Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003128

Physical Location & Seq

Genomic Coordinates Reverse (-)

2573818 .. 2576844

Gene Structure 3027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G08200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGCGAACGGAGCCGATAGATTGGATCTGGACGGTAAACCGATTAAGCCGATGACGATATGCATGATCGGTGCCGGAGGTTTCATTGGCTCTCATCTCTGTGAGAAGCTTATGACGGAGACTCCTCACAAGGTTCTTGCGCTTGATGTTTACAATGATAAGATCAAGCACTTGCTTGAGCCTGATACCGTTCAATGGGCTGGTCGGATCCAGTTTCATCGTATCAACATTAAGCATGATTCTAGACTTGAAGGACTGATCAAGATGGCAGATCTGACGATAAATCTAGCTGCGATCTGTACTCCAGCAGATTACAATACGCGTCCTCTTGACACTATCTACAGCAATTTCATTGATGCTCTCCCAGTGGTTAAATACTGCTCAGAGAACAACAAGCGTCTGATTCACTTTTCCACTTGTGAAGTGTATGGAAAAACTATAGGAAGCTTTCTTCCAAAGGATCATCCTCTGCGTCAGGATCCTGAATTTTATGTACTCAAAGAAGATATATCCCCTTGCATCTTTGGTTCAATTGAGAAGCAGAGGTGGTCATATGCTTGTGCAAAGCAACTTATTGAGAGACTTGTTTACGCTGAGGGTGCTGAGAATGGACTCGAGTTCACCATTGTAAGACCATTCAACTGGATTGGACCTAGGATGGATTTCATCCCTGGCATTGATGGTCCTAGCGAGGGTGTCCCACGGGTTCTAGCGTGCTTTAGTAACAATCTTCTGCGACGGGAGCCTCTCAAGCTTGTGGATGGTGGAGAATCACAGAGAACCTTCATCTACATCAAAGATGCTATCGAAGCTGTCCTTTTGATGATCGAAAATCCAGAGAGAGCCAATGGGCATATCTTCAATGTAGGCAACCCAAACAATGAAGTGACAGTGAGACAACTTGCTGAAATGATGACTGAGGTCTACGCCAAAGTGAGTGGAGAGACAGCTATCGAGAGTCCAACGATCGACGTGAGCTCCAAAGAGTTTTATGGAGAAGGTTATGATGACAGCGACAAGAGAATCCCAGACATGACCATCATCAACCGTCAACTTGGATGGAACCCGAAGACGTCGCTTTGGGACTTGCTTGAATCGACCTTAACATACCAGCACACGACTTATGCGGAAGCCATTAAGAAGGCCACTTCAAAACCAGTCGCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009987 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0036094 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048037 GO:0048040 GO:0048046 GO:0050662 GO:0051287 GO:0055086 GO:0071704 GO:0097159 GO:1901135 GO:1901137 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Epimerase

Protein Analysis

389

Amino Acids

43.79

Weight (kDa)

5.58

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	20 - 290	3.1e-48	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	22 - 145	2.9e-06	3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd	PF16363	24 - 366	6.2e-29	GDP-mannose 4,6 dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08200
fragaria_vesca	FvH4_3g30060 FvH4_3g30060 FvH4_3g30060 FvH4_3g30060
malus_domestica	MD03G1131500.v1.1 MD03G1131900.v1.1 MD03G1161900.v1.1 MD11G1154500.v1.1 MD11G1215900.v1.1 MD16G1216600.v1.1 MD16G1216800.v1.1
prunus_persica	Prupe.6G116900_v2.0.a1 Prupe.6G116900_v2.0.a1 Prupe.6G116900_v2.0.a1
pyrus_communis	pycom11g12600 pycom11g12610
rosa_chinensis	RchiOBHm_Chr5g0055821
rosa_laevigata	RLG00000002609 RLG00000035011
rosa_multiflora	Rmu_sc0003306.1_g000005 Rmu_sc0003500.1_g000032 Rmu_sc0003500.1_g000033 Rmu_sc0007802.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024520 Rroxscaffold_1G00052150
rosa_rugosa	Rorug05G0295000
rosa_samantha	Rh5AG192800 Rh5AG365900 Rh5BG190400 Rh5BG376600 Rh5CG399600 Rh5DG192100 Rh5DG389500 Rh5DG389600 Rh7BG106200
rosa_wichuraiana	Rw5G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1076
AccB1I	GGYRCC	1 cut(s)	71
AccI	GTMKAC	1 cut(s)	924
AccII	CGCG	1 cut(s)	322
AciI	CCGC	1 cut(s)	1127
AclWI	GGATC	6 cut(s)	33, 202, 215, 468, 473, 486
AcsI	RAATTY	1 cut(s)	485
AcyI	GRCGYC	1 cut(s)	1073
AfaI	GTAC	2 cut(s)	301, 495
AfiI	CCNNNNNNNGG	2 cut(s)	195, 692
AflIII	ACRYGT	1 cut(s)	320
AgsI	TTSAA	7 cut(s)	194, 251, 531, 640, 862, 1094, 1152
AjiI	CACGTC	1 cut(s)	973
AjnI	CCWGG	1 cut(s)	670
AluBI	AGCT	7 cut(s)	109, 290, 447, 754, 812, 950, 978
AluI	AGCT	7 cut(s)	109, 290, 447, 754, 812, 950, 978
Alw21I	GWGCWC	1 cut(s)	980
Alw26I	GTCTC	4 cut(s)	113, 574, 889, 938
AlwI	GGATC	6 cut(s)	33, 202, 215, 468, 473, 486
Ama87I	CYCGRG	1 cut(s)	614
AoxI	GGCC	1 cut(s)	1143
ApeKI	GCWGC	1 cut(s)	290
ApoI	RAATTY	1 cut(s)	485
AspA2I	CCTAGG	1 cut(s)	653
AspLEI	GCGC	1 cut(s)	142
AspS9I	GGNCC	2 cut(s)	650, 683
AsuHPI	GGTGA	1 cut(s)	613
AvaI	CYCGRG	1 cut(s)	614
AvaII	GGWCC	2 cut(s)	650, 683
AvrII	CCTAGG	1 cut(s)	653
BamHI	GGATCC	2 cut(s)	207, 478
BanI	GGYRCC	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	980
BbsI	GAAGAC	1 cut(s)	1076
Bbv12I	GWGCWC	1 cut(s)	980
BbvCI	CCTCAGC	1 cut(s)	594
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	6 cut(s)	259, 652, 674, 755, 1046, 1053
BciT130I	CCWGG	1 cut(s)	672
BclI	TGATCA	1 cut(s)	258
BcoDI	GTCTC	4 cut(s)	113, 574, 889, 938
BfaI	CTAG	5 cut(s)	243, 287, 654, 687, 710
BfmI	CTRYAG	2 cut(s)	340, 438
BglII	AGATCT	1 cut(s)	271
BisI	GCNGC	1 cut(s)	291
BlnI	CCTAGG	1 cut(s)	653
BlsI	GCNGC	1 cut(s)	292
Bme1390I	CCNGG	1 cut(s)	672
Bme18I	GGWCC	2 cut(s)	650, 683
BmeT110I	CYCGRG	1 cut(s)	614
BmgBI	CACGTC	1 cut(s)	973
BmgT120I	GGNCC	2 cut(s)	650, 683
BmiI	GGNNCC	6 cut(s)	13, 73, 209, 480, 744, 1064
BmrFI	CCNGG	1 cut(s)	672
BmrI	ACTGGG	1 cut(s)	359
BmsI	GCATC	3 cut(s)	346, 528, 790
BmuI	ACTGGG	1 cut(s)	359
BoxI	GACNNNNGTC	1 cut(s)	920
BpiI	GAAGAC	1 cut(s)	1076
BpmI	CTGGAG	1 cut(s)	288
Bpu10I	CCTNAGC	1 cut(s)	594
BpuEI	CTTGAG	2 cut(s)	197, 734
BsaHI	GRCGYC	1 cut(s)	1073
BsaJI	CCNNGG	3 cut(s)	653, 670, 701
BsaXI	ACNNNNNCTCC	4 cut(s)	106, 136, 962, 992
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 692
Bse1I	ACTGG	4 cut(s)	211, 365, 647, 1157
BseBI	CCWGG	1 cut(s)	672
BseDI	CCNNGG	3 cut(s)	653, 670, 701
BseGI	GGATG	5 cut(s)	463, 663, 666, 766, 1064
BseLI	CCNNNNNNNGG	2 cut(s)	195, 692
BseMII	CTCAG	4 cut(s)	396, 585, 594, 909
BseNI	ACTGG	4 cut(s)	211, 365, 647, 1157
BseRI	GAGGAG	1 cut(s)	114
BseXI	GCAGC	1 cut(s)	277
Bsh1236I	CGCG	1 cut(s)	322
Bsh1285I	CGRYCG	1 cut(s)	969
BshFI	GGCC	1 cut(s)	1145
BshNI	GGYRCC	1 cut(s)	71
BsiEI	CGRYCG	1 cut(s)	969
BsiHKAI	GWGCWC	1 cut(s)	980
BsiHKCI	CYCGRG	1 cut(s)	614
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	2 cut(s)	683, 1097
BslI	CCNNNNNNNGG	2 cut(s)	195, 692
BsmAI	GTCTC	4 cut(s)	113, 574, 889, 938
BsmFI	GGGAC	2 cut(s)	683, 1097
BsnI	GGCC	1 cut(s)	1145
BsoBI	CYCGRG	1 cut(s)	614
Bsp1286I	GDGCHC	1 cut(s)	980
BspACI	CCGC	1 cut(s)	1127
BspANI	GGCC	1 cut(s)	1145
BspCNI	CTCAG	4 cut(s)	395, 586, 595, 910
BspFNI	CGCG	1 cut(s)	322
BspLI	GGNNCC	6 cut(s)	13, 73, 209, 480, 744, 1064
BspPI	GGATC	6 cut(s)	33, 202, 215, 468, 473, 486
BspT107I	GGYRCC	1 cut(s)	71
BsrI	ACTGG	4 cut(s)	211, 365, 647, 1157
BssECI	CCNNGG	3 cut(s)	653, 670, 701
BssNI	GRCGYC	1 cut(s)	1073
BssT1I	CCWWGG	1 cut(s)	653
Bst2UI	CCWGG	1 cut(s)	672
Bst4CI	ACNGT	4 cut(s)	35, 190, 892, 1049
BstACI	GRCGYC	1 cut(s)	1073
BstC8I	GCNNGC	1 cut(s)	715
BstDEI	CTNAG	5 cut(s)	382, 594, 603, 918, 1167
BstDSI	CCRYGG	1 cut(s)	701
BstF5I	GGATG	5 cut(s)	463, 663, 666, 766, 1064
BstFNI	CGCG	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	142
BstMAI	GTCTC	4 cut(s)	113, 574, 889, 938
BstMCI	CGRYCG	1 cut(s)	969
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 599, 742, 751, 809
BstNI	CCWGG	1 cut(s)	672
BstPAI	GACNNNNGTC	1 cut(s)	920
BstSCI	CCNGG	1 cut(s)	670
BstSFI	CTRYAG	2 cut(s)	340, 438
BstUI	CGCG	1 cut(s)	322
BstV1I	GCAGC	1 cut(s)	277
BstV2I	GAAGAC	1 cut(s)	1076
BstX2I	RGATCY	4 cut(s)	25, 207, 271, 478
BstXI	CCANNNNNNTGG	1 cut(s)	642
BstYI	RGATCY	4 cut(s)	25, 207, 271, 478
BsuRI	GGCC	1 cut(s)	1145
BtgI	CCRYGG	1 cut(s)	701
BtrI	CACGTC	1 cut(s)	973
BtsCI	GGATG	5 cut(s)	463, 663, 666, 766, 1064
BtsIMutI	CAGTG	2 cut(s)	372, 897
Cac8I	GCNNGC	1 cut(s)	715
CfoI	GCGC	1 cut(s)	142
Cfr13I	GGNCC	2 cut(s)	650, 683
CseI	GACGC	3 cut(s)	311, 386, 461
Csp6I	GTAC	2 cut(s)	300, 494
CspCI	CAANNNNNGTGG	2 cut(s)	919, 954
CviAII	CATG	3 cut(s)	64, 236, 1033
CviQI	GTAC	2 cut(s)	300, 494
DdeI	CTNAG	5 cut(s)	382, 594, 603, 918, 1167
Ecl136II	GAGCTC	1 cut(s)	978
Eco130I	CCWWGG	1 cut(s)	653
Eco24I	GRGCYC	1 cut(s)	980
Eco47I	GGWCC	2 cut(s)	650, 683
Eco53kI	GAGCTC	1 cut(s)	978
Eco88I	CYCGRG	1 cut(s)	614
EcoICRI	GAGCTC	1 cut(s)	978
EcoRII	CCWGG	1 cut(s)	670
EcoT14I	CCWWGG	1 cut(s)	653
EcoT22I	ATGCAT	1 cut(s)	65
EcoT38I	GRGCYC	1 cut(s)	980
ErhI	CCWWGG	1 cut(s)	653
FaeI	CATG	3 cut(s)	67, 239, 1036
FalI	AAGNNNNNCTT	2 cut(s)	801, 833
FaqI	GGGAC	2 cut(s)	683, 1097
FatI	CATG	3 cut(s)	63, 235, 1032
FauNDI	CATATG	1 cut(s)	553
FbaI	TGATCA	1 cut(s)	258
FblI	GTMKAC	1 cut(s)	924
Fnu4HI	GCNGC	1 cut(s)	291
FokI	GGATG	5 cut(s)	450, 653, 670, 773, 1071
FriOI	GRGCYC	1 cut(s)	980
Fsp4HI	GCNGC	1 cut(s)	291
FspBI	CTAG	5 cut(s)	243, 287, 654, 687, 710
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	1 cut(s)	291
GsuI	CTGGAG	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	1145
HapII	CCGG	1 cut(s)	75
HgaI	GACGC	3 cut(s)	311, 386, 461
HhaI	GCGC	1 cut(s)	142
Hin1I	GRCGYC	1 cut(s)	1073
Hin1II	CATG	3 cut(s)	67, 239, 1036
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HincII	GTYRAC	1 cut(s)	1052
HindII	GTYRAC	1 cut(s)	1052
HindIII	AAGCTT	3 cut(s)	107, 445, 752
HinfI	GANTC	8 cut(s)	121, 239, 403, 612, 770, 958, 1023, 1094
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	1 cut(s)	613
Hpy166II	GTNNAC	6 cut(s)	38, 151, 589, 621, 925, 1052
Hpy188I	TCNGA	4 cut(s)	207, 276, 385, 402
Hpy188III	TCNNGA	8 cut(s)	29, 243, 262, 329, 476, 482, 836, 955
Hpy8I	GTNNAC	6 cut(s)	38, 151, 589, 621, 925, 1052
Hpy99I	CGWCG	3 cut(s)	741, 974, 1078
HpyAV	CCTTC	4 cut(s)	245, 793, 992, 1135
HpyCH4III	ACNGT	4 cut(s)	35, 190, 892, 1049
HpyCH4IV	ACGT	2 cut(s)	972, 1073
HpyCH4V	TGCA	3 cut(s)	63, 519, 563
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 599, 742, 751, 809
HpyF3I	CTNAG	5 cut(s)	382, 594, 603, 918, 1167
HpySE526I	ACGT	2 cut(s)	972, 1073
Hsp92I	GRCGYC	1 cut(s)	1073
Hsp92II	CATG	3 cut(s)	67, 239, 1036
HspAI	GCGC	1 cut(s)	140
Ksp22I	TGATCA	1 cut(s)	258
LmnI	GCTCC	3 cut(s)	11, 742, 983
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	3 cut(s)	346, 528, 790
MaeI	CTAG	5 cut(s)	243, 287, 654, 687, 710
MaeII	ACGT	2 cut(s)	972, 1073
MaeIII	GTNAC	2 cut(s)	722, 886
MboII	GAAGA	5 cut(s)	443, 515, 722, 850, 1081
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	4 cut(s)	25, 207, 271, 478
MhlI	GDGCHC	1 cut(s)	980
MluCI	AATT	3 cut(s)	346, 485, 531
MluI	ACGCGT	1 cut(s)	320
MlyI	GAGTC	3 cut(s)	115, 606, 967
MmeI	TCCRAC	2 cut(s)	185, 986
MnlI	CCTC	9 cut(s)	71, 135, 336, 477, 537, 589, 685, 756, 913
Mph1103I	ATGCAT	1 cut(s)	65
MseI	TTAA	5 cut(s)	45, 231, 372, 1103, 1137
MslI	CAYNNNNRTG	1 cut(s)	99
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	672
MunI	CAATTG	1 cut(s)	531
MvaI	CCWGG	1 cut(s)	672
MvnI	CGCG	1 cut(s)	322
MwoI	GCNNNNNNNGC	5 cut(s)	11, 599, 742, 751, 809
NdeI	CATATG	1 cut(s)	553
NlaIII	CATG	3 cut(s)	67, 239, 1036
NlaIV	GGNNCC	6 cut(s)	13, 73, 209, 480, 744, 1064
NmuCI	GTSAC	1 cut(s)	886
NsiI	ATGCAT	1 cut(s)	65
PaeR7I	CTCGAG	1 cut(s)	614
PfeI	GAWTC	5 cut(s)	239, 403, 770, 1023, 1094
PkrI	GCNGC	1 cut(s)	292
Ple19I	CGATCG	1 cut(s)	969
PleI	GAGTC	3 cut(s)	115, 606, 966
PpsI	GAGTC	3 cut(s)	115, 606, 966
PshAI	GACNNNNGTC	1 cut(s)	920
Psp124BI	GAGCTC	1 cut(s)	980
Psp6I	CCWGG	1 cut(s)	670
PspGI	CCWGG	1 cut(s)	670
PspN4I	GGNNCC	6 cut(s)	13, 73, 209, 480, 744, 1064
PspPI	GGNCC	2 cut(s)	650, 683
PspXI	VCTCGAGB	1 cut(s)	614
PsuI	RGATCY	4 cut(s)	25, 207, 271, 478
PvuI	CGATCG	1 cut(s)	969
RsaI	GTAC	2 cut(s)	301, 495
RsaNI	GTAC	2 cut(s)	300, 494
RseI	CAYNNNNRTG	1 cut(s)	99
SacI	GAGCTC	1 cut(s)	980
SaqAI	TTAA	5 cut(s)	45, 231, 372, 1103, 1137
SatI	GCNGC	1 cut(s)	291
Sau96I	GGNCC	2 cut(s)	650, 683
SchI	GAGTC	3 cut(s)	115, 606, 967
ScrFI	CCNGG	1 cut(s)	672
SduI	GDGCHC	1 cut(s)	980
SfaNI	GCATC	3 cut(s)	346, 528, 790
SfcI	CTRYAG	2 cut(s)	340, 438
Sfr274I	CTCGAG	1 cut(s)	614
SinI	GGWCC	2 cut(s)	650, 683
SlaI	CTCGAG	1 cut(s)	614
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	3 cut(s)	176, 614, 749
SmoI	CTYRAG	3 cut(s)	176, 614, 749
Sse9I	AATT	3 cut(s)	346, 485, 531
SsiI	CCGC	1 cut(s)	1127
SspMI	CTAG	5 cut(s)	243, 287, 654, 687, 710
SstI	GAGCTC	1 cut(s)	980
StyD4I	CCNGG	1 cut(s)	670
StyI	CCWWGG	1 cut(s)	653
TaaI	ACNGT	4 cut(s)	35, 190, 892, 1049
TaiI	ACGT	2 cut(s)	975, 1076
TaqI	TCGA	6 cut(s)	615, 807, 828, 954, 969, 1097
TasI	AATT	3 cut(s)	346, 485, 531
TatI	WGTACW	2 cut(s)	299, 493
TfiI	GAWTC	5 cut(s)	239, 403, 770, 1023, 1094
Tru1I	TTAA	5 cut(s)	45, 231, 372, 1103, 1137
Tru9I	TTAA	5 cut(s)	45, 231, 372, 1103, 1137
TscAI	CASTG	2 cut(s)	372, 897
TseFI	GTSAC	1 cut(s)	886
TseI	GCWGC	1 cut(s)	290
Tsp45I	GTSAC	1 cut(s)	886
TspDTI	ATGAA	6 cut(s)	73, 206, 340, 655, 775, 897
TspGWI	ACGGA	2 cut(s)	24, 131
TspRI	CASTG	2 cut(s)	372, 897
VpaK11BI	GGWCC	2 cut(s)	650, 683
XapI	RAATTY	1 cut(s)	485
XbaI	TCTAGA	1 cut(s)	242
XhoI	CTCGAG	1 cut(s)	614
XmaJI	CCTAGG	1 cut(s)	653
XmiI	GTMKAC	1 cut(s)	924
XspI	CTAG	5 cut(s)	243, 287, 654, 687, 710
ZraI	GACGTC	1 cut(s)	1074
Zsp2I	ATGCAT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.