Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005429

Physical Location & Seq

Genomic Coordinates Reverse (-)

59914402 .. 59929279

Gene Structure 14878 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33321

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2874 bp

ATGGCTCCGATTCCGCCAGACAACGGCGTAGAAGGAGACGATGAGCGAGATGAGGAGGAAGAAGAAGAGGAGGAGGAGGAGGAGGAAGTGGAAGAGGAAGAGGAGGAAGAGGAGGAGGAGCCGAGGCTCAAGTACCAGAGAATGGGAGGCAGCATTCCTACGCTTCTAGCGAACGACGTCGCTTCGTGTATCGCCGTGGCGGAGCGGATGATCGCGCTCGGGACGCACGGCGGGACAATTCATATTCTCGATTTTCTCGGCAATCAGGTCAAGGAATTTTCTGCTCATACTGCTGCTGTGAATGATCTTAGCTTTGACATAGAAGGTGAATATATAGGAAGCTGTTCAGATGATGGGTCTGTCGTAATAAACAGCCTTTTCACAGATGAGAAAATGAAGTTTGAGTATCATCGCCCTATGAAGGCTATTGCTGTAGATCCAGATTATGCAAAAAAATCATCTAGAAGATTTGTAGCTGGTGGGCTCGCAGGCCACTTATACTTCAATGCGAAAAGATGGCTTGGCTTTAAAGATCAGGTTTTGCATTCTGGTGAGGGTCCAATACATGCGGTGAAGTGGAGATCAAGTCTCATTGCTTGGGCTAATGATGCAGGCGTGAAAGTATATGATACAGCAAATGATCAGCGCATAACATTCATAGAAAGACCACGTGGAAGCCCACGTCCTGAGCTTTTGCTCCCTCACTTAGTTTGGCAGGATGACACACTGTTGGTCATTGCTTGGGGAACATCAATCAAAATCACATCAATAAAAACAAATCAGTCTAAAGCAGCCAATGGCTCATATAGGCCTGTCCCAGTTTCCAGTATGAACCAGGTGGATATTGTGGCATCCTTTAGTACCAGCTATTTCATATCGGGAATTGCCCCTTTTGGTGATTCTTTGGTCGTTCTAGCTTATATCCCTGGTGAAGACGATGGGGAGAAGGAATTTAGTAGCTCTGTTCCATCACGTCAGGGAAATGCACAGAGACCAGAAGTACGCGTTGTGACATGGAATAATGATGAACTTTCAACAGATGCCCTTCCTGTACATGGCTTTGAGCATTACAAGGCAAAGGACTATTCACTTGCTCATGCTCCTTTCTCAGGTAGCAGCTATGCTGGTGGTCAGTGGGCTGAAGGTGATGAACCACTGTACTATATTGTATCACCAAAGGATGTGGTCATAGCAAAACCCAGAGATGCTGAAGATCATATTGCTTGGCTTCTTCAACATGGTGCACACGAAAAAGCTTTGGCTGCAGTTGAAGCTGGCCAGGGACGAAGTGAACTTCTTGATGAGGTTGGTTCTAGATACCTTGATCATTTGATTGTGGAAAGAAAATATGCCGAAGCAGCATCTTTGTGTCCCAAATTGTTGCGAGGATCGGCATCTGCATGGGAAAGATGGGTTTTCCACTTTGCTCATCTGCGTCAGCTTCCAGTACTAGTGCCATATATACCAACAGAAAACCCAAGATTACGTGATACTGCATATGAGGTTGCTCTTGTGGCTATTGCTACAAACCCATCTTTTCATTCGGAGCTCTTGTCAACTGTCAGATCATGGCCACCTGTGATTTATTCTGCATTGCCTGTAATCTCTGCTATAGAACCTCAGCTCAACACATCCTCCATGACAGATGCTCTTAAGGAGGCACTAGCAGAGTTGTATGTGATTGATGGGCAATATGAGAAAGCCTTTTCACTATATGCTGATCTTATGAACCCAAATGTATTTGCCTTCATCGAAAAACACAATCTATATGATTCGATTCGGGAAAAGGTCGTCCCACTGATGATGCTGGATTGCAAGCATGCTGTTCCTTTATTGATTCAAAATAAGGACTTGATTACTCCGTCTCAAGTTGTCAAACAACTTTTGAATGCGAGTGATAAGTGCGATTCCAGAAATTACTTGCATCTATATTTGCATTCACTATTTGAAGTAGACCCTCATGCTGGAAAAGATTTCCATGATATGCAGGTAGAGCTTTATGCAGACTATGATTCAAAGATGCTACTTCCTTTTCTTCGTAGTAGTCAACATTATACACTTGAGAAGGCATATGAAATTTGCATCAGAAAGGATCTTGTAAAGGAGCAAGTTTTCATTCTTGGAAGAATGGGAAATGCAAAACAAGCCCTTGCTATAATCATTAATAAACTAGGGGACATTGAAGAGGCTGTAGAATTTGTGAGTATGCAACATGATGATGAACTATGGGAGGAATTGATCCAGCAGTGTCTTCATAAACCTGAGATGGTCGGCGTGCTATTGGAGCACACTGTTGGAAATCTTGATCCTCTTTATATTGTGAATATGGTTCCCAATGGACTGGAGATTCCTCTGCTCAGGGATAGGCTAGTCAAAATTATCACCAATTACAGGACTGAAACATCTCTAAGACATGGGTGCAATGACATCCTTAAGGCTGATATTGTGAACCTCTTGGTCAAATACTACAATGAGGCAAGACATGGAATTTACTTGAGCAATGAAGAAGATGAGGCACGAGCAAAAAGGAATGATGGTAGGACTTCTCAAGTGGTTGAGAAATCATCTGGTGTGAGAAGTATGGAGGTTAAATCAAAATCGAAGGGTGGTGCAAGGTGTTGCATATGTTTCGATCCGTTTTCTATACAGAGTGTTAATGTCATTGTTTTCTTTTGCTGTCATGCTTATCACATGACTTGTCTTATGGATTCCACCTACACTAGTGGAATGAATGGGAGTGGGATCACTTCCCCGGAGAGAGTAACAGATTATGGGTATGATGATAGTGATGTAGATGATGATGGTGATGATGGTCCCCAATCGGGTGGCTCTCGCATGCGTTGTATCTTATGTACTACTGCTAGTGGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019899 GO:0030897 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033263 GO:0033365 GO:0034613 GO:0035542 GO:0042144 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048284 GO:0050789 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0097576 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Clathrin

Protein Analysis

957

Amino Acids

106.95

Weight (kDa)

4.95

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Vps41	PF23411	43 - 399	2.1e-99	Vps42 beta-propeller
Beta-prop_WDR3_1st	PF25173	63 - 132	5e-06	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	63 - 132	6.4e-06	WDHD1 first WD40 domain
TPR_Vps41	PF23556	435 - 775	1.7e-148	Vps41 TPR-like region
Clathrin	PF00637	635 - 753	2.1e-09	Region in Clathrin and VPS
zf-RING_Vps41	PF23555	872 - 915	3.8e-13	Vps41 C-terminal RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08190
fragaria_vesca	FvH4_3g30370 FvH4_3g30370 FvH4_3g30370 FvH4_3g30370 FvH4_3g30370
malus_domestica	MD03G1129800.v1.1 MD11G1151700.v1.1
prunus_persica	Prupe.6G114800_v2.0.a1 Prupe.6G114800_v2.0.a1
pyrus_communis	pycom11g12380 pycom11g12390
rosa_chinensis	RchiOBHm_Chr5g0056311
rosa_laevigata	RLG00000035067 RLG00000035070 RLG00000035077 RLG00000035080 RLG00000035082
rosa_multiflora	Rmu_sc0000680.1_g000003
rosa_roxburghii	Rroxscaffold_1G00024010
rosa_rugosa	Rorug05G0298600 Rorug05G0298700 Rorug05G0298800
rosa_samantha	Rh5AG369600 Rh5BG380500 Rh5CG404000 Rh5DG393600
rosa_wichuraiana	Rw0G004390 Rw0G012630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	180
Acc36I	ACCTGC	1 cut(s)	1978
AccB7I	CCANNNNNTGG	1 cut(s)	142
AccBSI	CCGCTC	1 cut(s)	205
AccI	GTMKAC	1 cut(s)	1953
AccII	CGCG	2 cut(s)	215, 1005
AciI	CCGC	5 cut(s)	14, 200, 205, 231, 569
AclWI	GGATC	7 cut(s)	431, 1396, 2100, 2233, 2300, 2627, 2750
AcoI	YGGCCR	2 cut(s)	1276, 1571
AcsI	RAATTY	5 cut(s)	275, 950, 2076, 2195, 2487
AcuI	CTGAAG	2 cut(s)	1161, 1230
AcvI	CACGTG	1 cut(s)	671
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	7 cut(s)	134, 862, 1002, 1053, 1160, 1449, 2854
AfiI	CCNNNNNNNGG	8 cut(s)	23, 142, 421, 1055, 1109, 1964, 2391, 2822
AflII	CTTAAG	2 cut(s)	1652, 2432
AflIII	ACRYGT	1 cut(s)	1003
AgsI	TTSAA	9 cut(s)	505, 1035, 1235, 1271, 1841, 1888, 1949, 2016, 2183
AhlI	ACTAGT	2 cut(s)	1450, 2720
AjiI	CACGTC	2 cut(s)	683, 974
AjnI	CCWGG	3 cut(s)	834, 925, 1278
Alw21I	GWGCWC	3 cut(s)	1246, 1551, 2289
Alw26I	GTCTC	4 cut(s)	30, 593, 985, 1869
Alw44I	GTGCAC	1 cut(s)	1242
AlwI	GGATC	7 cut(s)	431, 1396, 2100, 2233, 2300, 2627, 2750
Ama87I	CYCGRG	1 cut(s)	218
AoxI	GGCC	4 cut(s)	490, 809, 1276, 1571
ApaLI	GTGCAC	1 cut(s)	1242
ApeKI	GCWGC	6 cut(s)	150, 293, 791, 1116, 1262, 1358
ApoI	RAATTY	5 cut(s)	275, 950, 2076, 2195, 2487
AseI	ATTAAT	1 cut(s)	2163
Asp700I	GAANNNNTTC	1 cut(s)	343
AspLEI	GCGC	2 cut(s)	217, 648
AspS9I	GGNCC	2 cut(s)	557, 2813
AsuC2I	CCSGG	1 cut(s)	2753
AsuHPI	GGTGA	9 cut(s)	338, 563, 583, 908, 941, 1157, 1164, 2374, 2816
AvaI	CYCGRG	1 cut(s)	218
AvaII	GGWCC	2 cut(s)	557, 2813
BaeGI	GKGCMC	1 cut(s)	1246
BalI	TGGCCA	2 cut(s)	1278, 1573
BanII	GRGCYC	2 cut(s)	486, 1551
BauI	CACGAG	1 cut(s)	2517
BbrPI	CACGTG	1 cut(s)	671
BbsI	GAAGAC	2 cut(s)	939, 2243
Bbv12I	GWGCWC	3 cut(s)	1246, 1551, 2289
BbvCI	CCTCAGC	1 cut(s)	1620
BbvI	GCAGC	6 cut(s)	162, 280, 803, 1128, 1249, 1370
BceAI	ACGGC	3 cut(s)	40, 179, 244
BcgI	CGANNNNNNTGC	2 cut(s)	2611, 2645
BciT130I	CCWGG	3 cut(s)	836, 927, 1280
BclI	TGATCA	2 cut(s)	640, 1324
BcnI	CCSGG	1 cut(s)	2753
BcoDI	GTCTC	4 cut(s)	30, 593, 985, 1869
BcuI	ACTAGT	2 cut(s)	1450, 2720
BfmI	CTRYAG	4 cut(s)	432, 1263, 1611, 2190
BfrI	CTTAAG	2 cut(s)	1652, 2432
BfuAI	ACCTGC	1 cut(s)	1978
BisI	GCNGC	6 cut(s)	151, 294, 792, 1117, 1263, 1359
BlsI	GCNGC	6 cut(s)	152, 295, 793, 1118, 1264, 1360
BmcAI	AGTACT	1 cut(s)	1449
Bme1390I	CCNGG	4 cut(s)	836, 927, 1280, 2753
Bme18I	GGWCC	2 cut(s)	557, 2813
BmeT110I	CYCGRG	1 cut(s)	218
BmgBI	CACGTC	2 cut(s)	683, 974
BmgT120I	GGNCC	2 cut(s)	557, 2813
BmiI	GGNNCC	5 cut(s)	6, 120, 558, 2331, 2815
BmrFI	CCNGG	4 cut(s)	836, 927, 1280, 2753
BmrI	ACTGGG	1 cut(s)	812
BmuI	ACTGGG	1 cut(s)	812
BpiI	GAAGAC	2 cut(s)	939, 2243
BpmI	CTGGAG	1 cut(s)	2363
Bpu10I	CCTNAGC	3 cut(s)	687, 1620, 2357
BpuEI	CTTGAG	5 cut(s)	113, 1851, 2081, 2515, 2532
BpuMI	CCSGG	1 cut(s)	2753
BsaAI	YACGTR	2 cut(s)	671, 1487
BsaBI	GATNNNNATC	1 cut(s)	1393
BsaHI	GRCGYC	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	985
BsaJI	CCNNGG	5 cut(s)	122, 195, 925, 1279, 2751
BsaXI	ACNNNNNCTCC	6 cut(s)	571, 601, 1538, 1568, 1619, 1649
Bsc4I	CCNNNNNNNGG	8 cut(s)	23, 142, 421, 1055, 1109, 1964, 2391, 2822
Bse1I	ACTGG	4 cut(s)	818, 825, 1445, 2346
Bse3DI	GCAATG	5 cut(s)	591, 735, 1592, 2428, 2506
Bse8I	GATNNNNATC	1 cut(s)	1393
BseBI	CCWGG	3 cut(s)	836, 927, 1280
BseDI	CCNNGG	5 cut(s)	122, 195, 925, 1279, 2751
BseGI	GGATG	6 cut(s)	213, 724, 851, 1186, 1631, 2427
BseJI	GATNNNNATC	1 cut(s)	1393
BseLI	CCNNNNNNNGG	8 cut(s)	23, 142, 421, 1055, 1109, 1964, 2391, 2822
BseMI	GCAATG	5 cut(s)	591, 735, 1592, 2428, 2506
BseMII	CTCAG	5 cut(s)	678, 1122, 1634, 2253, 2371
BseNI	ACTGG	4 cut(s)	818, 825, 1445, 2346
BseSI	GKGCMC	1 cut(s)	1246
BseXI	GCAGC	6 cut(s)	162, 280, 803, 1128, 1249, 1370
Bsh1236I	CGCG	2 cut(s)	215, 1005
BshFI	GGCC	4 cut(s)	492, 811, 1278, 1573
BsiHKAI	GWGCWC	3 cut(s)	1246, 1551, 2289
BsiHKCI	CYCGRG	1 cut(s)	218
BsiSI	CCGG	1 cut(s)	2753
BslFI	GGGAC	8 cut(s)	235, 247, 800, 1296, 1356, 1778, 2189, 2799
BslI	CCNNNNNNNGG	8 cut(s)	23, 142, 421, 1055, 1109, 1964, 2391, 2822
BsmAI	GTCTC	4 cut(s)	30, 593, 985, 1869
BsmBI	CGTCTC	2 cut(s)	30, 1869
BsmFI	GGGAC	8 cut(s)	235, 247, 800, 1296, 1356, 1778, 2189, 2799
BsmI	GAATGC	4 cut(s)	153, 544, 1894, 1936
BsnI	GGCC	4 cut(s)	492, 811, 1278, 1573
Bso31I	GGTCTC	1 cut(s)	985
BsoBI	CYCGRG	1 cut(s)	218
Bsp1286I	GDGCHC	4 cut(s)	486, 1246, 1551, 2289
Bsp1407I	TGTACA	1 cut(s)	1051
BspACI	CCGC	5 cut(s)	14, 200, 205, 231, 569
BspANI	GGCC	4 cut(s)	492, 811, 1278, 1573
BspCNI	CTCAG	5 cut(s)	679, 1121, 1633, 2254, 2370
BspFNI	CGCG	2 cut(s)	215, 1005
BspLI	GGNNCC	5 cut(s)	6, 120, 558, 2331, 2815
BspMAI	CTGCAG	1 cut(s)	1267
BspMI	ACCTGC	1 cut(s)	1978
BspPI	GGATC	7 cut(s)	431, 1396, 2100, 2233, 2300, 2627, 2750
BspTI	CTTAAG	2 cut(s)	1652, 2432
BspTNI	GGTCTC	1 cut(s)	985
BsrBI	CCGCTC	1 cut(s)	205
BsrDI	GCAATG	5 cut(s)	591, 735, 1592, 2428, 2506
BsrGI	TGTACA	1 cut(s)	1051
BsrI	ACTGG	4 cut(s)	818, 825, 1445, 2346
BssECI	CCNNGG	5 cut(s)	122, 195, 925, 1279, 2751
BssNI	GRCGYC	1 cut(s)	177
BssSI	CACGAG	1 cut(s)	2517
Bst2BI	CACGAG	1 cut(s)	2517
Bst2UI	CCWGG	3 cut(s)	836, 927, 1280
Bst4CI	ACNGT	4 cut(s)	729, 1158, 1561, 2293
Bst6I	CTCTTC	5 cut(s)	60, 87, 93, 102, 2178
BstACI	GRCGYC	1 cut(s)	177
BstAFI	CTTAAG	2 cut(s)	1652, 2432
BstAUI	TGTACA	1 cut(s)	1051
BstBAI	YACGTR	2 cut(s)	671, 1487
BstC8I	GCNNGC	8 cut(s)	486, 490, 613, 1276, 1817, 1821, 2276, 2837
BstDEI	CTNAG	9 cut(s)	308, 687, 706, 1108, 1620, 2262, 2357, 2408, 2871
BstDSI	CCRYGG	1 cut(s)	195
BstENI	CCTNNNNNAGG	1 cut(s)	1107
BstF5I	GGATG	6 cut(s)	213, 724, 851, 1186, 1631, 2427
BstFNI	CGCG	2 cut(s)	215, 1005
BstHHI	GCGC	2 cut(s)	217, 648
BstMAI	GTCTC	4 cut(s)	30, 593, 985, 1869
BstNI	CCWGG	3 cut(s)	836, 927, 1280
BstNSI	RCATGY	3 cut(s)	569, 1823, 2839
BstSCI	CCNGG	4 cut(s)	834, 925, 1278, 2751
BstSFI	CTRYAG	4 cut(s)	432, 1263, 1611, 2190
BstSLI	GKGCMC	1 cut(s)	1246
BstUI	CGCG	2 cut(s)	215, 1005
BstV1I	GCAGC	6 cut(s)	162, 280, 803, 1128, 1249, 1370
BstV2I	GAAGAC	2 cut(s)	939, 2243
BstX2I	RGATCY	2 cut(s)	436, 2092
BstXI	CCANNNNNNTGG	2 cut(s)	2341, 2825
BstYI	RGATCY	2 cut(s)	436, 2092
BsuRI	GGCC	4 cut(s)	492, 811, 1278, 1573
BtgI	CCRYGG	1 cut(s)	195
BtgZI	GCGATG	1 cut(s)	395
BtrI	CACGTC	2 cut(s)	683, 974
BtsCI	GGATG	6 cut(s)	213, 724, 851, 1186, 1631, 2427
BtsI	GCAGTG	1 cut(s)	2252
BtsIMutI	CAGTG	6 cut(s)	725, 1139, 1154, 1796, 2252, 2289
BveI	ACCTGC	1 cut(s)	1978
Cac8I	GCNNGC	8 cut(s)	486, 490, 613, 1276, 1817, 1821, 2276, 2837
CfoI	GCGC	2 cut(s)	217, 648
Cfr13I	GGNCC	2 cut(s)	557, 2813
CseI	GACGC	2 cut(s)	232, 1424
CsiI	ACCWGGT	1 cut(s)	834
Csp6I	GTAC	7 cut(s)	133, 861, 1001, 1052, 1159, 1448, 2853
CspCI	CAANNNNNGTGG	2 cut(s)	1164, 1199
CviQI	GTAC	7 cut(s)	133, 861, 1001, 1052, 1159, 1448, 2853
DdeI	CTNAG	9 cut(s)	308, 687, 706, 1108, 1620, 2262, 2357, 2408, 2871
DraI	TTTAAA	1 cut(s)	529
EaeI	YGGCCR	2 cut(s)	1276, 1571
Eam1104I	CTCTTC	5 cut(s)	60, 87, 93, 102, 2178
EarI	CTCTTC	5 cut(s)	60, 87, 93, 102, 2178
EciI	GGCGGA	1 cut(s)	215
Ecl136II	GAGCTC	1 cut(s)	1549
Eco147I	AGGCCT	1 cut(s)	811
Eco24I	GRGCYC	2 cut(s)	486, 1551
Eco31I	GGTCTC	1 cut(s)	985
Eco47I	GGWCC	2 cut(s)	557, 2813
Eco53kI	GAGCTC	1 cut(s)	1549
Eco57I	CTGAAG	2 cut(s)	1161, 1230
Eco72I	CACGTG	1 cut(s)	671
Eco88I	CYCGRG	1 cut(s)	218
EcoICRI	GAGCTC	1 cut(s)	1549
EcoNI	CCTNNNNNAGG	1 cut(s)	1107
EcoRII	CCWGG	3 cut(s)	834, 925, 1278
EcoT38I	GRGCYC	2 cut(s)	486, 1551
Esp3I	CGTCTC	2 cut(s)	30, 1869
FaqI	GGGAC	8 cut(s)	235, 247, 800, 1296, 1356, 1778, 2189, 2799
FauI	CCCGC	1 cut(s)	224
FauNDI	CATATG	3 cut(s)	1498, 2071, 2624
FbaI	TGATCA	2 cut(s)	640, 1324
FblI	GTMKAC	1 cut(s)	1953
Fnu4HI	GCNGC	6 cut(s)	151, 294, 792, 1117, 1263, 1359
FokI	GGATG	6 cut(s)	220, 731, 838, 1193, 1618, 2414
FriOI	GRGCYC	2 cut(s)	486, 1551
Fsp4HI	GCNGC	6 cut(s)	151, 294, 792, 1117, 1263, 1359
GlaI	GCGC	2 cut(s)	216, 647
GluI	GCNGC	6 cut(s)	151, 294, 792, 1117, 1263, 1359
GsuI	CTGGAG	1 cut(s)	2363
HaeIII	GGCC	4 cut(s)	492, 811, 1278, 1573
HapII	CCGG	1 cut(s)	2753
HgaI	GACGC	2 cut(s)	232, 1424
HhaI	GCGC	2 cut(s)	217, 648
Hin1I	GRCGYC	1 cut(s)	177
Hin6I	GCGC	2 cut(s)	215, 646
HinP1I	GCGC	2 cut(s)	215, 646
HincII	GTYRAC	2 cut(s)	1557, 2048
HindII	GTYRAC	2 cut(s)	1557, 2048
HindIII	AAGCTT	1 cut(s)	1254
HinfI	GANTC	9 cut(s)	10, 899, 1772, 1777, 1837, 1907, 2012, 2347, 2708
HpaII	CCGG	1 cut(s)	2753
HphI	GGTGA	9 cut(s)	338, 563, 583, 908, 941, 1157, 1164, 2374, 2816
Hpy166II	GTNNAC	6 cut(s)	1244, 1292, 1557, 1954, 2048, 2449
Hpy188I	TCNGA	5 cut(s)	9, 349, 1546, 1565, 2087
Hpy8I	GTNNAC	6 cut(s)	1244, 1292, 1557, 1954, 2048, 2449
Hpy99I	CGWCG	2 cut(s)	179, 182
HpyAV	CCTTC	9 cut(s)	26, 317, 415, 940, 1055, 1136, 1756, 2059, 2596
HpyCH4III	ACNGT	4 cut(s)	729, 1158, 1561, 2293
HpyCH4IV	ACGT	5 cut(s)	177, 670, 682, 973, 1486
HpyF3I	CTNAG	9 cut(s)	308, 687, 706, 1108, 1620, 2262, 2357, 2408, 2871
HpySE526I	ACGT	5 cut(s)	177, 670, 682, 973, 1486
Hsp92I	GRCGYC	1 cut(s)	177
HspAI	GCGC	2 cut(s)	215, 646
Ksp22I	TGATCA	2 cut(s)	640, 1324
LmnI	GCTCC	9 cut(s)	10, 118, 202, 702, 1105, 1546, 2104, 2284, 2867
Lsp1109I	GCAGC	6 cut(s)	162, 280, 803, 1128, 1249, 1370
MabI	ACCWGGT	1 cut(s)	834
MaeII	ACGT	5 cut(s)	177, 670, 682, 973, 1486
MaeIII	GTNAC	2 cut(s)	1009, 2761
MbiI	CCGCTC	1 cut(s)	205
MflI	RGATCY	2 cut(s)	436, 2092
MhlI	GDGCHC	4 cut(s)	486, 1246, 1551, 2289
MlsI	TGGCCA	2 cut(s)	1278, 1573
MluI	ACGCGT	1 cut(s)	1003
MluNI	TGGCCA	2 cut(s)	1278, 1573
MmeI	TCCRAC	1 cut(s)	2275
Mox20I	TGGCCA	2 cut(s)	1278, 1573
MroXI	GAANNNNTTC	1 cut(s)	343
MscI	TGGCCA	2 cut(s)	1278, 1573
MseI	TTAA	6 cut(s)	528, 1653, 2163, 2433, 2589, 2655
MslI	CAYNNNNRTG	4 cut(s)	549, 1366, 1399, 2217
Msp20I	TGGCCA	2 cut(s)	1278, 1573
MspCI	CTTAAG	2 cut(s)	1652, 2432
MspI	CCGG	1 cut(s)	2753
MspR9I	CCNGG	4 cut(s)	836, 927, 1280, 2753
Mva1269I	GAATGC	4 cut(s)	153, 544, 1894, 1936
MvaI	CCWGG	3 cut(s)	836, 927, 1280
MvnI	CGCG	2 cut(s)	215, 1005
NciI	CCSGG	1 cut(s)	2753
NdeI	CATATG	3 cut(s)	1498, 2071, 2624
NlaIV	GGNNCC	5 cut(s)	6, 120, 558, 2331, 2815
NmeAIII	GCCGAG	2 cut(s)	147, 237
NmuCI	GTSAC	1 cut(s)	1009
NspI	RCATGY	3 cut(s)	569, 1823, 2839
PaeI	GCATGC	2 cut(s)	1823, 2839
PceI	AGGCCT	1 cut(s)	811
PcsI	WCGNNNNNNNCGW	1 cut(s)	167
PctI	GAATGC	4 cut(s)	153, 544, 1894, 1936
PdmI	GAANNNNTTC	1 cut(s)	343
PfeI	GAWTC	9 cut(s)	10, 899, 1772, 1777, 1837, 1907, 2012, 2347, 2708
PflMI	CCANNNNNTGG	1 cut(s)	142
PkrI	GCNGC	6 cut(s)	152, 295, 793, 1118, 1264, 1360
PmaCI	CACGTG	1 cut(s)	671
PmlI	CACGTG	1 cut(s)	671
Ppu21I	YACGTR	2 cut(s)	671, 1487
PshBI	ATTAAT	1 cut(s)	2163
Psp124BI	GAGCTC	1 cut(s)	1551
Psp6I	CCWGG	3 cut(s)	834, 925, 1278
PspCI	CACGTG	1 cut(s)	671
PspGI	CCWGG	3 cut(s)	834, 925, 1278
PspN4I	GGNNCC	5 cut(s)	6, 120, 558, 2331, 2815
PspPI	GGNCC	2 cut(s)	557, 2813
PstI	CTGCAG	1 cut(s)	1267
PsuI	RGATCY	2 cut(s)	436, 2092
RsaI	GTAC	7 cut(s)	134, 862, 1002, 1053, 1160, 1449, 2854
RsaNI	GTAC	7 cut(s)	133, 861, 1001, 1052, 1159, 1448, 2853
RseI	CAYNNNNRTG	4 cut(s)	549, 1366, 1399, 2217
SacI	GAGCTC	1 cut(s)	1551
SaqAI	TTAA	6 cut(s)	528, 1653, 2163, 2433, 2589, 2655
SatI	GCNGC	6 cut(s)	151, 294, 792, 1117, 1263, 1359
Sau96I	GGNCC	2 cut(s)	557, 2813
ScaI	AGTACT	1 cut(s)	1449
ScrFI	CCNGG	4 cut(s)	836, 927, 1280, 2753
SduI	GDGCHC	4 cut(s)	486, 1246, 1551, 2289
SexAI	ACCWGGT	1 cut(s)	834
SfcI	CTRYAG	4 cut(s)	432, 1263, 1611, 2190
SinI	GGWCC	2 cut(s)	557, 2813
SmiMI	CAYNNNNRTG	4 cut(s)	549, 1366, 1399, 2217
SmlI	CTYRAG	7 cut(s)	128, 1652, 1866, 2060, 2432, 2494, 2547
SmoI	CTYRAG	7 cut(s)	128, 1652, 1866, 2060, 2432, 2494, 2547
SpeI	ACTAGT	2 cut(s)	1450, 2720
SphI	GCATGC	2 cut(s)	1823, 2839
SseBI	AGGCCT	1 cut(s)	811
SsiI	CCGC	5 cut(s)	14, 200, 205, 231, 569
SstI	GAGCTC	1 cut(s)	1551
StuI	AGGCCT	1 cut(s)	811
StyD4I	CCNGG	4 cut(s)	834, 925, 1278, 2751
TaaI	ACNGT	4 cut(s)	729, 1158, 1561, 2293
TaiI	ACGT	5 cut(s)	180, 673, 685, 976, 1489
TaqI	TCGA	5 cut(s)	249, 1752, 1775, 2600, 2631
TatI	WGTACW	4 cut(s)	1051, 1158, 1447, 2852
TfiI	GAWTC	9 cut(s)	10, 899, 1772, 1777, 1837, 1907, 2012, 2347, 2708
Tru1I	TTAA	6 cut(s)	528, 1653, 2163, 2433, 2589, 2655
Tru9I	TTAA	6 cut(s)	528, 1653, 2163, 2433, 2589, 2655
TscAI	CASTG	6 cut(s)	732, 1139, 1161, 1803, 2252, 2296
TseFI	GTSAC	1 cut(s)	1009
TseI	GCWGC	6 cut(s)	150, 293, 791, 1116, 1262, 1358
Tsp45I	GTSAC	1 cut(s)	1009
TspGWI	ACGGA	2 cut(s)	1851, 2625
TspRI	CASTG	6 cut(s)	732, 1139, 1161, 1803, 2252, 2296
Van91I	CCANNNNNTGG	1 cut(s)	142
Vha464I	CTTAAG	2 cut(s)	1652, 2432
VneI	GTGCAC	1 cut(s)	1242
VpaK11BI	GGWCC	2 cut(s)	557, 2813
VspI	ATTAAT	1 cut(s)	2163
XagI	CCTNNNNNAGG	1 cut(s)	1107
XapI	RAATTY	5 cut(s)	275, 950, 2076, 2195, 2487
XbaI	TCTAGA	2 cut(s)	461, 1313
XceI	RCATGY	3 cut(s)	569, 1823, 2839
XmiI	GTMKAC	1 cut(s)	1953
XmnI	GAANNNNTTC	1 cut(s)	343
ZraI	GACGTC	1 cut(s)	178
ZrmI	AGTACT	1 cut(s)	1449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.