1375, 1408, 2226
SacI	GAGCTC	1 cut(s)	1560
SaqAI	TTAA	6 cut(s)	534, 1662, 2172, 2442, 2598, 2664
SatI	GCNGC	7 cut(s)	157, 300, 798, 1126, 1272, 1368, 2033
Sau96I	GGNCC	2 cut(s)	563, 2822
ScaI	AGTACT	1 cut(s)	1458
ScrFI	CCNGG	4 cut(s)	842, 933, 1289, 2762
SduI	GDGCHC	4 cut(s)	492, 1255, 1560, 2298
SexAI	ACCWGGT	1 cut(s)	840
SfcI	CTRYAG	4 cut(s)	438, 1272, 1620, 2199
SinI	GGWCC	2 cut(s)	563, 2822
SmiMI	CAYNNNNRTG	4 cut(s)	555, 1375, 1408, 2226
SmlI	CTYRAG	6 cut(s)	134, 1661, 2069, 2441, 2503, 2556
SmoI	CTYRAG	6 cut(s)	134, 1661, 2069, 2441, 2503, 2556
SpeI	ACTAGT	2 cut(s)	1459, 2729
SphI	GCATGC	2 cut(s)	1832, 2848
SseBI	AGGCCT	1 cut(s)	817
SsiI	CCGC	6 cut(s)	14, 206, 211, 237, 575, 1367
SstI	GAGCTC	1 cut(s)	1560
StuI	AGGCCT	1 cut(s)	817
StyD4I	CCNGG	4 cut(s)	840, 931, 1287, 2760
TaaI	ACNGT	5 cut(s)	332, 735, 1167, 1570, 2302
TaiI	ACGT	5 cut(s)	186, 679, 691, 982, 1498
TaqI	TCGA	4 cut(s)	255, 1761, 1784, 2609
TatI	WGTACW	4 cut(s)	1060, 1167, 1456, 2861
TauI	GCSGC	1 cut(s)	1370
TfiI	GAWTC	9 cut(s)	10, 905, 1781, 1786, 1846, 1916, 2021, 2356, 2717
Tru1I	TTAA	6 cut(s)	534, 1662, 2172, 2442, 2598, 2664
Tru9I	TTAA	6 cut(s)	534, 1662, 2172, 2442, 2598, 2664
TscAI	CASTG	6 cut(s)	738, 1148, 1170, 1812, 2261, 2305
TseFI	GTSAC	2 cut(s)	1018, 1872
TseI	GCWGC	6 cut(s)	156, 299, 797, 1125, 1271, 2032
Tsp45I	GTSAC	2 cut(s)	1018, 1872
TspGWI	ACGGA	3 cut(s)	1568, 1860, 2634
TspRI	CASTG	6 cut(s)	738, 1148, 1170, 1812, 2261, 2305
Van91I	CCANNNNNTGG	1 cut(s)	148
Vha464I	CTTAAG	2 cut(s)	1661, 2441
VneI	GTGCAC	1 cut(s)	1251
VpaK11BI	GGWCC	2 cut(s)	563, 2822
VspI	ATTAAT	1 cut(s)	2172
XagI	CCTNNNNNAGG	1 cut(s)	1116
XapI	RAATTY	5 cut(s)	281, 956, 2085, 2204, 2496
XbaI	TCTAGA	2 cut(s)	467, 1322
XceI	RCATGY	3 cut(s)	575, 1832, 2848
XmiI	GTMKAC	1 cut(s)	1962
XmnI	GAANNNNTTC	1 cut(s)	349
ZraI	GACGTC	1 cut(s)	184
ZrmI	AGTACT	1 cut(s)	1458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.