Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003128

Physical Location & Seq

Genomic Coordinates Reverse (-)

21415069 .. 21415493

Gene Structure 425 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG192100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCATGATTGGAGCAGGAGGGTTCATTGGGTCCCACTCTGCGAGAAGCTGATGGCGGAGACGCCGCACAAGATTCTAGCCCTAGACGTGTACAATGACAAGATCAAGCACCTGCTGGAGCCATCGGATGGTCATCCTTGGTCCGATCGCATCCAGTTCCACCGCCACAACATCAAGCACGACTTGCGCCTCGAAGGCCTCATCAAGACCTCAGATCTGACCATCAATCTCCCACGATCTGTACTCCGGCAGACTACAACAAGCACCCGCTGGACACTATCTACAGTAACTTCATCGGTGGCTATGGCGATGGGGAGGGAATTAGAGATGGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009987 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0036094 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048037 GO:0048040 GO:0048046 GO:0050662 GO:0051287 GO:0055086 GO:0071704 GO:0097159 GO:1901135 GO:1901137 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Epimerase

Protein Analysis

112

Amino Acids

13.13

Weight (kDa)

7.11

Isoelectric Point (pI)

49.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08200
fragaria_vesca	FvH4_3g30060 FvH4_3g30060 FvH4_3g30060 FvH4_3g30060
malus_domestica	MD03G1131500.v1.1 MD03G1131900.v1.1 MD03G1161900.v1.1 MD11G1154500.v1.1 MD11G1215900.v1.1 MD16G1216600.v1.1 MD16G1216800.v1.1
prunus_persica	Prupe.6G116900_v2.0.a1 Prupe.6G116900_v2.0.a1 Prupe.6G116900_v2.0.a1
pyrus_communis	pycom11g12600 pycom11g12610
rosa_chinensis	RchiOBHm_Chr5g0055821
rosa_laevigata	RLG00000002609 RLG00000035011
rosa_multiflora	Rmu_sc0003306.1_g000005 Rmu_sc0003500.1_g000032 Rmu_sc0003500.1_g000033 Rmu_sc0007802.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024520 Rroxscaffold_1G00052150
rosa_rugosa	Rorug05G0295000
rosa_samantha	Rh5AG192800 Rh5AG365900 Rh5BG190400 Rh5BG376600 Rh5CG399600 Rh5DG192100 Rh5DG389500 Rh5DG389600 Rh7BG106200
rosa_wichuraiana	Rw5G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	120
Acc36I	ACCTGC	1 cut(s)	120
AccB7I	CCANNNNNTGG	1 cut(s)	128
AciI	CCGC	4 cut(s)	56, 65, 163, 268
AcyI	GRCGYC	1 cut(s)	62
AfaI	GTAC	2 cut(s)	92, 243
AfiI	CCNNNNNNNGG	1 cut(s)	128
AflIII	ACRYGT	1 cut(s)	87
AjiI	CACGTC	1 cut(s)	88
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
Alw26I	GTCTC	1 cut(s)	53
AoxI	GGCC	1 cut(s)	196
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	2 cut(s)	31, 141
AvaII	GGWCC	2 cut(s)	31, 141
BccI	CCATC	6 cut(s)	46, 122, 130, 230, 304, 322
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	2 cut(s)	77, 83
BfmI	CTRYAG	1 cut(s)	282
BfuAI	ACCTGC	1 cut(s)	120
BglI	GCCNNNNNGGC	1 cut(s)	195
BglII	AGATCT	1 cut(s)	214
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
Bme18I	GGWCC	2 cut(s)	31, 141
BmgBI	CACGTC	1 cut(s)	88
BmgT120I	GGNCC	2 cut(s)	31, 141
BmiI	GGNNCC	3 cut(s)	32, 33, 120
BmsI	GCATC	1 cut(s)	159
BpmI	CTGGAG	1 cut(s)	137
BsaBI	GATNNNNATC	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	154
Bse8I	GATNNNNATC	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	3 cut(s)	133, 133, 150
BseJI	GATNNNNATC	1 cut(s)	132
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	1 cut(s)	154
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	1 cut(s)	198
BsiEI	CGRYCG	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	247
BslFI	GGGAC	1 cut(s)	17
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	53
BsmBI	CGTCTC	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	17
BsnI	GGCC	1 cut(s)	198
Bsp1407I	TGTACA	1 cut(s)	90
Bsp143I	GATC	4 cut(s)	102, 145, 214, 236
BspACI	CCGC	4 cut(s)	56, 65, 163, 268
BspANI	GGCC	1 cut(s)	198
BspCNI	CTCAG	1 cut(s)	224
BspLI	GGNNCC	3 cut(s)	32, 33, 120
BspMI	ACCTGC	1 cut(s)	120
BsrGI	TGTACA	1 cut(s)	90
BsrI	ACTGG	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	4 cut(s)	102, 145, 214, 236
BssNI	GRCGYC	1 cut(s)	62
BssT1I	CCWWGG	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	286
BstACI	GRCGYC	1 cut(s)	62
BstAPI	GCANNNNNTGC	1 cut(s)	184
BstAUI	TGTACA	1 cut(s)	90
BstDEI	CTNAG	1 cut(s)	211
BstF5I	GGATG	3 cut(s)	133, 133, 150
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	4 cut(s)	105, 148, 217, 239
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	4 cut(s)	102, 145, 214, 236
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	2 cut(s)	184, 195
BstSFI	CTRYAG	1 cut(s)	282
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BsuRI	GGCC	1 cut(s)	198
BtgZI	GCGATG	1 cut(s)	323
BtrI	CACGTC	1 cut(s)	88
BtsCI	GGATG	3 cut(s)	133, 133, 150
BveI	ACCTGC	1 cut(s)	120
CfoI	GCGC	1 cut(s)	189
Cfr13I	GGNCC	2 cut(s)	31, 141
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	2 cut(s)	91, 242
CviAII	CATG	1 cut(s)	5
CviJI	RGCY	5 cut(s)	49, 80, 121, 198, 302
CviKI_1	RGCY	5 cut(s)	49, 80, 121, 198, 302
CviQI	GTAC	2 cut(s)	91, 242
DdeI	CTNAG	1 cut(s)	211
DpnI	GATC	4 cut(s)	104, 147, 216, 238
DpnII	GATC	4 cut(s)	102, 145, 214, 236
EciI	GGCGGA	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	137
Eco147I	AGGCCT	1 cut(s)	198
Eco47I	GGWCC	2 cut(s)	31, 141
EcoO109I	RGGNCCY	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	137
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	137
Esp3I	CGTCTC	1 cut(s)	53
FaeI	CATG	1 cut(s)	8
FaiI	YATR	2 cut(s)	6, 305
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	1 cut(s)	17
FatI	CATG	1 cut(s)	4
FauI	CCCGC	1 cut(s)	275
Fnu4HI	GCNGC	1 cut(s)	65
FokI	GGATG	3 cut(s)	120, 137, 140
Fsp4HI	GCNGC	1 cut(s)	65
FspBI	CTAG	2 cut(s)	77, 83
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	1 cut(s)	65
GsuI	CTGGAG	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	198
HapII	CCGG	1 cut(s)	247
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	1 cut(s)	189
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	1 cut(s)	8
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HinfI	GANTC	1 cut(s)	73
HpaII	CCGG	1 cut(s)	247
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	4 cut(s)	127, 145, 214, 219
Hpy188III	TCNNGA	1 cut(s)	205
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	188
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	184, 195
HpyF3I	CTNAG	1 cut(s)	211
HpySE526I	ACGT	1 cut(s)	87
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	1 cut(s)	8
HspAI	GCGC	1 cut(s)	187
KflI	GGGWCCC	1 cut(s)	31
Kzo9I	GATC	4 cut(s)	102, 145, 214, 236
LmnI	GCTCC	2 cut(s)	12, 118
LpnPI	CCDG	5 cut(s)	101, 125, 167, 256, 260
LweI	GCATC	1 cut(s)	159
MaeI	CTAG	2 cut(s)	77, 83
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	4 cut(s)	104, 147, 216, 238
MboI	GATC	4 cut(s)	102, 145, 214, 236
MflI	RGATCY	1 cut(s)	214
MluCI	AATT	1 cut(s)	320
MnlI	CCTC	6 cut(s)	12, 200, 209, 220, 309, 325
Mph1103I	ATGCAT	1 cut(s)	6
MspA1I	CMGCKG	1 cut(s)	270
MspI	CCGG	1 cut(s)	247
MwoI	GCNNNNNNNGC	2 cut(s)	184, 195
NdeII	GATC	4 cut(s)	102, 145, 214, 236
NlaIII	CATG	1 cut(s)	8
NlaIV	GGNNCC	3 cut(s)	32, 33, 120
NsiI	ATGCAT	1 cut(s)	6
PaqCI	CACCTGC	1 cut(s)	120
PceI	AGGCCT	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	73
PflMI	CCANNNNNTGG	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	66
Ple19I	CGATCG	1 cut(s)	148
PpuMI	RGGWCCY	1 cut(s)	31
Psp5II	RGGWCCY	1 cut(s)	31
PspN4I	GGNNCC	3 cut(s)	32, 33, 120
PspPI	GGNCC	2 cut(s)	31, 141
PspPPI	RGGWCCY	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	214
PvuI	CGATCG	1 cut(s)	148
RsaI	GTAC	2 cut(s)	92, 243
RsaNI	GTAC	2 cut(s)	91, 242
SatI	GCNGC	1 cut(s)	65
Sau3AI	GATC	4 cut(s)	102, 145, 214, 236
Sau96I	GGNCC	2 cut(s)	31, 141
SetI	ASST	4 cut(s)	51, 90, 114, 212
SfaNI	GCATC	1 cut(s)	159
SfcI	CTRYAG	1 cut(s)	282
SinI	GGWCC	2 cut(s)	31, 141
Sse9I	AATT	1 cut(s)	320
SseBI	AGGCCT	1 cut(s)	198
SsiI	CCGC	4 cut(s)	56, 65, 163, 268
SspMI	CTAG	2 cut(s)	77, 83
StuI	AGGCCT	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	286
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	1 cut(s)	192
TasI	AATT	1 cut(s)	320
TatI	WGTACW	2 cut(s)	90, 241
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	1 cut(s)	73
TspDTI	ATGAA	2 cut(s)	14, 282
Van91I	CCANNNNNTGG	1 cut(s)	128
VpaK11BI	GGWCC	2 cut(s)	31, 141
XspI	CTAG	2 cut(s)	77, 83
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.