Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003128

Physical Location & Seq

Genomic Coordinates Reverse (-)

36911557 .. 36914969

Gene Structure 3413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002609

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGTGTCGGCGGCGGGGAGAATAGATCTGGACGGCAAGCCGATAAAGATATGCATAATCGGAGCCGGAGGGTTCATTGGGTCCCACCTCTGCGAGAAGCTGATGGCGGAGACGCCGCACAAGGTTCTAGCCCTAGACGTGTACAATGATAAGATCAAGCACCTGCTGGAGCCATCGGACGGTCATCCTTGGTCCGATCCCATCCAGTTCCACTGCCTCAACATCAAGCACGACTCGCGCCTCTCGAAGGCCTCATCAAGACCTCAGATTTGCGGTCAGTCTTCAAAGAAGAGGATCGTATTAGGGCTATCAGTCGTGAGGAGGCTGAGGATGCAGATAGCTGCCGGTGGTTCGCTAAGTTGTGAAACCCCCTCCAAGCCCCCCAAGGCTGTTGTGCAAGCCAAGGCGGCCAATGAGTCAGATTTGGAGCTTTGTGGTTGCTTTGGTGGAGCTGAAGATCAGGAGATTGCGCTGCAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009987 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0036094 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048037 GO:0048040 GO:0048046 GO:0050662 GO:0051287 GO:0055086 GO:0071704 GO:0097159 GO:1901135 GO:1901137 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Epimerase

Protein Analysis

161

Amino Acids

17.19

Weight (kDa)

8.7

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	17 - 86	1.5e-06	NAD dependent epimerase/dehydratase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08200
fragaria_vesca	FvH4_3g30060 FvH4_3g30060 FvH4_3g30060 FvH4_3g30060
malus_domestica	MD03G1131500.v1.1 MD03G1131900.v1.1 MD03G1161900.v1.1 MD11G1154500.v1.1 MD11G1215900.v1.1 MD16G1216600.v1.1 MD16G1216800.v1.1
prunus_persica	Prupe.6G116900_v2.0.a1 Prupe.6G116900_v2.0.a1 Prupe.6G116900_v2.0.a1
pyrus_communis	pycom11g12600 pycom11g12610
rosa_chinensis	RchiOBHm_Chr5g0055821
rosa_laevigata	RLG00000002609 RLG00000035011
rosa_multiflora	Rmu_sc0003306.1_g000005 Rmu_sc0003500.1_g000032 Rmu_sc0003500.1_g000033 Rmu_sc0007802.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024520 Rroxscaffold_1G00052150
rosa_rugosa	Rorug05G0295000
rosa_samantha	Rh5AG192800 Rh5AG365900 Rh5BG190400 Rh5BG376600 Rh5CG399600 Rh5DG192100 Rh5DG389500 Rh5DG389600 Rh7BG106200
rosa_wichuraiana	Rw5G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	171
Acc36I	ACCTGC	1 cut(s)	171
AccII	CGCG	1 cut(s)	238
AciI	CCGC	6 cut(s)	11, 14, 107, 116, 273, 407
AclWI	GGATC	2 cut(s)	191, 302
AcoI	YGGCCR	1 cut(s)	408
AcuI	CTGAAG	1 cut(s)	474
AcyI	GRCGYC	1 cut(s)	113
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	2 cut(s)	179, 247
AflIII	ACRYGT	1 cut(s)	138
AgsI	TTSAA	1 cut(s)	285
AjiI	CACGTC	1 cut(s)	139
AluBI	AGCT	4 cut(s)	100, 341, 430, 452
AluI	AGCT	4 cut(s)	100, 341, 430, 452
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	2 cut(s)	191, 302
AoxI	GGCC	2 cut(s)	249, 408
ApeKI	GCWGC	2 cut(s)	341, 472
ArsI	GACNNNNNNTTYG	2 cut(s)	252, 284
AspLEI	GCGC	2 cut(s)	240, 472
AspS9I	GGNCC	2 cut(s)	81, 192
AvaII	GGWCC	2 cut(s)	81, 192
BbsI	GAAGAC	1 cut(s)	273
BbvCI	CCTCAGC	1 cut(s)	326
BbvI	GCAGC	2 cut(s)	328, 459
BccI	CCATC	3 cut(s)	97, 181, 209
BceAI	ACGGC	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	2 cut(s)	128, 134
BfuAI	ACCTGC	1 cut(s)	171
BglI	GCCNNNNNGGC	1 cut(s)	407
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	5 cut(s)	12, 116, 342, 408, 473
BlsI	GCNGC	5 cut(s)	13, 117, 343, 409, 474
Bme18I	GGWCC	2 cut(s)	81, 192
BmgBI	CACGTC	1 cut(s)	139
BmgT120I	GGNCC	2 cut(s)	81, 192
BmiI	GGNNCC	4 cut(s)	64, 82, 83, 171
BmsI	GCATC	1 cut(s)	321
BpiI	GAAGAC	1 cut(s)	273
BpmI	CTGGAG	1 cut(s)	188
Bpu10I	CCTNAGC	1 cut(s)	326
BsaHI	GRCGYC	1 cut(s)	113
BsaJI	CCNNGG	3 cut(s)	188, 384, 402
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 247
Bse118I	RCCGGY	1 cut(s)	344
Bse1I	ACTGG	1 cut(s)	205
BseDI	CCNNGG	3 cut(s)	188, 384, 402
BseGI	GGATG	3 cut(s)	184, 201, 336
BseLI	CCNNNNNNNGG	2 cut(s)	179, 247
BseMII	CTCAG	2 cut(s)	278, 317
BseNI	ACTGG	1 cut(s)	205
BseRI	GAGGAG	1 cut(s)	334
BseXI	GCAGC	2 cut(s)	328, 459
Bsh1236I	CGCG	1 cut(s)	238
BshFI	GGCC	2 cut(s)	251, 410
BsiSI	CCGG	2 cut(s)	66, 345
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	2 cut(s)	179, 247
BsmAI	GTCTC	1 cut(s)	104
BsmBI	CGTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	67
BsnI	GGCC	2 cut(s)	251, 410
Bsp1407I	TGTACA	1 cut(s)	141
Bsp143I	GATC	5 cut(s)	25, 153, 196, 294, 457
BspACI	CCGC	6 cut(s)	11, 14, 107, 116, 273, 407
BspANI	GGCC	2 cut(s)	251, 410
BspCNI	CTCAG	2 cut(s)	277, 318
BspFNI	CGCG	1 cut(s)	238
BspLI	GGNNCC	4 cut(s)	64, 82, 83, 171
BspMI	ACCTGC	1 cut(s)	171
BspPI	GGATC	2 cut(s)	191, 302
BsrFI	RCCGGY	1 cut(s)	344
BsrGI	TGTACA	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	205
BssAI	RCCGGY	1 cut(s)	344
BssECI	CCNNGG	3 cut(s)	188, 384, 402
BssMI	GATC	5 cut(s)	25, 153, 196, 294, 457
BssNI	GRCGYC	1 cut(s)	113
BssT1I	CCWWGG	3 cut(s)	188, 384, 402
Bst4CI	ACNGT	1 cut(s)	182
Bst6I	CTCTTC	1 cut(s)	284
BstACI	GRCGYC	1 cut(s)	113
BstAUI	TGTACA	1 cut(s)	141
BstC8I	GCNNGC	2 cut(s)	38, 399
BstDEI	CTNAG	3 cut(s)	264, 326, 356
BstENI	CCTNNNNNAGG	1 cut(s)	245
BstF5I	GGATG	3 cut(s)	184, 201, 336
BstFNI	CGCG	1 cut(s)	238
BstHHI	GCGC	2 cut(s)	240, 472
BstKTI	GATC	5 cut(s)	28, 156, 199, 297, 460
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	5 cut(s)	25, 153, 196, 294, 457
BstMWI	GCNNNNNNNGC	3 cut(s)	235, 331, 407
BstUI	CGCG	1 cut(s)	238
BstV1I	GCAGC	2 cut(s)	328, 459
BstV2I	GAAGAC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	2 cut(s)	251, 410
BtrI	CACGTC	1 cut(s)	139
BtsCI	GGATG	3 cut(s)	184, 201, 336
BtsI	GCAGTG	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	211
BveI	ACCTGC	1 cut(s)	171
Cac8I	GCNNGC	2 cut(s)	38, 399
CfoI	GCGC	2 cut(s)	240, 472
Cfr10I	RCCGGY	1 cut(s)	344
Cfr13I	GGNCC	2 cut(s)	81, 192
CseI	GACGC	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	142
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	3 cut(s)	264, 326, 356
DpnI	GATC	5 cut(s)	27, 155, 198, 296, 459
DpnII	GATC	5 cut(s)	25, 153, 196, 294, 457
EaeI	YGGCCR	1 cut(s)	408
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
EciI	GGCGGA	1 cut(s)	122
Eco130I	CCWWGG	3 cut(s)	188, 384, 402
Eco147I	AGGCCT	1 cut(s)	251
Eco47I	GGWCC	2 cut(s)	81, 192
Eco57I	CTGAAG	1 cut(s)	474
EcoNI	CCTNNNNNAGG	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	81
EcoT14I	CCWWGG	3 cut(s)	188, 384, 402
EcoT22I	ATGCAT	1 cut(s)	56
ErhI	CCWWGG	3 cut(s)	188, 384, 402
Esp3I	CGTCTC	1 cut(s)	104
FaiI	YATR	2 cut(s)	52, 56
FaqI	GGGAC	1 cut(s)	67
FauI	CCCGC	1 cut(s)	7
Fnu4HI	GCNGC	5 cut(s)	12, 116, 342, 408, 473
FokI	GGATG	3 cut(s)	171, 188, 343
Fsp4HI	GCNGC	5 cut(s)	12, 116, 342, 408, 473
FspBI	CTAG	2 cut(s)	128, 134
GlaI	GCGC	2 cut(s)	239, 471
GluI	GCNGC	5 cut(s)	12, 116, 342, 408, 473
GsuI	CTGGAG	1 cut(s)	188
HaeIII	GGCC	2 cut(s)	251, 410
HapII	CCGG	2 cut(s)	66, 345
HgaI	GACGC	1 cut(s)	121
HhaI	GCGC	2 cut(s)	240, 472
Hin1I	GRCGYC	1 cut(s)	113
Hin6I	GCGC	2 cut(s)	238, 470
HinP1I	GCGC	2 cut(s)	238, 470
HinfI	GANTC	2 cut(s)	233, 416
HpaII	CCGG	2 cut(s)	66, 345
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	5 cut(s)	62, 178, 196, 267, 421
Hpy188III	TCNNGA	5 cut(s)	29, 244, 258, 316, 461
Hpy8I	GTNNAC	1 cut(s)	142
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	4 cut(s)	54, 334, 397, 475
HpyF10VI	GCNNNNNNNGC	3 cut(s)	235, 331, 407
HpyF3I	CTNAG	3 cut(s)	264, 326, 356
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	1 cut(s)	113
HspAI	GCGC	2 cut(s)	238, 470
KflI	GGGWCCC	1 cut(s)	81
Kzo9I	GATC	5 cut(s)	25, 153, 196, 294, 457
LmnI	GCTCC	4 cut(s)	62, 169, 427, 449
LpnPI	CCDG	7 cut(s)	14, 79, 152, 176, 218, 358, 446
Lsp1109I	GCAGC	2 cut(s)	328, 459
LweI	GCATC	1 cut(s)	321
MaeI	CTAG	2 cut(s)	128, 134
MaeII	ACGT	1 cut(s)	138
MalI	GATC	5 cut(s)	27, 155, 198, 296, 459
MboI	GATC	5 cut(s)	25, 153, 196, 294, 457
MboII	GAAGA	3 cut(s)	273, 301, 467
MflI	RGATCY	1 cut(s)	25
MlyI	GAGTC	2 cut(s)	227, 425
Mph1103I	ATGCAT	1 cut(s)	56
MspI	CCGG	2 cut(s)	66, 345
MvnI	CGCG	1 cut(s)	238
MwoI	GCNNNNNNNGC	3 cut(s)	235, 331, 407
NdeII	GATC	5 cut(s)	25, 153, 196, 294, 457
NlaIV	GGNNCC	4 cut(s)	64, 82, 83, 171
NsiI	ATGCAT	1 cut(s)	56
PaqCI	CACCTGC	1 cut(s)	171
PceI	AGGCCT	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	1 cut(s)	242
PkrI	GCNGC	5 cut(s)	13, 117, 343, 409, 474
PleI	GAGTC	2 cut(s)	227, 424
PpsI	GAGTC	2 cut(s)	227, 424
PpuMI	RGGWCCY	1 cut(s)	81
Psp5II	RGGWCCY	1 cut(s)	81
PspN4I	GGNNCC	4 cut(s)	64, 82, 83, 171
PspPI	GGNCC	2 cut(s)	81, 192
PspPPI	RGGWCCY	1 cut(s)	81
PsuI	RGATCY	1 cut(s)	25
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SatI	GCNGC	5 cut(s)	12, 116, 342, 408, 473
Sau3AI	GATC	5 cut(s)	25, 153, 196, 294, 457
Sau96I	GGNCC	2 cut(s)	81, 192
SchI	GAGTC	2 cut(s)	227, 425
SetI	ASST	9 cut(s)	90, 102, 126, 141, 165, 265, 343, 432, 454
SfaNI	GCATC	1 cut(s)	321
SinI	GGWCC	2 cut(s)	81, 192
SseBI	AGGCCT	1 cut(s)	251
SsiI	CCGC	6 cut(s)	11, 14, 107, 116, 273, 407
SspMI	CTAG	2 cut(s)	128, 134
StuI	AGGCCT	1 cut(s)	251
StyI	CCWWGG	3 cut(s)	188, 384, 402
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	1 cut(s)	245
TatI	WGTACW	1 cut(s)	141
TauI	GCSGC	3 cut(s)	14, 118, 410
TscAI	CASTG	1 cut(s)	218
TseI	GCWGC	2 cut(s)	341, 472
TspDTI	ATGAA	1 cut(s)	64
TspRI	CASTG	1 cut(s)	218
VpaK11BI	GGWCC	2 cut(s)	81, 192
XagI	CCTNNNNNAGG	1 cut(s)	245
XspI	CTAG	2 cut(s)	128, 134
Zsp2I	ATGCAT	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.