Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003500.1

Orthogroup ID

OG0003128

Physical Location & Seq

Genomic Coordinates Reverse (-)

131768 .. 132295

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003500.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atggcgtcggcagcgggtagagtagatctggacggcaagcagataaagcagaggacgatatgcatgatcggagtcggagggttcattgggtcccacctctgcgagaagctgatggcggagacgccgcacaagattctagccctagacgtgtacaatgaagcacttgctggagccaccatcaatctccccgcgatctgtactccggcagactacaacacgctcccgctggacactatctacagtaacttcatcagtggctatggcgatggggaaggaattagagatggaggaatgagaggcggagttgatgacttcaatgtcgtcctcgtcaatgacgtcgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009987 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0036094 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048037 GO:0048040 GO:0050662 GO:0051287 GO:0055086 GO:0071704 GO:0097159 GO:1901135 GO:1901137 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Epimerase

Protein Analysis

114

Amino Acids

12.03

Weight (kDa)

4.58

Isoelectric Point (pI)

18.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08200
fragaria_vesca	FvH4_3g30060 FvH4_3g30060 FvH4_3g30060 FvH4_3g30060
malus_domestica	MD03G1131500.v1.1 MD03G1131900.v1.1 MD03G1161900.v1.1 MD11G1154500.v1.1 MD11G1215900.v1.1 MD16G1216600.v1.1 MD16G1216800.v1.1
prunus_persica	Prupe.6G116900_v2.0.a1 Prupe.6G116900_v2.0.a1 Prupe.6G116900_v2.0.a1
pyrus_communis	pycom11g12600 pycom11g12610
rosa_chinensis	RchiOBHm_Chr5g0055821
rosa_laevigata	RLG00000002609 RLG00000035011
rosa_multiflora	Rmu_sc0003306.1_g000005 Rmu_sc0003500.1_g000032 Rmu_sc0003500.1_g000033 Rmu_sc0007802.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024520 Rroxscaffold_1G00052150
rosa_rugosa	Rorug05G0295000
rosa_samantha	Rh5AG192800 Rh5AG365900 Rh5BG190400 Rh5BG376600 Rh5CG399600 Rh5DG192100 Rh5DG389500 Rh5DG389600 Rh7BG106200
rosa_wichuraiana	Rw5G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	317
AatII	GACGTC	1 cut(s)	339
AccII	CGCG	1 cut(s)	191
AciI	CCGC	6 cut(s)	14, 116, 125, 189, 224, 300
AcyI	GRCGYC	3 cut(s)	5, 122, 336
AfaI	GTAC	2 cut(s)	152, 199
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	1 cut(s)	316
AjiI	CACGTC	1 cut(s)	148
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
Alw26I	GTCTC	1 cut(s)	113
ApeKI	GCWGC	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	90
AvaII	GGWCC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	4 cut(s)	106, 185, 260, 278
BceAI	ACGGC	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	3 cut(s)	137, 143, 343
BfmI	CTRYAG	1 cut(s)	238
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	2 cut(s)	12, 125
BlsI	GCNGC	2 cut(s)	13, 126
Bme18I	GGWCC	1 cut(s)	90
BmgBI	CACGTC	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	90
BmiI	GGNNCC	3 cut(s)	91, 92, 172
BpmI	CTGGAG	1 cut(s)	189
BsaHI	GRCGYC	3 cut(s)	5, 122, 336
BseXI	GCAGC	1 cut(s)	23
Bsh1236I	CGCG	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	203
BslFI	GGGAC	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	113
BsmBI	CGTCTC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	76
Bsp1407I	TGTACA	1 cut(s)	150
Bsp143I	GATC	3 cut(s)	25, 66, 192
BspACI	CCGC	6 cut(s)	14, 116, 125, 189, 224, 300
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	3 cut(s)	91, 92, 172
BsrGI	TGTACA	1 cut(s)	150
BssMI	GATC	3 cut(s)	25, 66, 192
BssNI	GRCGYC	3 cut(s)	5, 122, 336
Bst4CI	ACNGT	1 cut(s)	242
BstACI	GRCGYC	3 cut(s)	5, 122, 336
BstAUI	TGTACA	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	38
BstFNI	CGCG	1 cut(s)	191
BstKTI	GATC	3 cut(s)	28, 69, 195
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	3 cut(s)	25, 66, 192
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 46
BstSFI	CTRYAG	1 cut(s)	238
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BtgZI	GCGATG	1 cut(s)	279
BtrI	CACGTC	1 cut(s)	148
BtsIMutI	CAGTG	1 cut(s)	259
Cac8I	GCNNGC	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	90
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	2 cut(s)	151, 198
CviAII	CATG	1 cut(s)	64
CviJI	RGCY	4 cut(s)	109, 140, 173, 258
CviKI_1	RGCY	4 cut(s)	109, 140, 173, 258
CviQI	GTAC	2 cut(s)	151, 198
DpnI	GATC	3 cut(s)	27, 68, 194
DpnII	GATC	3 cut(s)	25, 66, 192
DrdI	GACNNNNNNGTC	1 cut(s)	317
DseDI	GACNNNNNNGTC	1 cut(s)	317
EciI	GGCGGA	2 cut(s)	131, 315
Eco47I	GGWCC	1 cut(s)	90
EcoO109I	RGGNCCY	1 cut(s)	90
EcoT22I	ATGCAT	1 cut(s)	65
Esp3I	CGTCTC	1 cut(s)	113
FaeI	CATG	1 cut(s)	67
FaiI	YATR	3 cut(s)	61, 65, 261
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	1 cut(s)	63
FauI	CCCGC	3 cut(s)	7, 196, 231
Fnu4HI	GCNGC	2 cut(s)	12, 125
Fsp4HI	GCNGC	2 cut(s)	12, 125
FspBI	CTAG	3 cut(s)	137, 143, 343
GluI	GCNGC	2 cut(s)	12, 125
GsuI	CTGGAG	1 cut(s)	189
HapII	CCGG	1 cut(s)	203
HgaI	GACGC	1 cut(s)	130
Hin1I	GRCGYC	3 cut(s)	5, 122, 336
Hin1II	CATG	1 cut(s)	67
HinfI	GANTC	2 cut(s)	72, 133
HpaII	CCGG	1 cut(s)	203
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	2 cut(s)	71, 77
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	1 cut(s)	151
Hpy99I	CGWCG	2 cut(s)	10, 341
HpyAV	CCTTC	1 cut(s)	266
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4IV	ACGT	2 cut(s)	147, 336
HpyCH4V	TGCA	1 cut(s)	63
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 46
HpySE526I	ACGT	2 cut(s)	147, 336
Hsp92I	GRCGYC	3 cut(s)	5, 122, 336
Hsp92II	CATG	1 cut(s)	67
KflI	GGGWCCC	1 cut(s)	90
Kzo9I	GATC	3 cut(s)	25, 66, 192
LmnI	GCTCC	2 cut(s)	170, 225
LpnPI	CCDG	4 cut(s)	14, 153, 212, 216
Lsp1109I	GCAGC	1 cut(s)	23
MaeI	CTAG	3 cut(s)	137, 143, 343
MaeII	ACGT	2 cut(s)	147, 336
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	3 cut(s)	27, 68, 194
MboI	GATC	3 cut(s)	25, 66, 192
MflI	RGATCY	1 cut(s)	25
MluCI	AATT	1 cut(s)	276
MlyI	GAGTC	1 cut(s)	81
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	6 cut(s)	45, 71, 107, 281, 290, 335
Mph1103I	ATGCAT	1 cut(s)	65
MspA1I	CMGCKG	2 cut(s)	14, 226
MspI	CCGG	1 cut(s)	203
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	2 cut(s)	11, 46
NdeII	GATC	3 cut(s)	25, 66, 192
NlaIII	CATG	1 cut(s)	67
NlaIV	GGNNCC	3 cut(s)	91, 92, 172
NsiI	ATGCAT	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	133
PflFI	GACNNNGTC	1 cut(s)	338
PkrI	GCNGC	2 cut(s)	13, 126
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
PpuMI	RGGWCCY	1 cut(s)	90
Psp5II	RGGWCCY	1 cut(s)	90
PspN4I	GGNNCC	3 cut(s)	91, 92, 172
PspPI	GGNCC	1 cut(s)	90
PspPPI	RGGWCCY	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	25
PsyI	GACNNNGTC	1 cut(s)	338
RsaI	GTAC	2 cut(s)	152, 199
RsaNI	GTAC	2 cut(s)	151, 198
SatI	GCNGC	2 cut(s)	12, 125
Sau3AI	GATC	3 cut(s)	25, 66, 192
Sau96I	GGNCC	1 cut(s)	90
SchI	GAGTC	1 cut(s)	81
SetI	ASST	4 cut(s)	99, 111, 150, 339
SfcI	CTRYAG	1 cut(s)	238
SinI	GGWCC	1 cut(s)	90
Sse9I	AATT	1 cut(s)	276
SsiI	CCGC	6 cut(s)	14, 116, 125, 189, 224, 300
SspMI	CTAG	3 cut(s)	137, 143, 343
TaaI	ACNGT	1 cut(s)	242
TaiI	ACGT	2 cut(s)	150, 339
TasI	AATT	1 cut(s)	276
TatI	WGTACW	2 cut(s)	150, 197
TauI	GCSGC	1 cut(s)	127
TfiI	GAWTC	1 cut(s)	133
TscAI	CASTG	1 cut(s)	259
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	3 cut(s)	73, 171, 238
TspRI	CASTG	1 cut(s)	259
Tth111I	GACNNNGTC	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	90
XspI	CTAG	3 cut(s)	137, 143, 343
ZraI	GACGTC	1 cut(s)	337
Zsp2I	ATGCAT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.