Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005429

Physical Location & Seq

Genomic Coordinates Reverse (-)

34544012 .. 34545196

Gene Structure 1185 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0298700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGATCCACAAACCTAGGGATTGTGTTTTTGAGTTTGTCTCGGATTTGATTGACTCACATACAAGACAATGGATTCCAGAGGCAGTAAATGCCATCTTTCCACCTGAAGTAGCTCACAAGGTATTTAGTATTCCTCTCAGTCGTCGAAATCATTGTGATAAGATTTGTTGGAGTCCAGAGAAAAGAGGCTTCTATTCTGTTAAAACAGCATACTGGATAGCTCGAACTCGGGTTTTAGAGAATGTTCTTGTCTCTACCTCTAGTGGTGATCCATTTCAGGAACTGTGGAAGAGACTTTGGAGTGCCAAAGTTCCGGGGAAGGTGCAGATCTGCGTATGGAGAGCATGCTCCAATTTGCTTCCTACACGAGCTAAACTTCTAACTAAAGGATATGAGGGAGACCTTCATTGCCTGCTGTGTTCTCATCTGTATGAGGACACCTCCCATATCTTTTGTACGTGCCCAACTGCAGCTGCTATTCTAGCTGCACCACCTTTCCAGTTTAACAGCACTATACTGCCTCGTATGGACCTAAAGGAATGGATGCTTGAACAGGCGTTGCACTTGAAGAAGGAGACCTGGAAGCCTCCGGCAGTGGGAACGTGGAAACTTAATGTTGATGGTAGCTTCATTCCAAATACCACTCTGGGTGGTGTGGGAAGTGTTTTACCCGATGACAGAGGTAACTTTAGGGCTGCTTTTGCGAAACCTATCTCTAATGTGGCCTCTGCAAAACAGGTGGAACTTAGGGCTATCAAAGAGGGTCTCAACTTGGTGGCAACTGTTGGCAACGTTGTCATCGAAACTGATTGTTTGGACGCGGTATCCAGCATTGCAGACATGCAGTACACGTATTTGCATGAGGAAGGTTTGCTGGATGACATCAGGCACGAACTTCATCTGAGGAGCGACATTGTAGTGCAGCATACCTCCAGAGTTTGCAATAGAGTTGCTCACTGTCTAGCAAACTCAGTCTATGACGTGGGAAATGCCTGTATTTGGCAGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019899 GO:0030897 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033263 GO:0033365 GO:0034613 GO:0035542 GO:0042144 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048284 GO:0050789 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0097576 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Clathrin

Protein Analysis

336

Amino Acids

37.78

Weight (kDa)

7.57

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	65 - 159	4.1e-15	zinc-binding in reverse transcriptase
RVT_3	PF13456	205 - 324	3e-18	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08190
fragaria_vesca	FvH4_3g30370 FvH4_3g30370 FvH4_3g30370 FvH4_3g30370 FvH4_3g30370
malus_domestica	MD03G1129800.v1.1 MD11G1151700.v1.1
prunus_persica	Prupe.6G114800_v2.0.a1 Prupe.6G114800_v2.0.a1
pyrus_communis	pycom11g12380 pycom11g12390
rosa_chinensis	RchiOBHm_Chr5g0056311
rosa_laevigata	RLG00000035067 RLG00000035070 RLG00000035077 RLG00000035080 RLG00000035082
rosa_multiflora	Rmu_sc0000680.1_g000003
rosa_roxburghii	Rroxscaffold_1G00024010
rosa_rugosa	Rorug05G0298600 Rorug05G0298700 Rorug05G0298800
rosa_samantha	Rh5AG369600 Rh5BG380500 Rh5CG404000 Rh5DG393600
rosa_wichuraiana	Rw0G004390 Rw0G012630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	821
AciI	CCGC	1 cut(s)	821
AclI	AACGTT	1 cut(s)	792
AclWI	GGATC	1 cut(s)	263
AcuI	CTGAAG	1 cut(s)	126
AfaI	GTAC	2 cut(s)	457, 848
AfiI	CCNNNNNNNGG	2 cut(s)	596, 999
AflIII	ACRYGT	1 cut(s)	849
AgsI	TTSAA	2 cut(s)	551, 568
AjiI	CACGTC	1 cut(s)	982
AjnI	CCWGG	1 cut(s)	578
AluBI	AGCT	6 cut(s)	113, 221, 371, 473, 485, 627
AluI	AGCT	6 cut(s)	113, 221, 371, 473, 485, 627
Alw26I	GTCTC	6 cut(s)	43, 256, 286, 393, 569, 770
AlwI	GGATC	1 cut(s)	263
AlwNI	CAGNNNCTG	1 cut(s)	283
Ama87I	CYCGRG	1 cut(s)	228
AoxI	GGCC	1 cut(s)	723
ApeKI	GCWGC	5 cut(s)	470, 473, 485, 695, 922
AspA2I	CCTAGG	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	529
AsuC2I	CCSGG	1 cut(s)	315
AsuHPI	GGTGA	1 cut(s)	278
AvaI	CYCGRG	1 cut(s)	228
AvaII	GGWCC	1 cut(s)	529
AvrII	CCTAGG	1 cut(s)	14
BaeGI	GKGCMC	1 cut(s)	464
BauI	CACGAG	1 cut(s)	366
BbvI	GCAGC	5 cut(s)	460, 472, 482, 682, 934
BccI	CCATC	2 cut(s)	101, 614
BciT130I	CCWGG	1 cut(s)	580
BciVI	GTATCC	1 cut(s)	835
BcnI	CCSGG	1 cut(s)	315
BcoDI	GTCTC	6 cut(s)	43, 256, 286, 393, 569, 770
BfaI	CTAG	4 cut(s)	15, 261, 482, 962
BfmI	CTRYAG	1 cut(s)	468
BfuI	GTATCC	1 cut(s)	835
BglII	AGATCT	1 cut(s)	327
BisI	GCNGC	5 cut(s)	471, 474, 486, 696, 923
BlnI	CCTAGG	1 cut(s)	14
BlsI	GCNGC	5 cut(s)	472, 475, 487, 697, 924
Bme1390I	CCNGG	2 cut(s)	315, 580
Bme18I	GGWCC	1 cut(s)	529
BmeT110I	CYCGRG	1 cut(s)	228
BmgBI	CACGTC	1 cut(s)	982
BmgT120I	GGNCC	1 cut(s)	529
BmrFI	CCNGG	2 cut(s)	315, 580
BmsI	GCATC	1 cut(s)	534
BplI	GAGNNNNNCTC	4 cut(s)	23, 55, 425, 457
BpmI	CTGGAG	1 cut(s)	916
BpuMI	CCSGG	1 cut(s)	315
BsaAI	YACGTR	2 cut(s)	459, 852
BsaI	GGTCTC	3 cut(s)	393, 569, 770
BsaJI	CCNNGG	2 cut(s)	14, 314
Bsc4I	CCNNNNNNNGG	2 cut(s)	596, 999
Bse1I	ACTGG	2 cut(s)	218, 499
Bse3DI	GCAATG	2 cut(s)	406, 831
BseBI	CCWGG	1 cut(s)	580
BseDI	CCNNGG	2 cut(s)	14, 314
BseGI	GGATG	2 cut(s)	549, 883
BseLI	CCNNNNNNNGG	2 cut(s)	596, 999
BseMI	GCAATG	2 cut(s)	406, 831
BseMII	CTCAG	3 cut(s)	151, 893, 984
BseNI	ACTGG	2 cut(s)	218, 499
BseRI	GAGGAG	1 cut(s)	919
BseSI	GKGCMC	1 cut(s)	464
BseXI	GCAGC	5 cut(s)	460, 472, 482, 682, 934
BsgI	GTGCAG	3 cut(s)	344, 471, 941
Bsh1236I	CGCG	1 cut(s)	821
BshFI	GGCC	1 cut(s)	725
BsiHKCI	CYCGRG	1 cut(s)	228
BsiSI	CCGG	2 cut(s)	314, 590
BslI	CCNNNNNNNGG	2 cut(s)	596, 999
BsmAI	GTCTC	6 cut(s)	43, 256, 286, 393, 569, 770
BsnI	GGCC	1 cut(s)	725
Bso31I	GGTCTC	3 cut(s)	393, 569, 770
BsoBI	CYCGRG	1 cut(s)	228
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp143I	GATC	3 cut(s)	3, 268, 327
BspACI	CCGC	1 cut(s)	821
BspANI	GGCC	1 cut(s)	725
BspCNI	CTCAG	3 cut(s)	150, 894, 983
BspFNI	CGCG	1 cut(s)	821
BspMAI	CTGCAG	1 cut(s)	472
BspPI	GGATC	1 cut(s)	263
BspTNI	GGTCTC	3 cut(s)	393, 569, 770
BsrDI	GCAATG	2 cut(s)	406, 831
BsrI	ACTGG	2 cut(s)	218, 499
BssECI	CCNNGG	2 cut(s)	14, 314
BssMI	GATC	3 cut(s)	3, 268, 327
BssSI	CACGAG	1 cut(s)	366
BssT1I	CCWWGG	1 cut(s)	14
Bst2BI	CACGAG	1 cut(s)	366
Bst2UI	CCWGG	1 cut(s)	580
Bst4CI	ACNGT	3 cut(s)	285, 784, 959
Bst6I	CTCTTC	1 cut(s)	284
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstBAI	YACGTR	2 cut(s)	459, 852
BstC8I	GCNNGC	2 cut(s)	346, 413
BstDEI	CTNAG	4 cut(s)	137, 746, 902, 970
BstF5I	GGATG	2 cut(s)	549, 883
BstFNI	CGCG	1 cut(s)	821
BstKTI	GATC	3 cut(s)	6, 271, 330
BstMAI	GTCTC	6 cut(s)	43, 256, 286, 393, 569, 770
BstMBI	GATC	3 cut(s)	3, 268, 327
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 482, 701
BstNI	CCWGG	1 cut(s)	580
BstNSI	RCATGY	2 cut(s)	348, 844
BstSCI	CCNGG	2 cut(s)	313, 578
BstSFI	CTRYAG	1 cut(s)	468
BstSLI	GKGCMC	1 cut(s)	464
BstUI	CGCG	1 cut(s)	821
BstV1I	GCAGC	5 cut(s)	460, 472, 482, 682, 934
BstX2I	RGATCY	1 cut(s)	327
BstYI	RGATCY	1 cut(s)	327
BsuI	GTATCC	1 cut(s)	835
BsuRI	GGCC	1 cut(s)	725
BtrI	CACGTC	1 cut(s)	982
BtsCI	GGATG	2 cut(s)	549, 883
BtsI	GCAGTG	1 cut(s)	600
BtsIMutI	CAGTG	2 cut(s)	600, 955
Cac8I	GCNNGC	2 cut(s)	346, 413
CaiI	CAGNNNCTG	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	529
CseI	GACGC	1 cut(s)	827
Csp6I	GTAC	2 cut(s)	456, 847
CspCI	CAANNNNNGTGG	2 cut(s)	720, 755
CviAII	CATG	3 cut(s)	345, 841, 860
CviQI	GTAC	2 cut(s)	456, 847
DdeI	CTNAG	4 cut(s)	137, 746, 902, 970
DpnI	GATC	3 cut(s)	5, 270, 329
DpnII	GATC	3 cut(s)	3, 268, 327
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
Eco130I	CCWWGG	1 cut(s)	14
Eco31I	GGTCTC	3 cut(s)	393, 569, 770
Eco47I	GGWCC	1 cut(s)	529
Eco57I	CTGAAG	1 cut(s)	126
Eco88I	CYCGRG	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	578
EcoT14I	CCWWGG	1 cut(s)	14
ErhI	CCWWGG	1 cut(s)	14
FaeI	CATG	3 cut(s)	348, 844, 863
FatI	CATG	3 cut(s)	344, 840, 859
Fnu4HI	GCNGC	5 cut(s)	471, 474, 486, 696, 923
FokI	GGATG	2 cut(s)	556, 890
Fsp4HI	GCNGC	5 cut(s)	471, 474, 486, 696, 923
FspBI	CTAG	4 cut(s)	15, 261, 482, 962
GluI	GCNGC	5 cut(s)	471, 474, 486, 696, 923
GsuI	CTGGAG	1 cut(s)	916
HaeIII	GGCC	1 cut(s)	725
HapII	CCGG	2 cut(s)	314, 590
HgaI	GACGC	1 cut(s)	827
Hin1II	CATG	3 cut(s)	348, 844, 863
HinfI	GANTC	3 cut(s)	53, 73, 172
HpaII	CCGG	2 cut(s)	314, 590
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	1 cut(s)	849
Hpy188I	TCNGA	2 cut(s)	43, 903
Hpy188III	TCNNGA	4 cut(s)	77, 176, 278, 933
Hpy8I	GTNNAC	1 cut(s)	849
Hpy99I	CGWCG	1 cut(s)	147
HpyAV	CCTTC	4 cut(s)	313, 413, 565, 860
HpyCH4III	ACNGT	3 cut(s)	285, 784, 959
HpyCH4IV	ACGT	5 cut(s)	458, 602, 792, 851, 981
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 482, 701
HpyF3I	CTNAG	4 cut(s)	137, 746, 902, 970
HpySE526I	ACGT	5 cut(s)	458, 602, 792, 851, 981
Hsp92II	CATG	3 cut(s)	348, 844, 863
Kzo9I	GATC	3 cut(s)	3, 268, 327
LmnI	GCTCC	2 cut(s)	353, 906
Lsp1109I	GCAGC	5 cut(s)	460, 472, 482, 682, 934
LweI	GCATC	1 cut(s)	534
MaeI	CTAG	4 cut(s)	15, 261, 482, 962
MaeII	ACGT	5 cut(s)	458, 602, 792, 851, 981
MaeIII	GTNAC	1 cut(s)	683
MalI	GATC	3 cut(s)	5, 270, 329
MboI	GATC	3 cut(s)	3, 268, 327
MboII	GAAGA	2 cut(s)	301, 580
MflI	RGATCY	1 cut(s)	327
MhlI	GDGCHC	1 cut(s)	464
MluCI	AATT	1 cut(s)	352
MlyI	GAGTC	2 cut(s)	47, 181
MmeI	TCCRAC	1 cut(s)	149
MseI	TTAA	3 cut(s)	201, 504, 612
MslI	CAYNNNNRTG	2 cut(s)	429, 917
MspA1I	CMGCKG	1 cut(s)	473
MspI	CCGG	2 cut(s)	314, 590
MspR9I	CCNGG	2 cut(s)	315, 580
MvaI	CCWGG	1 cut(s)	580
MvnI	CGCG	1 cut(s)	821
MwoI	GCNNNNNNNGC	3 cut(s)	89, 482, 701
NciI	CCSGG	1 cut(s)	315
NdeII	GATC	3 cut(s)	3, 268, 327
NlaIII	CATG	3 cut(s)	348, 844, 863
NspI	RCATGY	2 cut(s)	348, 844
PaeI	GCATGC	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	1 cut(s)	798
PfeI	GAWTC	1 cut(s)	73
PkrI	GCNGC	5 cut(s)	472, 475, 487, 697, 924
PleI	GAGTC	2 cut(s)	47, 180
PpsI	GAGTC	2 cut(s)	47, 180
Ppu21I	YACGTR	2 cut(s)	459, 852
Psp1406I	AACGTT	1 cut(s)	792
Psp6I	CCWGG	1 cut(s)	578
PspGI	CCWGG	1 cut(s)	578
PspPI	GGNCC	1 cut(s)	529
PstI	CTGCAG	1 cut(s)	472
PstNI	CAGNNNCTG	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	327
PvuII	CAGCTG	1 cut(s)	473
RsaI	GTAC	2 cut(s)	457, 848
RsaNI	GTAC	2 cut(s)	456, 847
RseI	CAYNNNNRTG	2 cut(s)	429, 917
SaqAI	TTAA	3 cut(s)	201, 504, 612
SatI	GCNGC	5 cut(s)	471, 474, 486, 696, 923
Sau3AI	GATC	3 cut(s)	3, 268, 327
Sau96I	GGNCC	1 cut(s)	529
SchI	GAGTC	2 cut(s)	47, 181
ScrFI	CCNGG	2 cut(s)	315, 580
SduI	GDGCHC	1 cut(s)	464
SfaNI	GCATC	1 cut(s)	534
SfcI	CTRYAG	1 cut(s)	468
SinI	GGWCC	1 cut(s)	529
SmiMI	CAYNNNNRTG	2 cut(s)	429, 917
SphI	GCATGC	1 cut(s)	348
Sse9I	AATT	1 cut(s)	352
SsiI	CCGC	1 cut(s)	821
SspMI	CTAG	4 cut(s)	15, 261, 482, 962
StyD4I	CCNGG	2 cut(s)	313, 578
StyI	CCWWGG	1 cut(s)	14
TaaI	ACNGT	3 cut(s)	285, 784, 959
TaiI	ACGT	5 cut(s)	461, 605, 795, 854, 984
TaqI	TCGA	3 cut(s)	145, 223, 801
TasI	AATT	1 cut(s)	352
TatI	WGTACW	1 cut(s)	846
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	3 cut(s)	201, 504, 612
Tru9I	TTAA	3 cut(s)	201, 504, 612
TscAI	CASTG	2 cut(s)	600, 962
TseI	GCWGC	5 cut(s)	470, 473, 485, 695, 922
TspDTI	ATGAA	3 cut(s)	395, 619, 887
TspRI	CASTG	2 cut(s)	600, 962
VpaK11BI	GGWCC	1 cut(s)	529
XceI	RCATGY	2 cut(s)	348, 844
XmaJI	CCTAGG	1 cut(s)	14
XspI	CTAG	4 cut(s)	15, 261, 482, 962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.