Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005429

Physical Location & Seq

Genomic Coordinates Reverse (-)

53943676 .. 53958790

Gene Structure 15115 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG404000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2481 bp

ATGAAGTTTGAGTATCATCGCCCTATGAAGGCTATTGCTGTAGATCCAGATTATGCAAAAAAATCATCTAGAAGATTTGTAGCTGGTGGGCTCGCAGGCCACTTATACTTCAATGCGAAAAGATGGCTTGGCTTTAAAGATCAGGTTTTGCATTCTGGTGAGGGTCCAATACATGCGGTGAAGTGGAGATCAAGTCTCATTGCTTGGGCTAATGATGCAGGCGTGAAAGTATATGATACAGCAAATGATCAGCGCATAACATTCATAGAAAGACCACGTGGAAGCCCACGTCCTGAGCTTTTGCTCCCTCACTTAGTTTGGCAGGATGACACACTGTTGGTCATTGCTTGGGGAACATCAATCAAAATCACATCAATAAAAACAAATCAGTCTAAAGCAGCCAATGGCTCATATAGGCCTGTCCCAGTTTCCAGTATGAACCAGGTGGATATTGTGGCATCCTTTAGTACCAGCTATTTCATATCGGGAATTGCCCCTTTTGGTGATTCTTTGGTCGTTCTAGCTTATATCCCTGGTGAAGACGATGGGGAGAAGGAATTTAGTAGCTCTGTTCCATCACGTCAGGGAAATGCACAGAGACCAGAAGTACGCGTTGTGACATGGAATAATGATGAACTTTCAACAGATGCCCTTCCTGTACATGGCTTTGAGCATTACAAGGCAAAGGACTATTCACTTGCTCATGCTCCTTTCTCAGGTAGCAGCTATGCTGGTGGTCAGTGGGCTGAAGGTGATGAACCACTGTACTATATTGTATCACCAAAGGATGTGGTCATAGCAAAACCCAGAGATGCTGAAGATCATATTGCTTGGCTTCTTCAACATGGTGCACACGAAAAAGCTTTGGCTGCAGTTGAAGCTGGCCAGGGACGAAGTGAACTTCTTGATGAGGTTGGTTCTAGATACCTTGATCATTTGATTGTGGAAAGAAAATATGCCGAAGCAGCATCTTTGTGTCCCAAATTGTTGCGAGGATCGGCATCTGCATGGGAAAGATGGGTTTTCCACTTTGCTCATCTGCGTCAGCTTCCAGTACTAGTGCCATATATACCAACAGAAAACCCAAGATTACGTGATACTGCATATGAGGTTGCTCTTGTGGCTATTGCTACAAACCCATCTTTTCATTCGGAGCTCTTGTCAACTGTCAGATCATGGCCACCTGTGATTTATTCTGCATTGCCTGTAATCTCTGCTATAGAACCTCAGCTCAACACATCCTCCATGACAGATGCTCTTAAGGAGGCACTAGCAGAGTTGTATGTGATTGATGGGCAATATGAGAAAGCCTTTTCACTATATGCTGATCTTATGAACCCAAATGTATTTGCCTTCATCGAAAAACACAATCTATATGATTCGATTCGGGAAAAGGTCGTCCCACTGATGATGCTGGATTGCAAGCATGCTGTTCCTTTATTGATTCAAAATAAGGACTTGATTACTCCGTCTCAAGTTGTCAAACAACTTTTGAATGCGAGTGATAAGTGCGATTCCAGAAATTACTTGCATCTATATTTGCATTCACTATTTGAAGTAGACCCTCATGCTGGAAAAGATTTCCATGATATGCAGGTAGAGCTTTATGCAGACTATGATTCAAAGATGCTACTTCCTTTTCTTCGTAGTAGTCAACATTATACACTTGAGAAGGCATATGAAATTTGCATCAGAAAGGATCTTGTAAAGGAGCAAGTTTTCATTCTTGGAAGAATGGGAAATGCAAAACAAGCCCTTGCTATAATCATTAATAAACTAGGGGACATTGAAGAGGCTGTAGAATTTGTGAGTATGCAACATGATGATGAACTATGGGAGGAATTGATCCAGCAGTGTCTTCATAAACCTGAGATGGTCGGCGTGCTATTGGAGCACACTGTTGGAAATCTTGATCCTCTTTATATTGTGAATATGGTTCCCAATGGACTGGAGATTCCTCTGCTCAGGGATAGGCTAGTCAAAATTATCACCAATTACAGGACTGAAACATCTCTAAGACATGGGTGCAATGACATCCTTAAGGCTGATATTGTGAACCTCTTGGTCAAATACTACAATGAGGCAAGACATGGAATTTACTTGAGCAATGAAGAAGATGAGGCACGAGCAAAAAGGAATGATGGTAGGACTTCTCAAGTGGTTGAGAAATCATCTGGTGTGAGAAGTATGGAGGTTAAATCAAAATCGAAGGGTGGTGCAAGGTGTTGCATATGTTTCGATCCGTTTTCTATACAGAGTGTTAATGTCATTGTTTTCTTTTGCTGTCATGCTTATCACATGACTTGTCTTATGGATTCCACCTACACTAGTGGAATGAATGGGAGTGGGATCACTTCCCCGGAGAGAGTAACAGATTATGGGTATGATGATAGTGATGTAGATGATGATGGTGATGATGGTCCCCAATCGGGTGGCTCTCGCATGCGTTGTATCTTATGTACTACTGCTAGTGGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019899 GO:0030897 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033263 GO:0033365 GO:0034613 GO:0035542 GO:0042144 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048284 GO:0050789 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0097576 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Clathrin

Protein Analysis

826

Amino Acids

92.5

Weight (kDa)

5.7

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Vps41	PF23411	3 - 268	4.8e-65	Vps42 beta-propeller
TPR_Vps41	PF23556	304 - 644	1.2e-148	Vps41 TPR-like region
Clathrin	PF00637	504 - 622	1.7e-09	Region in Clathrin and VPS
zf-RING_Vps41	PF23555	741 - 784	3.2e-13	Vps41 C-terminal RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08190
fragaria_vesca	FvH4_3g30370 FvH4_3g30370 FvH4_3g30370 FvH4_3g30370 FvH4_3g30370
malus_domestica	MD03G1129800.v1.1 MD11G1151700.v1.1
prunus_persica	Prupe.6G114800_v2.0.a1 Prupe.6G114800_v2.0.a1
pyrus_communis	pycom11g12380 pycom11g12390
rosa_chinensis	RchiOBHm_Chr5g0056311
rosa_laevigata	RLG00000035067 RLG00000035070 RLG00000035077 RLG00000035080 RLG00000035082
rosa_multiflora	Rmu_sc0000680.1_g000003
rosa_roxburghii	Rroxscaffold_1G00024010
rosa_rugosa	Rorug05G0298600 Rorug05G0298700 Rorug05G0298800
rosa_samantha	Rh5AG369600 Rh5BG380500 Rh5CG404000 Rh5DG393600
rosa_wichuraiana	Rw0G004390 Rw0G012630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1585
AccI	GTMKAC	1 cut(s)	1560
AccII	CGCG	1 cut(s)	612
AciI	CCGC	1 cut(s)	176
AclWI	GGATC	7 cut(s)	38, 1003, 1707, 1840, 1907, 2234, 2357
AcoI	YGGCCR	2 cut(s)	883, 1178
AcsI	RAATTY	4 cut(s)	557, 1683, 1802, 2094
AcuI	CTGAAG	2 cut(s)	768, 837
AcvI	CACGTG	1 cut(s)	278
AfaI	GTAC	6 cut(s)	469, 609, 660, 767, 1056, 2461
AfiI	CCNNNNNNNGG	6 cut(s)	28, 662, 716, 1571, 1998, 2429
AflII	CTTAAG	2 cut(s)	1259, 2039
AflIII	ACRYGT	1 cut(s)	610
AgsI	TTSAA	9 cut(s)	112, 642, 842, 878, 1448, 1495, 1556, 1623, 1790
AhlI	ACTAGT	2 cut(s)	1057, 2327
AjiI	CACGTC	2 cut(s)	290, 581
AjnI	CCWGG	3 cut(s)	441, 532, 885
Alw21I	GWGCWC	3 cut(s)	853, 1158, 1896
Alw26I	GTCTC	3 cut(s)	200, 592, 1476
Alw44I	GTGCAC	1 cut(s)	849
AlwI	GGATC	7 cut(s)	38, 1003, 1707, 1840, 1907, 2234, 2357
AoxI	GGCC	4 cut(s)	97, 416, 883, 1178
ApaLI	GTGCAC	1 cut(s)	849
ApeKI	GCWGC	4 cut(s)	398, 723, 869, 965
ApoI	RAATTY	4 cut(s)	557, 1683, 1802, 2094
AseI	ATTAAT	1 cut(s)	1770
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	2 cut(s)	164, 2420
AsuC2I	CCSGG	1 cut(s)	2360
AsuHPI	GGTGA	8 cut(s)	170, 190, 515, 548, 764, 771, 1981, 2423
AvaII	GGWCC	2 cut(s)	164, 2420
BaeGI	GKGCMC	1 cut(s)	853
BalI	TGGCCA	2 cut(s)	885, 1180
BanII	GRGCYC	2 cut(s)	93, 1158
BauI	CACGAG	1 cut(s)	2124
BbrPI	CACGTG	1 cut(s)	278
BbsI	GAAGAC	2 cut(s)	546, 1850
Bbv12I	GWGCWC	3 cut(s)	853, 1158, 1896
BbvCI	CCTCAGC	1 cut(s)	1227
BbvI	GCAGC	4 cut(s)	410, 735, 856, 977
BcgI	CGANNNNNNTGC	2 cut(s)	2218, 2252
BciT130I	CCWGG	3 cut(s)	443, 534, 887
BclI	TGATCA	2 cut(s)	247, 931
BcnI	CCSGG	1 cut(s)	2360
BcoDI	GTCTC	3 cut(s)	200, 592, 1476
BcuI	ACTAGT	2 cut(s)	1057, 2327
BfaI	CTAG	9 cut(s)	69, 521, 921, 1058, 1271, 1778, 1976, 2328, 2469
BfmI	CTRYAG	4 cut(s)	39, 870, 1218, 1797
BfrI	CTTAAG	2 cut(s)	1259, 2039
BfuAI	ACCTGC	1 cut(s)	1585
BisI	GCNGC	4 cut(s)	399, 724, 870, 966
BlsI	GCNGC	4 cut(s)	400, 725, 871, 967
BmcAI	AGTACT	1 cut(s)	1056
Bme1390I	CCNGG	4 cut(s)	443, 534, 887, 2360
Bme18I	GGWCC	2 cut(s)	164, 2420
BmgBI	CACGTC	2 cut(s)	290, 581
BmgT120I	GGNCC	2 cut(s)	164, 2420
BmiI	GGNNCC	3 cut(s)	165, 1938, 2422
BmrFI	CCNGG	4 cut(s)	443, 534, 887, 2360
BmrI	ACTGGG	1 cut(s)	419
BmuI	ACTGGG	1 cut(s)	419
BpiI	GAAGAC	2 cut(s)	546, 1850
BpmI	CTGGAG	1 cut(s)	1970
Bpu10I	CCTNAGC	3 cut(s)	294, 1227, 1964
BpuEI	CTTGAG	4 cut(s)	1458, 1688, 2122, 2139
BpuMI	CCSGG	1 cut(s)	2360
BsaAI	YACGTR	2 cut(s)	278, 1094
BsaBI	GATNNNNATC	1 cut(s)	1000
BsaI	GGTCTC	1 cut(s)	592
BsaJI	CCNNGG	3 cut(s)	532, 886, 2358
BsaXI	ACNNNNNCTCC	6 cut(s)	178, 208, 1145, 1175, 1226, 1256
Bsc4I	CCNNNNNNNGG	6 cut(s)	28, 662, 716, 1571, 1998, 2429
Bse1I	ACTGG	4 cut(s)	425, 432, 1052, 1953
Bse3DI	GCAATG	5 cut(s)	198, 342, 1199, 2035, 2113
Bse8I	GATNNNNATC	1 cut(s)	1000
BseBI	CCWGG	3 cut(s)	443, 534, 887
BseDI	CCNNGG	3 cut(s)	532, 886, 2358
BseGI	GGATG	5 cut(s)	331, 458, 793, 1238, 2034
BseJI	GATNNNNATC	1 cut(s)	1000
BseLI	CCNNNNNNNGG	6 cut(s)	28, 662, 716, 1571, 1998, 2429
BseMI	GCAATG	5 cut(s)	198, 342, 1199, 2035, 2113
BseMII	CTCAG	5 cut(s)	285, 729, 1241, 1860, 1978
BseNI	ACTGG	4 cut(s)	425, 432, 1052, 1953
BseSI	GKGCMC	1 cut(s)	853
BseXI	GCAGC	4 cut(s)	410, 735, 856, 977
Bsh1236I	CGCG	1 cut(s)	612
BshFI	GGCC	4 cut(s)	99, 418, 885, 1180
BsiHKAI	GWGCWC	3 cut(s)	853, 1158, 1896
BsiSI	CCGG	1 cut(s)	2360
BslFI	GGGAC	6 cut(s)	407, 903, 963, 1385, 1796, 2406
BslI	CCNNNNNNNGG	6 cut(s)	28, 662, 716, 1571, 1998, 2429
BsmAI	GTCTC	3 cut(s)	200, 592, 1476
BsmBI	CGTCTC	1 cut(s)	1476
BsmFI	GGGAC	6 cut(s)	407, 903, 963, 1385, 1796, 2406
BsmI	GAATGC	3 cut(s)	151, 1501, 1543
BsnI	GGCC	4 cut(s)	99, 418, 885, 1180
Bso31I	GGTCTC	1 cut(s)	592
Bsp1286I	GDGCHC	4 cut(s)	93, 853, 1158, 1896
Bsp1407I	TGTACA	1 cut(s)	658
BspACI	CCGC	1 cut(s)	176
BspANI	GGCC	4 cut(s)	99, 418, 885, 1180
BspCNI	CTCAG	5 cut(s)	286, 728, 1240, 1861, 1977
BspFNI	CGCG	1 cut(s)	612
BspLI	GGNNCC	3 cut(s)	165, 1938, 2422
BspMAI	CTGCAG	1 cut(s)	874
BspMI	ACCTGC	1 cut(s)	1585
BspPI	GGATC	7 cut(s)	38, 1003, 1707, 1840, 1907, 2234, 2357
BspTI	CTTAAG	2 cut(s)	1259, 2039
BspTNI	GGTCTC	1 cut(s)	592
BsrDI	GCAATG	5 cut(s)	198, 342, 1199, 2035, 2113
BsrGI	TGTACA	1 cut(s)	658
BsrI	ACTGG	4 cut(s)	425, 432, 1052, 1953
BssECI	CCNNGG	3 cut(s)	532, 886, 2358
BssSI	CACGAG	1 cut(s)	2124
Bst2BI	CACGAG	1 cut(s)	2124
Bst2UI	CCWGG	3 cut(s)	443, 534, 887
Bst4CI	ACNGT	4 cut(s)	336, 765, 1168, 1900
Bst6I	CTCTTC	1 cut(s)	1785
BstAFI	CTTAAG	2 cut(s)	1259, 2039
BstAUI	TGTACA	1 cut(s)	658
BstBAI	YACGTR	2 cut(s)	278, 1094
BstC8I	GCNNGC	8 cut(s)	93, 97, 220, 883, 1424, 1428, 1883, 2444
BstDEI	CTNAG	8 cut(s)	294, 313, 715, 1227, 1869, 1964, 2015, 2478
BstENI	CCTNNNNNAGG	1 cut(s)	714
BstF5I	GGATG	5 cut(s)	331, 458, 793, 1238, 2034
BstFNI	CGCG	1 cut(s)	612
BstHHI	GCGC	1 cut(s)	255
BstMAI	GTCTC	3 cut(s)	200, 592, 1476
BstMWI	GCNNNNNNNGC	9 cut(s)	215, 869, 878, 965, 1121, 1600, 1751, 1891, 2474
BstNI	CCWGG	3 cut(s)	443, 534, 887
BstNSI	RCATGY	3 cut(s)	176, 1430, 2446
BstSCI	CCNGG	4 cut(s)	441, 532, 885, 2358
BstSFI	CTRYAG	4 cut(s)	39, 870, 1218, 1797
BstSLI	GKGCMC	1 cut(s)	853
BstUI	CGCG	1 cut(s)	612
BstV1I	GCAGC	4 cut(s)	410, 735, 856, 977
BstV2I	GAAGAC	2 cut(s)	546, 1850
BstX2I	RGATCY	2 cut(s)	43, 1699
BstXI	CCANNNNNNTGG	2 cut(s)	1948, 2432
BstYI	RGATCY	2 cut(s)	43, 1699
BsuRI	GGCC	4 cut(s)	99, 418, 885, 1180
BtgZI	GCGATG	1 cut(s)	2
BtrI	CACGTC	2 cut(s)	290, 581
BtsCI	GGATG	5 cut(s)	331, 458, 793, 1238, 2034
BtsI	GCAGTG	1 cut(s)	1859
BtsIMutI	CAGTG	6 cut(s)	332, 746, 761, 1403, 1859, 1896
BveI	ACCTGC	1 cut(s)	1585
Cac8I	GCNNGC	8 cut(s)	93, 97, 220, 883, 1424, 1428, 1883, 2444
CfoI	GCGC	1 cut(s)	255
Cfr13I	GGNCC	2 cut(s)	164, 2420
CseI	GACGC	1 cut(s)	1031
CsiI	ACCWGGT	1 cut(s)	441
Csp6I	GTAC	6 cut(s)	468, 608, 659, 766, 1055, 2460
CspCI	CAANNNNNGTGG	2 cut(s)	771, 806
CviQI	GTAC	6 cut(s)	468, 608, 659, 766, 1055, 2460
DdeI	CTNAG	8 cut(s)	294, 313, 715, 1227, 1869, 1964, 2015, 2478
DraI	TTTAAA	1 cut(s)	136
EaeI	YGGCCR	2 cut(s)	883, 1178
Eam1104I	CTCTTC	1 cut(s)	1785
EarI	CTCTTC	1 cut(s)	1785
Ecl136II	GAGCTC	1 cut(s)	1156
Eco147I	AGGCCT	1 cut(s)	418
Eco24I	GRGCYC	2 cut(s)	93, 1158
Eco31I	GGTCTC	1 cut(s)	592
Eco47I	GGWCC	2 cut(s)	164, 2420
Eco53kI	GAGCTC	1 cut(s)	1156
Eco57I	CTGAAG	2 cut(s)	768, 837
Eco72I	CACGTG	1 cut(s)	278
EcoICRI	GAGCTC	1 cut(s)	1156
EcoNI	CCTNNNNNAGG	1 cut(s)	714
EcoRII	CCWGG	3 cut(s)	441, 532, 885
EcoT38I	GRGCYC	2 cut(s)	93, 1158
Esp3I	CGTCTC	1 cut(s)	1476
FaqI	GGGAC	6 cut(s)	407, 903, 963, 1385, 1796, 2406
FauNDI	CATATG	3 cut(s)	1105, 1678, 2231
FbaI	TGATCA	2 cut(s)	247, 931
FblI	GTMKAC	1 cut(s)	1560
Fnu4HI	GCNGC	4 cut(s)	399, 724, 870, 966
FokI	GGATG	5 cut(s)	338, 445, 800, 1225, 2021
FriOI	GRGCYC	2 cut(s)	93, 1158
Fsp4HI	GCNGC	4 cut(s)	399, 724, 870, 966
FspBI	CTAG	9 cut(s)	69, 521, 921, 1058, 1271, 1778, 1976, 2328, 2469
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	4 cut(s)	399, 724, 870, 966
GsuI	CTGGAG	1 cut(s)	1970
HaeIII	GGCC	4 cut(s)	99, 418, 885, 1180
HapII	CCGG	1 cut(s)	2360
HgaI	GACGC	1 cut(s)	1031
HhaI	GCGC	1 cut(s)	255
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HincII	GTYRAC	2 cut(s)	1164, 1655
HindII	GTYRAC	2 cut(s)	1164, 1655
HindIII	AAGCTT	1 cut(s)	861
HinfI	GANTC	8 cut(s)	506, 1379, 1384, 1444, 1514, 1619, 1954, 2315
HpaII	CCGG	1 cut(s)	2360
HphI	GGTGA	8 cut(s)	170, 190, 515, 548, 764, 771, 1981, 2423
Hpy166II	GTNNAC	6 cut(s)	851, 899, 1164, 1561, 1655, 2056
Hpy188I	TCNGA	3 cut(s)	1153, 1172, 1694
Hpy188III	TCNNGA	9 cut(s)	47, 69, 293, 486, 905, 921, 1388, 1518, 1910
Hpy8I	GTNNAC	6 cut(s)	851, 899, 1164, 1561, 1655, 2056
HpyAV	CCTTC	7 cut(s)	22, 547, 662, 743, 1363, 1666, 2203
HpyCH4III	ACNGT	4 cut(s)	336, 765, 1168, 1900
HpyCH4IV	ACGT	4 cut(s)	277, 289, 580, 1093
HpyF10VI	GCNNNNNNNGC	9 cut(s)	215, 869, 878, 965, 1121, 1600, 1751, 1891, 2474
HpyF3I	CTNAG	8 cut(s)	294, 313, 715, 1227, 1869, 1964, 2015, 2478
HpySE526I	ACGT	4 cut(s)	277, 289, 580, 1093
HspAI	GCGC	1 cut(s)	253
Ksp22I	TGATCA	2 cut(s)	247, 931
LmnI	GCTCC	6 cut(s)	309, 712, 1153, 1711, 1891, 2474
Lsp1109I	GCAGC	4 cut(s)	410, 735, 856, 977
MabI	ACCWGGT	1 cut(s)	441
MaeI	CTAG	9 cut(s)	69, 521, 921, 1058, 1271, 1778, 1976, 2328, 2469
MaeII	ACGT	4 cut(s)	277, 289, 580, 1093
MaeIII	GTNAC	2 cut(s)	616, 2368
MflI	RGATCY	2 cut(s)	43, 1699
MhlI	GDGCHC	4 cut(s)	93, 853, 1158, 1896
MlsI	TGGCCA	2 cut(s)	885, 1180
MluI	ACGCGT	1 cut(s)	610
MluNI	TGGCCA	2 cut(s)	885, 1180
MmeI	TCCRAC	1 cut(s)	1882
Mox20I	TGGCCA	2 cut(s)	885, 1180
MscI	TGGCCA	2 cut(s)	885, 1180
MseI	TTAA	6 cut(s)	135, 1260, 1770, 2040, 2196, 2262
MslI	CAYNNNNRTG	4 cut(s)	156, 973, 1006, 1824
Msp20I	TGGCCA	2 cut(s)	885, 1180
MspCI	CTTAAG	2 cut(s)	1259, 2039
MspI	CCGG	1 cut(s)	2360
MspR9I	CCNGG	4 cut(s)	443, 534, 887, 2360
Mva1269I	GAATGC	3 cut(s)	151, 1501, 1543
MvaI	CCWGG	3 cut(s)	443, 534, 887
MvnI	CGCG	1 cut(s)	612
MwoI	GCNNNNNNNGC	9 cut(s)	215, 869, 878, 965, 1121, 1600, 1751, 1891, 2474
NciI	CCSGG	1 cut(s)	2360
NdeI	CATATG	3 cut(s)	1105, 1678, 2231
NlaIV	GGNNCC	3 cut(s)	165, 1938, 2422
NmuCI	GTSAC	1 cut(s)	616
NspI	RCATGY	3 cut(s)	176, 1430, 2446
PaeI	GCATGC	2 cut(s)	1430, 2446
PceI	AGGCCT	1 cut(s)	418
PctI	GAATGC	3 cut(s)	151, 1501, 1543
PfeI	GAWTC	8 cut(s)	506, 1379, 1384, 1444, 1514, 1619, 1954, 2315
PkrI	GCNGC	4 cut(s)	400, 725, 871, 967
PmaCI	CACGTG	1 cut(s)	278
PmlI	CACGTG	1 cut(s)	278
Ppu21I	YACGTR	2 cut(s)	278, 1094
PshBI	ATTAAT	1 cut(s)	1770
Psp124BI	GAGCTC	1 cut(s)	1158
Psp6I	CCWGG	3 cut(s)	441, 532, 885
PspCI	CACGTG	1 cut(s)	278
PspGI	CCWGG	3 cut(s)	441, 532, 885
PspN4I	GGNNCC	3 cut(s)	165, 1938, 2422
PspPI	GGNCC	2 cut(s)	164, 2420
PstI	CTGCAG	1 cut(s)	874
PsuI	RGATCY	2 cut(s)	43, 1699
RsaI	GTAC	6 cut(s)	469, 609, 660, 767, 1056, 2461
RsaNI	GTAC	6 cut(s)	468, 608, 659, 766, 1055, 2460
RseI	CAYNNNNRTG	4 cut(s)	156, 973, 1006, 1824
SacI	GAGCTC	1 cut(s)	1158
SaqAI	TTAA	6 cut(s)	135, 1260, 1770, 2040, 2196, 2262
SatI	GCNGC	4 cut(s)	399, 724, 870, 966
Sau96I	GGNCC	2 cut(s)	164, 2420
ScaI	AGTACT	1 cut(s)	1056
ScrFI	CCNGG	4 cut(s)	443, 534, 887, 2360
SduI	GDGCHC	4 cut(s)	93, 853, 1158, 1896
SexAI	ACCWGGT	1 cut(s)	441
SfcI	CTRYAG	4 cut(s)	39, 870, 1218, 1797
SinI	GGWCC	2 cut(s)	164, 2420
SmiMI	CAYNNNNRTG	4 cut(s)	156, 973, 1006, 1824
SmlI	CTYRAG	6 cut(s)	1259, 1473, 1667, 2039, 2101, 2154
SmoI	CTYRAG	6 cut(s)	1259, 1473, 1667, 2039, 2101, 2154
SpeI	ACTAGT	2 cut(s)	1057, 2327
SphI	GCATGC	2 cut(s)	1430, 2446
SseBI	AGGCCT	1 cut(s)	418
SsiI	CCGC	1 cut(s)	176
SspMI	CTAG	9 cut(s)	69, 521, 921, 1058, 1271, 1778, 1976, 2328, 2469
SstI	GAGCTC	1 cut(s)	1158
StuI	AGGCCT	1 cut(s)	418
StyD4I	CCNGG	4 cut(s)	441, 532, 885, 2358
TaaI	ACNGT	4 cut(s)	336, 765, 1168, 1900
TaiI	ACGT	4 cut(s)	280, 292, 583, 1096
TaqI	TCGA	4 cut(s)	1359, 1382, 2207, 2238
TatI	WGTACW	4 cut(s)	658, 765, 1054, 2459
TfiI	GAWTC	8 cut(s)	506, 1379, 1384, 1444, 1514, 1619, 1954, 2315
Tru1I	TTAA	6 cut(s)	135, 1260, 1770, 2040, 2196, 2262
Tru9I	TTAA	6 cut(s)	135, 1260, 1770, 2040, 2196, 2262
TscAI	CASTG	6 cut(s)	339, 746, 768, 1410, 1859, 1903
TseFI	GTSAC	1 cut(s)	616
TseI	GCWGC	4 cut(s)	398, 723, 869, 965
Tsp45I	GTSAC	1 cut(s)	616
TspGWI	ACGGA	2 cut(s)	1458, 2232
TspRI	CASTG	6 cut(s)	339, 746, 768, 1410, 1859, 1903
Vha464I	CTTAAG	2 cut(s)	1259, 2039
VneI	GTGCAC	1 cut(s)	849
VpaK11BI	GGWCC	2 cut(s)	164, 2420
VspI	ATTAAT	1 cut(s)	1770
XagI	CCTNNNNNAGG	1 cut(s)	714
XapI	RAATTY	4 cut(s)	557, 1683, 1802, 2094
XbaI	TCTAGA	2 cut(s)	68, 920
XceI	RCATGY	3 cut(s)	176, 1430, 2446
XmiI	GTMKAC	1 cut(s)	1560
XspI	CTAG	9 cut(s)	69, 521, 921, 1058, 1271, 1778, 1976, 2328, 2469
ZrmI	AGTACT	1 cut(s)	1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.