Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005429

Physical Location & Seq

Genomic Coordinates Reverse (-)

60526334 .. 60539774

Gene Structure 13441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035082

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2871 bp

ATGGCTCCGATTCCGCCAGACAACGGCGTAGAAGGAGACGATGAGCGAGATGAGGAGGAGGAAGAAGAAGAGGAGGAGGAGGAAGTGGAGGAAGAGGAGGAGGAAGAGGAGGAGGAGCCGAGGCTCAAGTACCAGAGAATGGGAGGCAGCATTCCTACGCTTCTAGCGAACGACGTCGCTTCGTGTATCGCCGTGGCGGAGCGGATGATCGCGCTCGGGACGCACGGCGGGACAATTCATATTCTCGATTTTCTCGGCAATCAGGTCAAGGAATTTTCTGCTCATACTGCTGCTGTGAACGATCTTAGCTTTGACATAGAAGGTGAATATATAGGAAGCTGTTCAGATGATGGGTCTGTCATAATAAACAGCCTTTTCACAGATGAGAAAATGAAGTTTGAGTATCATCGTCCTATGAAGGCTATTGCTGTGGATCCAGATTATGCAAAAAAATCATCTAGAAGATTTGTAGCTGGTGGGCTCGCAGGCCATTTATACTTTAATGCGAAAAGATGGCTTGGCTTTAAAGATCAGGTTTTGCATTCTGGTGAGGGTCCAATACATGCGGTGAAGTGGAGATCAAGTCTCATTGCTTGGGCTAATGATGCAGGCGTGAAAGTATATGATACCGCAAATGATCAGCGCATAACATTCATAGAAAGACCACGTGGAAGCCCACGTCCTGAGCTTTTGCTCCCACACTTAGTTTGGCAGGATGACACACTGCTGGTCATTGCTTGGGGAACATCAATCAAAATCACATCAATAAAAACAAATCAGTCTAAAGCAGCCAACGGCTCATATAGGCCTGTCCCAGTTTCCAGTATGAACCAGGTGGATATTGTGGCATCCTTTAGTACCAGCTATTTCATATCGGGAATTGCCCCTTTTGGTGATTCTTTGGTCGTTCTAGCTTATATCCCTGGTGAAGACGATGGGGAGAAGGAATTTAGTAGCTCTGTTCCATCACGTCAGGGAAATGCGCAGAGACCAGAAGTACGCGTTGTGACATGGAATAATGATGAACTTTCAACAGATGCCCTTCCTGTACATGGCTTTGAGCATTACAAGGCAAAGGACTATTCACTTGCTCATGCTCCTTTCTCAGGTAGCAGCTATGCTGGTGGTCAGTGGGCTGAAGGTGATGAACCACTGTACTATATTGTATCACCAAAGGATGTGGTCATAGCAAAACCCAGAGATGCTGAAGATCATATTGCTTGGCTTCTTCAACATGGTGCACACGAAAAAGCTTTGGCTGCAGTTGAAGCTGGCCAGGGACGAAGTGAACTTATTGACGAGGTTGGTTCTAGATACCTTGATCATTTGATTGTGGAAAGAAAATATGCCGAAGCGGCATCTTTGTGTCCCAAATTGTTGCGAGGATCGGCATCTGCATGGGAAAGATGGGTTTTCCACTTTGCTCATCTGCGTCAGCTTCCAGTACTAGTGCCATATATACCAACAGAAAACCCAAGATTACGTGATACTGCGTATGAGGTTGCTCTTGTAGCTATTGCTACAAACCCATCTTTTCATATGGAGCTCTTGTCAACTGTCAGATCATGGCCACCTGTGATTTATTCTGCATTGCCTGTAATCTCGGCTATAGAACCTCAGCTCAATACATCCTCCATGACAGATGCTCTTAAGGAGGCACTAGCAGAGTTGTATGTCATTGATGGGCAATATGAGAAAGCCTTTTCACTATATGCTGATCTTATGAACCCAAATGTATTCGTCTTCATCGAAAAACACAATCTATATGATTCGATTCGGGAAAAGGTCGTCCCACTGATGATGCTGGATTGCAAGCATGCTGTTCCTTTATTGATTCAAAATAAGGACTTGATTACTCCGTCTCAAGTTGTCAAACAACTTTTGAATGCGAGTGATAAGTGCGATTCCAGAAATTACTTGCATCTATATTTGCATTCACTATTTGAAGTAGACCCTCATGCTGGAAAAAATTTCCATGATATGCAGGTAGAGCTTTATGCAGACTATGATTCAAAGATGCTGCTTCCTTTTCTTCGTAGTAGTCAACATTATACACTTGAGAAGGCATATGAAATTTGCATCAGAAAGGATCTTGTAAAGGAGCAAGTTTTCATTCTTGGAAGAATGGGAAATGCAAAACAAGCCCTTGCTATAATCATTAATAAACTAGGGGACATTGAAGAGGCTGTAGAATTTGTGAGTATGCAACATGATGATGAACTATGGGAGGAATTGATCCAGCAGTGTCTTCATAAACCTGAGATGGTCGGCGTGCTATTGGAGCACACTGTTGGAAATCTTGATCCTCTTTATATTGTGAATATGGTTCCCAATGGACTGGAGATTCCTCTGCTCAGGGATAGGCTAGTCAAAATTATCACCAATTACAGGACTGAAACATCTCTAAGACATGGGTGCAATGACATCCTTAAGGCTGATATTGTGAACCTCTTGGTCAAATACTACAATGAGGCAAGACATGGAATTTACTTGAGCAATGAAGAAGATGAGGCACGAGCAAAAAGGAATGATGCTAGGACTTCTCAAGTGGTTGAGAAATCACCTGGTGTGAGAAGTATGGAGGTTAAATCAAAATCGAAGGGTGGTGCAAGGTGTTGCATATGTTTCGATCCGTTTTCTATACAGAGTGTTAATGTCATTGTTTTCTTTTGTTGTCATGCTTATCACATGACTTGTCTTATGGATTCCACCTACACTAGTGGAATGAATGAGAGTGGGATCACTTCCCGGGAGAGAGTAACAGATTATGGGTATGATGATAGTGATGTGGATGATGATGGTGATGGTGGTCCCCAATCGGGTGGCTCTCGCATGCGTTGTATCTTATGTACTACTGCTAGTGGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019899 GO:0030897 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033263 GO:0033365 GO:0034613 GO:0035542 GO:0042144 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048284 GO:0050789 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0097576 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Clathrin

Protein Analysis

957

Amino Acids

107.0

Weight (kDa)

5.0

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Vps41	PF23411	42 - 398	4.5e-99	Vps42 beta-propeller
Beta-prop_WDR3_1st	PF25173	62 - 131	3.1e-06	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	62 - 132	4.3e-06	WDHD1 first WD40 domain
TPR_Vps41	PF23556	434 - 774	1.2e-147	Vps41 TPR-like region
Clathrin	PF00637	633 - 752	1.9e-09	Region in Clathrin and VPS
zf-RING_Vps41	PF23555	871 - 916	7.6e-14	Vps41 C-terminal RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08190
fragaria_vesca	FvH4_3g30370 FvH4_3g30370 FvH4_3g30370 FvH4_3g30370 FvH4_3g30370
malus_domestica	MD03G1129800.v1.1 MD11G1151700.v1.1
prunus_persica	Prupe.6G114800_v2.0.a1 Prupe.6G114800_v2.0.a1
pyrus_communis	pycom11g12380 pycom11g12390
rosa_chinensis	RchiOBHm_Chr5g0056311
rosa_laevigata	RLG00000035067 RLG00000035070 RLG00000035077 RLG00000035080 RLG00000035082
rosa_multiflora	Rmu_sc0000680.1_g000003
rosa_roxburghii	Rroxscaffold_1G00024010
rosa_rugosa	Rorug05G0298600 Rorug05G0298700 Rorug05G0298800
rosa_samantha	Rh5AG369600 Rh5BG380500 Rh5CG404000 Rh5DG393600
rosa_wichuraiana	Rw0G004390 Rw0G012630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	177
Acc16I	TGCGCA	1 cut(s)	984
Acc36I	ACCTGC	1 cut(s)	1975
AccB7I	CCANNNNNTGG	1 cut(s)	139
AccBSI	CCGCTC	1 cut(s)	202
AccI	GTMKAC	1 cut(s)	1950
AccII	CGCG	2 cut(s)	212, 1002
AciI	CCGC	7 cut(s)	14, 197, 202, 228, 566, 630, 1355
AclWI	GGATC	8 cut(s)	428, 441, 1393, 2097, 2230, 2297, 2624, 2747
AcoI	YGGCCR	2 cut(s)	1273, 1568
AcsI	RAATTY	6 cut(s)	272, 947, 1969, 2073, 2192, 2484
AcuI	CTGAAG	2 cut(s)	1158, 1227
AcvI	CACGTG	1 cut(s)	668
AcyI	GRCGYC	1 cut(s)	174
AdeI	CACNNNGTG	1 cut(s)	2567
AfaI	GTAC	7 cut(s)	131, 859, 999, 1050, 1157, 1446, 2851
AfiI	CCNNNNNNNGG	7 cut(s)	23, 139, 1052, 1106, 1961, 2388, 2819
AflII	CTTAAG	2 cut(s)	1649, 2429
AflIII	ACRYGT	1 cut(s)	1000
AgsI	TTSAA	8 cut(s)	1032, 1232, 1268, 1838, 1885, 1946, 2013, 2180
AhlI	ACTAGT	2 cut(s)	1447, 2717
AjiI	CACGTC	2 cut(s)	680, 971
AjnI	CCWGG	4 cut(s)	831, 922, 1275, 2563
Alw21I	GWGCWC	3 cut(s)	1243, 1548, 2286
Alw26I	GTCTC	4 cut(s)	30, 590, 982, 1866
Alw44I	GTGCAC	1 cut(s)	1239
AlwI	GGATC	8 cut(s)	428, 441, 1393, 2097, 2230, 2297, 2624, 2747
Ama87I	CYCGRG	2 cut(s)	215, 2748
AoxI	GGCC	4 cut(s)	487, 806, 1273, 1568
ApaLI	GTGCAC	1 cut(s)	1239
ApeKI	GCWGC	6 cut(s)	147, 290, 788, 1113, 1259, 2020
ApoI	RAATTY	6 cut(s)	272, 947, 1969, 2073, 2192, 2484
AseI	ATTAAT	1 cut(s)	2160
Asp700I	GAANNNNTTC	1 cut(s)	340
AspLEI	GCGC	3 cut(s)	214, 645, 985
AspS9I	GGNCC	2 cut(s)	554, 2810
AsuC2I	CCSGG	2 cut(s)	2749, 2750
AvaI	CYCGRG	2 cut(s)	215, 2748
AvaII	GGWCC	2 cut(s)	554, 2810
BaeGI	GKGCMC	1 cut(s)	1243
BalI	TGGCCA	2 cut(s)	1275, 1570
BamHI	GGATCC	1 cut(s)	433
BanII	GRGCYC	2 cut(s)	483, 1548
BauI	CACGAG	1 cut(s)	2514
BbrPI	CACGTG	1 cut(s)	668
BbsI	GAAGAC	3 cut(s)	936, 1735, 2240
Bbv12I	GWGCWC	3 cut(s)	1243, 1548, 2286
BbvCI	CCTCAGC	1 cut(s)	1617
BbvI	GCAGC	6 cut(s)	159, 277, 800, 1125, 1246, 2007
BceAI	ACGGC	4 cut(s)	40, 176, 241, 811
BcgI	CGANNNNNNTGC	2 cut(s)	2608, 2642
BciT130I	CCWGG	4 cut(s)	833, 924, 1277, 2565
BclI	TGATCA	2 cut(s)	637, 1321
BcnI	CCSGG	2 cut(s)	2749, 2750
BcoDI	GTCTC	4 cut(s)	30, 590, 982, 1866
BcuI	ACTAGT	2 cut(s)	1447, 2717
BfmI	CTRYAG	3 cut(s)	1260, 1608, 2187
BfrI	CTTAAG	2 cut(s)	1649, 2429
BfuAI	ACCTGC	1 cut(s)	1975
BglI	GCCNNNNNGGC	1 cut(s)	1355
BisI	GCNGC	7 cut(s)	148, 291, 789, 1114, 1260, 1356, 2021
BlsI	GCNGC	7 cut(s)	149, 292, 790, 1115, 1261, 1357, 2022
BmcAI	AGTACT	1 cut(s)	1446
Bme1390I	CCNGG	6 cut(s)	833, 924, 1277, 2565, 2749, 2750
Bme18I	GGWCC	2 cut(s)	554, 2810
BmeT110I	CYCGRG	2 cut(s)	215, 2748
BmgBI	CACGTC	2 cut(s)	680, 971
BmgT120I	GGNCC	2 cut(s)	554, 2810
BmiI	GGNNCC	6 cut(s)	6, 117, 435, 555, 2328, 2812
BmrFI	CCNGG	6 cut(s)	833, 924, 1277, 2565, 2749, 2750
BmrI	ACTGGG	1 cut(s)	809
BmuI	ACTGGG	1 cut(s)	809
BpiI	GAAGAC	3 cut(s)	936, 1735, 2240
BpmI	CTGGAG	1 cut(s)	2360
Bpu10I	CCTNAGC	3 cut(s)	684, 1617, 2354
BpuEI	CTTGAG	5 cut(s)	110, 1848, 2078, 2512, 2529
BpuMI	CCSGG	2 cut(s)	2749, 2750
BsaAI	YACGTR	2 cut(s)	668, 1484
BsaBI	GATNNNNATC	1 cut(s)	1390
BsaHI	GRCGYC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	982
BsaJI	CCNNGG	5 cut(s)	119, 192, 922, 1276, 2748
BsaXI	ACNNNNNCTCC	4 cut(s)	568, 598, 1535, 1565
Bsc4I	CCNNNNNNNGG	7 cut(s)	23, 139, 1052, 1106, 1961, 2388, 2819
Bse1I	ACTGG	4 cut(s)	815, 822, 1442, 2343
Bse3DI	GCAATG	5 cut(s)	588, 732, 1589, 2425, 2503
Bse8I	GATNNNNATC	1 cut(s)	1390
BseBI	CCWGG	4 cut(s)	833, 924, 1277, 2565
BseDI	CCNNGG	5 cut(s)	119, 192, 922, 1276, 2748
BseGI	GGATG	7 cut(s)	210, 721, 848, 1183, 1628, 2424, 2797
BseJI	GATNNNNATC	1 cut(s)	1390
BseLI	CCNNNNNNNGG	7 cut(s)	23, 139, 1052, 1106, 1961, 2388, 2819
BseMI	GCAATG	5 cut(s)	588, 732, 1589, 2425, 2503
BseMII	CTCAG	5 cut(s)	675, 1119, 1631, 2250, 2368
BseNI	ACTGG	4 cut(s)	815, 822, 1442, 2343
BseSI	GKGCMC	1 cut(s)	1243
BseXI	GCAGC	6 cut(s)	159, 277, 800, 1125, 1246, 2007
Bsh1236I	CGCG	2 cut(s)	212, 1002
BshFI	GGCC	4 cut(s)	489, 808, 1275, 1570
BsiHKAI	GWGCWC	3 cut(s)	1243, 1548, 2286
BsiHKCI	CYCGRG	2 cut(s)	215, 2748
BsiSI	CCGG	1 cut(s)	2749
BslFI	GGGAC	8 cut(s)	232, 244, 797, 1293, 1353, 1775, 2186, 2796
BslI	CCNNNNNNNGG	7 cut(s)	23, 139, 1052, 1106, 1961, 2388, 2819
BsmAI	GTCTC	4 cut(s)	30, 590, 982, 1866
BsmBI	CGTCTC	2 cut(s)	30, 1866
BsmFI	GGGAC	8 cut(s)	232, 244, 797, 1293, 1353, 1775, 2186, 2796
BsmI	GAATGC	4 cut(s)	150, 541, 1891, 1933
BsnI	GGCC	4 cut(s)	489, 808, 1275, 1570
Bso31I	GGTCTC	1 cut(s)	982
BsoBI	CYCGRG	2 cut(s)	215, 2748
Bsp1286I	GDGCHC	4 cut(s)	483, 1243, 1548, 2286
Bsp1407I	TGTACA	1 cut(s)	1048
BspACI	CCGC	7 cut(s)	14, 197, 202, 228, 566, 630, 1355
BspANI	GGCC	4 cut(s)	489, 808, 1275, 1570
BspCNI	CTCAG	5 cut(s)	676, 1118, 1630, 2251, 2367
BspFNI	CGCG	2 cut(s)	212, 1002
BspLI	GGNNCC	6 cut(s)	6, 117, 435, 555, 2328, 2812
BspMAI	CTGCAG	1 cut(s)	1264
BspMI	ACCTGC	1 cut(s)	1975
BspPI	GGATC	8 cut(s)	428, 441, 1393, 2097, 2230, 2297, 2624, 2747
BspTI	CTTAAG	2 cut(s)	1649, 2429
BspTNI	GGTCTC	1 cut(s)	982
BsrBI	CCGCTC	1 cut(s)	202
BsrDI	GCAATG	5 cut(s)	588, 732, 1589, 2425, 2503
BsrGI	TGTACA	1 cut(s)	1048
BsrI	ACTGG	4 cut(s)	815, 822, 1442, 2343
BssECI	CCNNGG	5 cut(s)	119, 192, 922, 1276, 2748
BssNI	GRCGYC	1 cut(s)	174
BssSI	CACGAG	1 cut(s)	2514
Bst2BI	CACGAG	1 cut(s)	2514
Bst2UI	CCWGG	4 cut(s)	833, 924, 1277, 2565
Bst4CI	ACNGT	3 cut(s)	1155, 1558, 2290
Bst6I	CTCTTC	4 cut(s)	63, 87, 99, 2175
BstACI	GRCGYC	1 cut(s)	174
BstAFI	CTTAAG	2 cut(s)	1649, 2429
BstAUI	TGTACA	1 cut(s)	1048
BstBAI	YACGTR	2 cut(s)	668, 1484
BstC8I	GCNNGC	8 cut(s)	483, 487, 610, 1273, 1814, 1818, 2273, 2834
BstDEI	CTNAG	9 cut(s)	305, 684, 703, 1105, 1617, 2259, 2354, 2405, 2868
BstDSI	CCRYGG	1 cut(s)	192
BstENI	CCTNNNNNAGG	1 cut(s)	1104
BstF5I	GGATG	7 cut(s)	210, 721, 848, 1183, 1628, 2424, 2797
BstFNI	CGCG	2 cut(s)	212, 1002
BstHHI	GCGC	3 cut(s)	214, 645, 985
BstMAI	GTCTC	4 cut(s)	30, 590, 982, 1866
BstNI	CCWGG	4 cut(s)	833, 924, 1277, 2565
BstNSI	RCATGY	3 cut(s)	566, 1820, 2836
BstSCI	CCNGG	6 cut(s)	831, 922, 1275, 2563, 2747, 2748
BstSFI	CTRYAG	3 cut(s)	1260, 1608, 2187
BstSLI	GKGCMC	1 cut(s)	1243
BstUI	CGCG	2 cut(s)	212, 1002
BstV1I	GCAGC	6 cut(s)	159, 277, 800, 1125, 1246, 2007
BstV2I	GAAGAC	3 cut(s)	936, 1735, 2240
BstX2I	RGATCY	2 cut(s)	433, 2089
BstXI	CCANNNNNNTGG	2 cut(s)	2338, 2822
BstYI	RGATCY	2 cut(s)	433, 2089
BsuRI	GGCC	4 cut(s)	489, 808, 1275, 1570
BtgI	CCRYGG	1 cut(s)	192
BtrI	CACGTC	2 cut(s)	680, 971
BtsCI	GGATG	7 cut(s)	210, 721, 848, 1183, 1628, 2424, 2797
BtsI	GCAGTG	2 cut(s)	722, 2249
BtsIMutI	CAGTG	6 cut(s)	722, 1136, 1151, 1793, 2249, 2286
BveI	ACCTGC	1 cut(s)	1975
Cac8I	GCNNGC	8 cut(s)	483, 487, 610, 1273, 1814, 1818, 2273, 2834
CfoI	GCGC	3 cut(s)	214, 645, 985
Cfr13I	GGNCC	2 cut(s)	554, 2810
Cfr9I	CCCGGG	1 cut(s)	2748
CseI	GACGC	2 cut(s)	229, 1421
CsiI	ACCWGGT	2 cut(s)	831, 2563
Csp6I	GTAC	7 cut(s)	130, 858, 998, 1049, 1156, 1445, 2850
CspCI	CAANNNNNGTGG	2 cut(s)	1161, 1196
CviQI	GTAC	7 cut(s)	130, 858, 998, 1049, 1156, 1445, 2850
DdeI	CTNAG	9 cut(s)	305, 684, 703, 1105, 1617, 2259, 2354, 2405, 2868
DraI	TTTAAA	1 cut(s)	526
DraIII	CACNNNGTG	1 cut(s)	2567
EaeI	YGGCCR	2 cut(s)	1273, 1568
Eam1104I	CTCTTC	4 cut(s)	63, 87, 99, 2175
EarI	CTCTTC	4 cut(s)	63, 87, 99, 2175
EciI	GGCGGA	1 cut(s)	212
Ecl136II	GAGCTC	1 cut(s)	1546
Eco147I	AGGCCT	1 cut(s)	808
Eco24I	GRGCYC	2 cut(s)	483, 1548
Eco31I	GGTCTC	1 cut(s)	982
Eco47I	GGWCC	2 cut(s)	554, 2810
Eco53kI	GAGCTC	1 cut(s)	1546
Eco57I	CTGAAG	2 cut(s)	1158, 1227
Eco72I	CACGTG	1 cut(s)	668
Eco88I	CYCGRG	2 cut(s)	215, 2748
EcoICRI	GAGCTC	1 cut(s)	1546
EcoNI	CCTNNNNNAGG	1 cut(s)	1104
EcoRII	CCWGG	4 cut(s)	831, 922, 1275, 2563
EcoT38I	GRGCYC	2 cut(s)	483, 1548
Esp3I	CGTCTC	2 cut(s)	30, 1866
FaqI	GGGAC	8 cut(s)	232, 244, 797, 1293, 1353, 1775, 2186, 2796
FauI	CCCGC	1 cut(s)	221
FauNDI	CATATG	3 cut(s)	1539, 2068, 2621
FbaI	TGATCA	2 cut(s)	637, 1321
FblI	GTMKAC	1 cut(s)	1950
Fnu4HI	GCNGC	7 cut(s)	148, 291, 789, 1114, 1260, 1356, 2021
FokI	GGATG	7 cut(s)	217, 728, 835, 1190, 1615, 2411, 2804
FriOI	GRGCYC	2 cut(s)	483, 1548
Fsp4HI	GCNGC	7 cut(s)	148, 291, 789, 1114, 1260, 1356, 2021
FspI	TGCGCA	1 cut(s)	984
GlaI	GCGC	3 cut(s)	213, 644, 984
GluI	GCNGC	7 cut(s)	148, 291, 789, 1114, 1260, 1356, 2021
GsuI	CTGGAG	1 cut(s)	2360
HaeIII	GGCC	4 cut(s)	489, 808, 1275, 1570
HapII	CCGG	1 cut(s)	2749
HgaI	GACGC	2 cut(s)	229, 1421
HhaI	GCGC	3 cut(s)	214, 645, 985
Hin1I	GRCGYC	1 cut(s)	174
Hin6I	GCGC	3 cut(s)	212, 643, 983
HinP1I	GCGC	3 cut(s)	212, 643, 983
HincII	GTYRAC	2 cut(s)	1554, 2045
HindII	GTYRAC	2 cut(s)	1554, 2045
HindIII	AAGCTT	1 cut(s)	1251
HinfI	GANTC	9 cut(s)	10, 896, 1769, 1774, 1834, 1904, 2009, 2344, 2705
HpaII	CCGG	1 cut(s)	2749
Hpy166II	GTNNAC	7 cut(s)	298, 1241, 1289, 1554, 1951, 2045, 2446
Hpy188I	TCNGA	4 cut(s)	9, 346, 1562, 2084
Hpy8I	GTNNAC	7 cut(s)	298, 1241, 1289, 1554, 1951, 2045, 2446
Hpy99I	CGWCG	2 cut(s)	176, 179
HpyAV	CCTTC	8 cut(s)	26, 314, 412, 937, 1052, 1133, 2056, 2593
HpyCH4III	ACNGT	3 cut(s)	1155, 1558, 2290
HpyCH4IV	ACGT	5 cut(s)	174, 667, 679, 970, 1483
HpyF3I	CTNAG	9 cut(s)	305, 684, 703, 1105, 1617, 2259, 2354, 2405, 2868
HpySE526I	ACGT	5 cut(s)	174, 667, 679, 970, 1483
Hsp92I	GRCGYC	1 cut(s)	174
HspAI	GCGC	3 cut(s)	212, 643, 983
Ksp22I	TGATCA	2 cut(s)	637, 1321
LmnI	GCTCC	9 cut(s)	10, 115, 199, 699, 1102, 1543, 2101, 2281, 2864
Lsp1109I	GCAGC	6 cut(s)	159, 277, 800, 1125, 1246, 2007
MabI	ACCWGGT	2 cut(s)	831, 2563
MaeII	ACGT	5 cut(s)	174, 667, 679, 970, 1483
MaeIII	GTNAC	2 cut(s)	1006, 2758
MbiI	CCGCTC	1 cut(s)	202
MflI	RGATCY	2 cut(s)	433, 2089
MhlI	GDGCHC	4 cut(s)	483, 1243, 1548, 2286
MlsI	TGGCCA	2 cut(s)	1275, 1570
MluI	ACGCGT	1 cut(s)	1000
MluNI	TGGCCA	2 cut(s)	1275, 1570
MmeI	TCCRAC	1 cut(s)	2272
Mox20I	TGGCCA	2 cut(s)	1275, 1570
MroXI	GAANNNNTTC	1 cut(s)	340
MscI	TGGCCA	2 cut(s)	1275, 1570
MseI	TTAA	7 cut(s)	501, 525, 1650, 2160, 2430, 2586, 2652
MslI	CAYNNNNRTG	4 cut(s)	546, 1363, 1396, 2214
Msp20I	TGGCCA	2 cut(s)	1275, 1570
MspCI	CTTAAG	2 cut(s)	1649, 2429
MspI	CCGG	1 cut(s)	2749
MspR9I	CCNGG	6 cut(s)	833, 924, 1277, 2565, 2749, 2750
Mva1269I	GAATGC	4 cut(s)	150, 541, 1891, 1933
MvaI	CCWGG	4 cut(s)	833, 924, 1277, 2565
MvnI	CGCG	2 cut(s)	212, 1002
NciI	CCSGG	2 cut(s)	2749, 2750
NdeI	CATATG	3 cut(s)	1539, 2068, 2621
NlaIV	GGNNCC	6 cut(s)	6, 117, 435, 555, 2328, 2812
NmeAIII	GCCGAG	3 cut(s)	144, 234, 1583
NmuCI	GTSAC	1 cut(s)	1006
NsbI	TGCGCA	1 cut(s)	984
NspI	RCATGY	3 cut(s)	566, 1820, 2836
PaeI	GCATGC	2 cut(s)	1820, 2836
PceI	AGGCCT	1 cut(s)	808
PcsI	WCGNNNNNNNCGW	2 cut(s)	164, 1746
PctI	GAATGC	4 cut(s)	150, 541, 1891, 1933
PdmI	GAANNNNTTC	1 cut(s)	340
PfeI	GAWTC	9 cut(s)	10, 896, 1769, 1774, 1834, 1904, 2009, 2344, 2705
PflMI	CCANNNNNTGG	1 cut(s)	139
PkrI	GCNGC	7 cut(s)	149, 292, 790, 1115, 1261, 1357, 2022
PmaCI	CACGTG	1 cut(s)	668
PmlI	CACGTG	1 cut(s)	668
Ppu21I	YACGTR	2 cut(s)	668, 1484
PshBI	ATTAAT	1 cut(s)	2160
Psp124BI	GAGCTC	1 cut(s)	1548
Psp6I	CCWGG	4 cut(s)	831, 922, 1275, 2563
PspCI	CACGTG	1 cut(s)	668
PspGI	CCWGG	4 cut(s)	831, 922, 1275, 2563
PspN4I	GGNNCC	6 cut(s)	6, 117, 435, 555, 2328, 2812
PspPI	GGNCC	2 cut(s)	554, 2810
PstI	CTGCAG	1 cut(s)	1264
PsuI	RGATCY	2 cut(s)	433, 2089
RsaI	GTAC	7 cut(s)	131, 859, 999, 1050, 1157, 1446, 2851
RsaNI	GTAC	7 cut(s)	130, 858, 998, 1049, 1156, 1445, 2850
RseI	CAYNNNNRTG	4 cut(s)	546, 1363, 1396, 2214
SacI	GAGCTC	1 cut(s)	1548
SaqAI	TTAA	7 cut(s)	501, 525, 1650, 2160, 2430, 2586, 2652
SatI	GCNGC	7 cut(s)	148, 291, 789, 1114, 1260, 1356, 2021
Sau96I	GGNCC	2 cut(s)	554, 2810
ScaI	AGTACT	1 cut(s)	1446
ScrFI	CCNGG	6 cut(s)	833, 924, 1277, 2565, 2749, 2750
SduI	GDGCHC	4 cut(s)	483, 1243, 1548, 2286
SexAI	ACCWGGT	2 cut(s)	831, 2563
SfcI	CTRYAG	3 cut(s)	1260, 1608, 2187
SinI	GGWCC	2 cut(s)	554, 2810
SmaI	CCCGGG	1 cut(s)	2750
SmiMI	CAYNNNNRTG	4 cut(s)	546, 1363, 1396, 2214
SmlI	CTYRAG	7 cut(s)	125, 1649, 1863, 2057, 2429, 2491, 2544
SmoI	CTYRAG	7 cut(s)	125, 1649, 1863, 2057, 2429, 2491, 2544
SpeI	ACTAGT	2 cut(s)	1447, 2717
SphI	GCATGC	2 cut(s)	1820, 2836
SseBI	AGGCCT	1 cut(s)	808
SsiI	CCGC	7 cut(s)	14, 197, 202, 228, 566, 630, 1355
SstI	GAGCTC	1 cut(s)	1548
StuI	AGGCCT	1 cut(s)	808
StyD4I	CCNGG	6 cut(s)	831, 922, 1275, 2563, 2747, 2748
TaaI	ACNGT	3 cut(s)	1155, 1558, 2290
TaiI	ACGT	5 cut(s)	177, 670, 682, 973, 1486
TaqI	TCGA	5 cut(s)	246, 1749, 1772, 2597, 2628
TatI	WGTACW	4 cut(s)	1048, 1155, 1444, 2849
TauI	GCSGC	1 cut(s)	1358
TfiI	GAWTC	9 cut(s)	10, 896, 1769, 1774, 1834, 1904, 2009, 2344, 2705
Tru1I	TTAA	7 cut(s)	501, 525, 1650, 2160, 2430, 2586, 2652
Tru9I	TTAA	7 cut(s)	501, 525, 1650, 2160, 2430, 2586, 2652
TscAI	CASTG	6 cut(s)	729, 1136, 1158, 1800, 2249, 2293
TseFI	GTSAC	1 cut(s)	1006
TseI	GCWGC	6 cut(s)	147, 290, 788, 1113, 1259, 2020
Tsp45I	GTSAC	1 cut(s)	1006
TspGWI	ACGGA	2 cut(s)	1848, 2622
TspMI	CCCGGG	1 cut(s)	2748
TspRI	CASTG	6 cut(s)	729, 1136, 1158, 1800, 2249, 2293
Van91I	CCANNNNNTGG	1 cut(s)	139
Vha464I	CTTAAG	2 cut(s)	1649, 2429
VneI	GTGCAC	1 cut(s)	1239
VpaK11BI	GGWCC	2 cut(s)	554, 2810
VspI	ATTAAT	1 cut(s)	2160
XagI	CCTNNNNNAGG	1 cut(s)	1104
XapI	RAATTY	6 cut(s)	272, 947, 1969, 2073, 2192, 2484
XbaI	TCTAGA	2 cut(s)	458, 1310
XceI	RCATGY	3 cut(s)	566, 1820, 2836
XcmI	CCANNNNNNNNNTGG	1 cut(s)	705
XmaI	CCCGGG	1 cut(s)	2748
XmiI	GTMKAC	1 cut(s)	1950
XmnI	GAANNNNTTC	1 cut(s)	340
ZraI	GACGTC	1 cut(s)	175
ZrmI	AGTACT	1 cut(s)	1446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.