Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007802.1

Orthogroup ID

OG0003128

Physical Location & Seq

Genomic Coordinates Reverse (-)

26874 .. 27247

Gene Structure 374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007802.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atgaagcacttgctggagccgtcagacggtaatccttggtccgatcgcatccagttccaccacttaaacatcaagtacgactcgcgcctcgaaggcctcatcaagacctcagatctgaccatcaatctcctcgcgatctgtactccggcagactacaacatgcacttcctggacattatctacagtaactttatcggtggctatggcgatggggaaggaattagagatggaggaatgagaggcggagttgatgacttcaatgtcgtcctcgtcaatgacgtcgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009987 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0036094 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048037 GO:0048040 GO:0048046 GO:0050662 GO:0051287 GO:0055086 GO:0071704 GO:0097159 GO:1901135 GO:1901137 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Epimerase

Protein Analysis

95

Amino Acids

10.62

Weight (kDa)

4.69

Isoelectric Point (pI)

24.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08200
fragaria_vesca	FvH4_3g30060 FvH4_3g30060 FvH4_3g30060 FvH4_3g30060
malus_domestica	MD03G1131500.v1.1 MD03G1131900.v1.1 MD03G1161900.v1.1 MD11G1154500.v1.1 MD11G1215900.v1.1 MD16G1216600.v1.1 MD16G1216800.v1.1
prunus_persica	Prupe.6G116900_v2.0.a1 Prupe.6G116900_v2.0.a1 Prupe.6G116900_v2.0.a1
pyrus_communis	pycom11g12600 pycom11g12610
rosa_chinensis	RchiOBHm_Chr5g0055821
rosa_laevigata	RLG00000002609 RLG00000035011
rosa_multiflora	Rmu_sc0003306.1_g000005 Rmu_sc0003500.1_g000032 Rmu_sc0003500.1_g000033 Rmu_sc0007802.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024520 Rroxscaffold_1G00052150
rosa_rugosa	Rorug05G0295000
rosa_samantha	Rh5AG192800 Rh5AG365900 Rh5BG190400 Rh5BG376600 Rh5CG399600 Rh5DG192100 Rh5DG389500 Rh5DG389600 Rh7BG106200
rosa_wichuraiana	Rw5G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
AatII	GACGTC	1 cut(s)	282
AccII	CGCG	2 cut(s)	85, 134
AciI	CCGC	1 cut(s)	243
AcyI	GRCGYC	1 cut(s)	279
AfaI	GTAC	2 cut(s)	77, 142
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	259
AjnI	CCWGG	1 cut(s)	168
AoxI	GGCC	1 cut(s)	94
AspLEI	GCGC	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	39
BccI	CCATC	3 cut(s)	128, 203, 221
BceAI	ACGGC	1 cut(s)	4
BciT130I	CCWGG	1 cut(s)	170
BfaI	CTAG	1 cut(s)	286
BfmI	CTRYAG	1 cut(s)	181
BglI	GCCNNNNNGGC	1 cut(s)	93
BglII	AGATCT	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	170
Bme18I	GGWCC	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	39
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	170
BmsI	GCATC	1 cut(s)	57
BpmI	CTGGAG	1 cut(s)	35
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	52
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	35
BseGI	GGATG	1 cut(s)	48
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	52
BseRI	GAGGAG	1 cut(s)	119
Bsh1236I	CGCG	2 cut(s)	85, 134
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	1 cut(s)	96
BsiEI	CGRYCG	1 cut(s)	46
BsiSI	CCGG	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	26
BsnI	GGCC	1 cut(s)	96
Bsp143I	GATC	3 cut(s)	43, 112, 135
Bsp68I	TCGCGA	1 cut(s)	134
BspACI	CCGC	1 cut(s)	243
BspANI	GGCC	1 cut(s)	96
BspCNI	CTCAG	1 cut(s)	122
BspFNI	CGCG	2 cut(s)	85, 134
BspLI	GGNNCC	1 cut(s)	18
BsrI	ACTGG	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	35
BssMI	GATC	3 cut(s)	43, 112, 135
BssNI	GRCGYC	1 cut(s)	279
BssT1I	CCWWGG	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	2 cut(s)	29, 185
BstACI	GRCGYC	1 cut(s)	279
BstDEI	CTNAG	1 cut(s)	109
BstF5I	GGATG	1 cut(s)	48
BstFNI	CGCG	2 cut(s)	85, 134
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	3 cut(s)	46, 115, 138
BstMBI	GATC	3 cut(s)	43, 112, 135
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	1 cut(s)	93
BstNI	CCWGG	1 cut(s)	170
BstNSI	RCATGY	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	168
BstSFI	CTRYAG	1 cut(s)	181
BstUI	CGCG	2 cut(s)	85, 134
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	96
BtgZI	GCGATG	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	48
BtuMI	TCGCGA	1 cut(s)	134
CfoI	GCGC	1 cut(s)	87
Cfr13I	GGNCC	1 cut(s)	39
Csp6I	GTAC	2 cut(s)	76, 141
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	3 cut(s)	19, 96, 201
CviKI_1	RGCY	3 cut(s)	19, 96, 201
CviQI	GTAC	2 cut(s)	76, 141
DdeI	CTNAG	1 cut(s)	109
DpnI	GATC	3 cut(s)	45, 114, 137
DpnII	GATC	3 cut(s)	43, 112, 135
DrdI	GACNNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	260
EciI	GGCGGA	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	35
Eco147I	AGGCCT	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	1 cut(s)	163
FaiI	YATR	2 cut(s)	161, 204
FatI	CATG	1 cut(s)	159
FokI	GGATG	1 cut(s)	35
FspBI	CTAG	1 cut(s)	286
GlaI	GCGC	1 cut(s)	86
GsuI	CTGGAG	1 cut(s)	35
HaeIII	GGCC	1 cut(s)	96
HapII	CCGG	1 cut(s)	146
HhaI	GCGC	1 cut(s)	87
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	1 cut(s)	163
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HinfI	GANTC	1 cut(s)	80
HpaII	CCGG	1 cut(s)	146
Hpy188I	TCNGA	4 cut(s)	25, 43, 112, 117
Hpy188III	TCNNGA	2 cut(s)	103, 133
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	2 cut(s)	86, 209
HpyCH4III	ACNGT	2 cut(s)	29, 185
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	1 cut(s)	163
HpyF10VI	GCNNNNNNNGC	1 cut(s)	93
HpyF3I	CTNAG	1 cut(s)	109
HpySE526I	ACGT	1 cut(s)	279
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	1 cut(s)	163
HspAI	GCGC	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	43, 112, 135
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	4 cut(s)	65, 155, 159, 182
LweI	GCATC	1 cut(s)	57
MaeI	CTAG	1 cut(s)	286
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	3 cut(s)	45, 114, 137
MboI	GATC	3 cut(s)	43, 112, 135
MflI	RGATCY	1 cut(s)	112
MluCI	AATT	1 cut(s)	219
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	7 cut(s)	98, 107, 118, 140, 224, 233, 278
MseI	TTAA	1 cut(s)	65
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	170
MvnI	CGCG	2 cut(s)	85, 134
MwoI	GCNNNNNNNGC	1 cut(s)	93
NdeII	GATC	3 cut(s)	43, 112, 135
NlaIII	CATG	1 cut(s)	163
NlaIV	GGNNCC	1 cut(s)	18
NruI	TCGCGA	1 cut(s)	134
NspI	RCATGY	1 cut(s)	163
PceI	AGGCCT	1 cut(s)	96
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PflFI	GACNNNGTC	1 cut(s)	281
PfoI	TCCNGGA	1 cut(s)	168
Ple19I	CGATCG	1 cut(s)	46
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	39
PsuI	RGATCY	1 cut(s)	112
PsyI	GACNNNGTC	1 cut(s)	281
PvuI	CGATCG	1 cut(s)	46
RruI	TCGCGA	1 cut(s)	134
RsaI	GTAC	2 cut(s)	77, 142
RsaNI	GTAC	2 cut(s)	76, 141
SaqAI	TTAA	1 cut(s)	65
Sau3AI	GATC	3 cut(s)	43, 112, 135
Sau96I	GGNCC	1 cut(s)	39
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	170
SetI	ASST	2 cut(s)	110, 282
SfaNI	GCATC	1 cut(s)	57
SfcI	CTRYAG	1 cut(s)	181
SinI	GGWCC	1 cut(s)	39
Sse9I	AATT	1 cut(s)	219
SseBI	AGGCCT	1 cut(s)	96
SsiI	CCGC	1 cut(s)	243
SspMI	CTAG	1 cut(s)	286
StuI	AGGCCT	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	168
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	2 cut(s)	29, 185
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	1 cut(s)	90
TasI	AATT	1 cut(s)	219
TatI	WGTACW	1 cut(s)	140
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	39
XceI	RCATGY	1 cut(s)	163
XspI	CTAG	1 cut(s)	286
ZraI	GACGTC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.