Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0003128

Physical Location & Seq

Genomic Coordinates Forward (+)

13011991 .. 13013189

Gene Structure 1199 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1131900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAAGTTTGTTGATTTTGGTAACGACAAACCTTACTTCTTGCGTGCTATATGGTCCTATGCATGTGCAAAGCAATTGATCGAGAGGCTGATCTATGCTGAGGGTGCGGAAAATGGTCTTGAATTTACCATTGTGAGACCCTTTAACTGGATTGGATCTAGGATAGATTTCATTCCTAGCATCGACGGCCCAAGTGAGGGTGTTCCAAGAGTTCTTGCATGCTTCAGTAATAATCTTCTTCTCCATGAGCTTCTCAAGCTCGTAGATGGCGGCCAATCTCAGAGAACTTTTGCTATTGAAGCTGTTATGTTGATGATCGTAATATGCAAAAGTTGTTGCTCAGTGATCTGTTTTCCTCGGGAAAATCCTGCTAGGGCCAATGGTCACATCTTCAATGTAGGCAACCCTAACAATGAAGTAACCGTTAGGCAGCTTGGTGAAATGATGACTGAGGTTTATGCGAAAGCAAGTTGGAATCCAAAGACCTCTCTCTGGGACTTGCTTGAATCAACCCTCACCTATCAGCATAGGACGTATGCCGAGGCTGTGAAGAAGGCTATTTCCCAATCATCTGCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009987 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0036094 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048037 GO:0048040 GO:0048046 GO:0050662 GO:0051287 GO:0055086 GO:0071704 GO:0097159 GO:1901135 GO:1901137 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Epimerase

Protein Analysis

194

Amino Acids

21.67

Weight (kDa)

6.82

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	12 - 97	3.3e-09	NAD dependent epimerase/dehydratase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08200
fragaria_vesca	FvH4_3g30060 FvH4_3g30060 FvH4_3g30060 FvH4_3g30060
malus_domestica	MD03G1131500.v1.1 MD03G1131900.v1.1 MD03G1161900.v1.1 MD11G1154500.v1.1 MD11G1215900.v1.1 MD16G1216600.v1.1 MD16G1216800.v1.1
prunus_persica	Prupe.6G116900_v2.0.a1 Prupe.6G116900_v2.0.a1 Prupe.6G116900_v2.0.a1
pyrus_communis	pycom11g12600 pycom11g12610
rosa_chinensis	RchiOBHm_Chr5g0055821
rosa_laevigata	RLG00000002609 RLG00000035011
rosa_multiflora	Rmu_sc0003306.1_g000005 Rmu_sc0003500.1_g000032 Rmu_sc0003500.1_g000033 Rmu_sc0007802.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024520 Rroxscaffold_1G00052150
rosa_rugosa	Rorug05G0295000
rosa_samantha	Rh5AG192800 Rh5AG365900 Rh5BG190400 Rh5BG376600 Rh5CG399600 Rh5DG192100 Rh5DG389500 Rh5DG389600 Rh7BG106200
rosa_wichuraiana	Rw5G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	107, 270
AclWI	GGATC	1 cut(s)	163
AcoI	YGGCCR	1 cut(s)	271
AcsI	RAATTY	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	208
AfiI	CCNNNNNNNGG	4 cut(s)	147, 196, 197, 492
AgsI	TTSAA	4 cut(s)	122, 299, 394, 506
AluBI	AGCT	5 cut(s)	250, 259, 302, 433, 579
AluI	AGCT	5 cut(s)	250, 259, 302, 433, 579
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	1 cut(s)	163
Ama87I	CYCGRG	1 cut(s)	357
AoxI	GGCC	3 cut(s)	187, 271, 375
ApeKI	GCWGC	1 cut(s)	430
ApoI	RAATTY	1 cut(s)	122
AspS9I	GGNCC	3 cut(s)	54, 188, 375
AsuHPI	GGTGA	2 cut(s)	449, 508
AvaI	CYCGRG	1 cut(s)	357
AvaII	GGWCC	1 cut(s)	54
BbvCI	CCTCAGC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	442
BccI	CCATC	1 cut(s)	260
BceAI	ACGGC	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	3 cut(s)	159, 177, 372
BisI	GCNGC	2 cut(s)	271, 431
BlsI	GCNGC	2 cut(s)	272, 432
Bme18I	GGWCC	1 cut(s)	54
BmeT110I	CYCGRG	1 cut(s)	357
BmgT120I	GGNCC	3 cut(s)	54, 188, 375
BmsI	GCATC	1 cut(s)	189
Bpu10I	CCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	130
BsaJI	CCNNGG	2 cut(s)	356, 540
Bsc4I	CCNNNNNNNGG	4 cut(s)	147, 196, 197, 492
Bse1I	ACTGG	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	356, 540
BseLI	CCNNNNNNNGG	4 cut(s)	147, 196, 197, 492
BseMII	CTCAG	4 cut(s)	90, 293, 354, 441
BseNI	ACTGG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	442
BshFI	GGCC	3 cut(s)	189, 273, 377
BsiHKCI	CYCGRG	1 cut(s)	357
BslFI	GGGAC	1 cut(s)	509
BslI	CCNNNNNNNGG	4 cut(s)	147, 196, 197, 492
BsmAI	GTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	509
BsnI	GGCC	3 cut(s)	189, 273, 377
Bso31I	GGTCTC	1 cut(s)	130
BsoBI	CYCGRG	1 cut(s)	357
Bsp143I	GATC	5 cut(s)	78, 90, 155, 315, 345
BspACI	CCGC	2 cut(s)	107, 270
BspANI	GGCC	3 cut(s)	189, 273, 377
BspCNI	CTCAG	4 cut(s)	91, 292, 353, 442
BspPI	GGATC	1 cut(s)	163
BspTNI	GGTCTC	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	152
BssECI	CCNNGG	2 cut(s)	356, 540
BssMI	GATC	5 cut(s)	78, 90, 155, 315, 345
Bst4CI	ACNGT	1 cut(s)	424
BstC8I	GCNNGC	3 cut(s)	45, 220, 577
BstDEI	CTNAG	4 cut(s)	99, 279, 340, 450
BstKTI	GATC	5 cut(s)	81, 93, 158, 318, 348
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	5 cut(s)	78, 90, 155, 315, 345
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 186, 256, 299
BstNSI	RCATGY	2 cut(s)	66, 222
BstV1I	GCAGC	1 cut(s)	442
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
BsuRI	GGCC	3 cut(s)	189, 273, 377
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	3 cut(s)	45, 220, 577
Cfr13I	GGNCC	3 cut(s)	54, 188, 375
CviAII	CATG	3 cut(s)	63, 219, 245
DdeI	CTNAG	4 cut(s)	99, 279, 340, 450
DpnI	GATC	5 cut(s)	80, 92, 157, 317, 347
DpnII	GATC	5 cut(s)	78, 90, 155, 315, 345
EaeI	YGGCCR	1 cut(s)	271
Eco31I	GGTCTC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	208
Eco88I	CYCGRG	1 cut(s)	357
EcoT22I	ATGCAT	1 cut(s)	64
FaeI	CATG	3 cut(s)	66, 222, 248
FaqI	GGGAC	1 cut(s)	509
FatI	CATG	3 cut(s)	62, 218, 244
Fnu4HI	GCNGC	2 cut(s)	271, 431
Fsp4HI	GCNGC	2 cut(s)	271, 431
FspBI	CTAG	3 cut(s)	159, 177, 372
GluI	GCNGC	2 cut(s)	271, 431
HaeIII	GGCC	3 cut(s)	189, 273, 377
Hin1II	CATG	3 cut(s)	66, 222, 248
HinfI	GANTC	2 cut(s)	475, 506
HphI	GGTGA	2 cut(s)	449, 508
Hpy188I	TCNGA	1 cut(s)	282
Hpy188III	TCNNGA	3 cut(s)	82, 119, 359
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	1 cut(s)	547
HpyCH4III	ACNGT	1 cut(s)	424
HpyCH4IV	ACGT	1 cut(s)	533
HpyCH4V	TGCA	5 cut(s)	62, 68, 218, 327, 575
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 186, 256, 299
HpyF3I	CTNAG	4 cut(s)	99, 279, 340, 450
HpySE526I	ACGT	1 cut(s)	533
Hsp92II	CATG	3 cut(s)	66, 222, 248
Kzo9I	GATC	5 cut(s)	78, 90, 155, 315, 345
LpnPI	CCDG	3 cut(s)	133, 381, 478
Lsp1109I	GCAGC	1 cut(s)	442
LweI	GCATC	1 cut(s)	189
MaeI	CTAG	3 cut(s)	159, 177, 372
MaeII	ACGT	1 cut(s)	533
MaeIII	GTNAC	3 cut(s)	20, 383, 418
MalI	GATC	5 cut(s)	80, 92, 157, 317, 347
MboI	GATC	5 cut(s)	78, 90, 155, 315, 345
MboII	GAAGA	4 cut(s)	227, 230, 382, 562
MfeI	CAATTG	1 cut(s)	74
MflI	RGATCY	1 cut(s)	155
MluCI	AATT	2 cut(s)	74, 122
MmeI	TCCRAC	1 cut(s)	452
MnlI	CCTC	8 cut(s)	78, 94, 190, 366, 445, 496, 524, 535
Mph1103I	ATGCAT	1 cut(s)	64
MseI	TTAA	1 cut(s)	144
MunI	CAATTG	1 cut(s)	74
MwoI	GCNNNNNNNGC	4 cut(s)	104, 186, 256, 299
NdeII	GATC	5 cut(s)	78, 90, 155, 315, 345
NlaIII	CATG	3 cut(s)	66, 222, 248
NmeAIII	GCCGAG	1 cut(s)	565
NmuCI	GTSAC	1 cut(s)	383
NsiI	ATGCAT	1 cut(s)	64
NspI	RCATGY	2 cut(s)	66, 222
PaeI	GCATGC	1 cut(s)	222
PfeI	GAWTC	2 cut(s)	475, 506
PkrI	GCNGC	2 cut(s)	272, 432
PspPI	GGNCC	3 cut(s)	54, 188, 375
PsuI	RGATCY	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	2 cut(s)	271, 431
Sau3AI	GATC	5 cut(s)	78, 90, 155, 315, 345
Sau96I	GGNCC	3 cut(s)	54, 188, 375
SfaNI	GCATC	1 cut(s)	189
SinI	GGWCC	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SphI	GCATGC	1 cut(s)	222
Sse9I	AATT	2 cut(s)	74, 122
SsiI	CCGC	2 cut(s)	107, 270
SspMI	CTAG	3 cut(s)	159, 177, 372
TaaI	ACNGT	1 cut(s)	424
TaiI	ACGT	1 cut(s)	536
TaqI	TCGA	2 cut(s)	81, 183
TasI	AATT	2 cut(s)	74, 122
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	2 cut(s)	475, 506
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	1 cut(s)	348
TseFI	GTSAC	1 cut(s)	383
TseI	GCWGC	1 cut(s)	430
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	3 cut(s)	17, 160, 429
TspRI	CASTG	1 cut(s)	348
VpaK11BI	GGWCC	1 cut(s)	54
XapI	RAATTY	1 cut(s)	122
XceI	RCATGY	2 cut(s)	66, 222
XspI	CTAG	3 cut(s)	159, 177, 372
Zsp2I	ATGCAT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.