Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003128

Physical Location & Seq

Genomic Coordinates Forward (+)

11512260 .. 11513492

Gene Structure 1233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g12610.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCTGTATAATTTGCACTTTGTTATCGGAAAACTTACTTATCGTGTTCTATGTTTTCATAGGATCCTGCTTATTATGTGCTTAAAGAAGATGAATCCCCTTGCATTTTTGGATCTATTGAGAAGCAGAGATGGTCCTATGCATGCGCAAAACCCTTTAACTGGATTGGACCTAGGATGGATTTCATTCCTGGCATTGACGGCCCAAGTGAGGGTGTTCCAAGAGTTCTTGCATGCTTCAGTAATGTATAATCTTCTTCGCCATGAGCCTCTCAAGCTTGTAGATGGTGGCCAATCTCAGAGAACTTTTGTCTACATAAAGGATGCTATTGAAGCTGTTATGTTGATGATCGATCTAAGGCCAATGGTCACATCTTCAATGTTGGCAACCCTAACAATGAAGTTACTGTTAGGCAGCTTGGTTGGAATCCAAAGACCTCTCTCTGGGACTTGCTTGAATCAACCCTCACGTATCAGCATAGGACATATGCCGAGGCTGTCAAGAAGGCCATTTCCCAATCATCTGCAAACTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Epimerase

Protein Analysis

179

Amino Acids

20.3

Weight (kDa)

10.23

Isoelectric Point (pI)

45.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08200
fragaria_vesca	FvH4_3g30060 FvH4_3g30060 FvH4_3g30060 FvH4_3g30060
malus_domestica	MD03G1131500.v1.1 MD03G1131900.v1.1 MD03G1161900.v1.1 MD11G1154500.v1.1 MD11G1215900.v1.1 MD16G1216600.v1.1 MD16G1216800.v1.1
prunus_persica	Prupe.6G116900_v2.0.a1 Prupe.6G116900_v2.0.a1 Prupe.6G116900_v2.0.a1
pyrus_communis	pycom11g12600 pycom11g12610
rosa_chinensis	RchiOBHm_Chr5g0055821
rosa_laevigata	RLG00000002609 RLG00000035011
rosa_multiflora	Rmu_sc0003306.1_g000005 Rmu_sc0003500.1_g000032 Rmu_sc0003500.1_g000033 Rmu_sc0007802.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024520 Rroxscaffold_1G00052150
rosa_rugosa	Rorug05G0295000
rosa_samantha	Rh5AG192800 Rh5AG365900 Rh5BG190400 Rh5BG376600 Rh5CG399600 Rh5DG192100 Rh5DG389500 Rh5DG389600 Rh7BG106200
rosa_wichuraiana	Rw5G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	147
AccI	GTMKAC	1 cut(s)	312
AclWI	GGATC	3 cut(s)	58, 71, 120
AcoI	YGGCCR	1 cut(s)	289
AcuI	CTGAAG	1 cut(s)	222
AfiI	CCNNNNNNNGG	4 cut(s)	161, 210, 211, 443
AgsI	TTSAA	3 cut(s)	332, 378, 457
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	3 cut(s)	277, 335, 417
AluI	AGCT	3 cut(s)	277, 335, 417
AlwI	GGATC	3 cut(s)	58, 71, 120
AoxI	GGCC	4 cut(s)	201, 289, 359, 506
ApeKI	GCWGC	1 cut(s)	414
AspA2I	CCTAGG	1 cut(s)	172
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	3 cut(s)	134, 169, 202
AvaII	GGWCC	2 cut(s)	134, 169
AvrII	CCTAGG	1 cut(s)	172
BalI	TGGCCA	1 cut(s)	291
BamHI	GGATCC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	426
BccI	CCATC	3 cut(s)	125, 171, 278
BceAI	ACGGC	1 cut(s)	216
BciT130I	CCWGG	1 cut(s)	191
BfaI	CTAG	1 cut(s)	173
BisI	GCNGC	1 cut(s)	415
BlnI	CCTAGG	1 cut(s)	172
BlsI	GCNGC	1 cut(s)	416
Bme1390I	CCNGG	1 cut(s)	191
Bme18I	GGWCC	2 cut(s)	134, 169
BmgT120I	GGNCC	3 cut(s)	134, 169, 202
BmiI	GGNNCC	1 cut(s)	65
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	1 cut(s)	313
BpuEI	CTTGAG	1 cut(s)	257
Bsa29I	ATCGAT	1 cut(s)	351
BsaAI	YACGTR	1 cut(s)	470
BsaJI	CCNNGG	2 cut(s)	172, 491
Bsc4I	CCNNNNNNNGG	4 cut(s)	161, 210, 211, 443
Bse1I	ACTGG	1 cut(s)	166
BseBI	CCWGG	1 cut(s)	191
BseCI	ATCGAT	1 cut(s)	351
BseDI	CCNNGG	2 cut(s)	172, 491
BseGI	GGATG	2 cut(s)	182, 328
BseLI	CCNNNNNNNGG	4 cut(s)	161, 210, 211, 443
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	426
BshFI	GGCC	4 cut(s)	203, 291, 361, 508
BshVI	ATCGAT	1 cut(s)	351
BslFI	GGGAC	1 cut(s)	460
BslI	CCNNNNNNNGG	4 cut(s)	161, 210, 211, 443
BsmFI	GGGAC	1 cut(s)	460
BsnI	GGCC	4 cut(s)	203, 291, 361, 508
Bsp143I	GATC	4 cut(s)	63, 112, 348, 352
BspANI	GGCC	4 cut(s)	203, 291, 361, 508
BspCNI	CTCAG	1 cut(s)	310
BspDI	ATCGAT	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	65
BspPI	GGATC	3 cut(s)	58, 71, 120
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	2 cut(s)	172, 491
BssMI	GATC	4 cut(s)	63, 112, 348, 352
BssT1I	CCWWGG	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	408
BstBAI	YACGTR	1 cut(s)	470
BstC8I	GCNNGC	2 cut(s)	144, 234
BstDEI	CTNAG	2 cut(s)	297, 356
BstF5I	GGATG	2 cut(s)	182, 328
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	4 cut(s)	66, 115, 351, 355
BstMBI	GATC	4 cut(s)	63, 112, 348, 352
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 274, 332
BstNI	CCWGG	1 cut(s)	191
BstNSI	RCATGY	2 cut(s)	146, 236
BstSCI	CCNGG	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	426
BstX2I	RGATCY	2 cut(s)	63, 112
BstYI	RGATCY	2 cut(s)	63, 112
Bsu15I	ATCGAT	1 cut(s)	351
BsuRI	GGCC	4 cut(s)	203, 291, 361, 508
BsuTUI	ATCGAT	1 cut(s)	351
BtsCI	GGATG	2 cut(s)	182, 328
Cac8I	GCNNGC	2 cut(s)	144, 234
CfoI	GCGC	1 cut(s)	148
Cfr13I	GGNCC	3 cut(s)	134, 169, 202
ClaI	ATCGAT	1 cut(s)	351
CviAII	CATG	3 cut(s)	143, 233, 263
CviJI	RGCY	9 cut(s)	203, 268, 277, 291, 335, 361, 417, 496, 508
CviKI_1	RGCY	9 cut(s)	203, 268, 277, 291, 335, 361, 417, 496, 508
DdeI	CTNAG	2 cut(s)	297, 356
DpnI	GATC	4 cut(s)	65, 114, 350, 354
DpnII	GATC	4 cut(s)	63, 112, 348, 352
EaeI	YGGCCR	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	172
Eco47I	GGWCC	2 cut(s)	134, 169
Eco57I	CTGAAG	1 cut(s)	222
EcoRII	CCWGG	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	172
EcoT22I	ATGCAT	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	3 cut(s)	146, 236, 266
FaqI	GGGAC	1 cut(s)	460
FatI	CATG	3 cut(s)	142, 232, 262
FauNDI	CATATG	1 cut(s)	486
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	1 cut(s)	415
FokI	GGATG	2 cut(s)	189, 335
Fsp4HI	GCNGC	1 cut(s)	415
FspBI	CTAG	1 cut(s)	173
FspI	TGCGCA	1 cut(s)	147
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	415
HaeIII	GGCC	4 cut(s)	203, 291, 361, 508
HhaI	GCGC	1 cut(s)	148
Hin1II	CATG	3 cut(s)	146, 236, 266
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	3 cut(s)	94, 426, 457
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	2 cut(s)	29, 300
Hpy188III	TCNNGA	1 cut(s)	501
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	1 cut(s)	498
HpyCH4III	ACNGT	1 cut(s)	408
HpyCH4IV	ACGT	1 cut(s)	469
HpyCH4V	TGCA	5 cut(s)	16, 104, 142, 232, 526
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 274, 332
HpyF3I	CTNAG	2 cut(s)	297, 356
HpySE526I	ACGT	1 cut(s)	469
Hsp92II	CATG	3 cut(s)	146, 236, 266
HspAI	GCGC	1 cut(s)	146
Kzo9I	GATC	4 cut(s)	63, 112, 348, 352
LpnPI	CCDG	5 cut(s)	80, 147, 176, 203, 429
Lsp1109I	GCAGC	1 cut(s)	426
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	1 cut(s)	173
MaeII	ACGT	1 cut(s)	469
MaeIII	GTNAC	2 cut(s)	367, 402
MalI	GATC	4 cut(s)	65, 114, 350, 354
MboI	GATC	4 cut(s)	63, 112, 348, 352
MboII	GAAGA	4 cut(s)	100, 245, 248, 366
MflI	RGATCY	2 cut(s)	63, 112
MlsI	TGGCCA	1 cut(s)	291
MluCI	AATT	1 cut(s)	10
MluNI	TGGCCA	1 cut(s)	291
MmeI	TCCRAC	1 cut(s)	403
MnlI	CCTC	5 cut(s)	204, 279, 447, 475, 486
Mox20I	TGGCCA	1 cut(s)	291
Mph1103I	ATGCAT	1 cut(s)	144
MscI	TGGCCA	1 cut(s)	291
MseI	TTAA	2 cut(s)	83, 158
Msp20I	TGGCCA	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	3 cut(s)	200, 274, 332
NdeI	CATATG	1 cut(s)	486
NdeII	GATC	4 cut(s)	63, 112, 348, 352
NlaIII	CATG	3 cut(s)	146, 236, 266
NlaIV	GGNNCC	1 cut(s)	65
NmeAIII	GCCGAG	1 cut(s)	516
NmuCI	GTSAC	1 cut(s)	367
NsbI	TGCGCA	1 cut(s)	147
NsiI	ATGCAT	1 cut(s)	144
NspI	RCATGY	2 cut(s)	146, 236
PaeI	GCATGC	2 cut(s)	146, 236
PfeI	GAWTC	3 cut(s)	94, 426, 457
PkrI	GCNGC	1 cut(s)	416
Ppu21I	YACGTR	1 cut(s)	470
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	65
PspPI	GGNCC	3 cut(s)	134, 169, 202
PsuI	RGATCY	2 cut(s)	63, 112
SaqAI	TTAA	2 cut(s)	83, 158
SatI	GCNGC	1 cut(s)	415
Sau3AI	GATC	4 cut(s)	63, 112, 348, 352
Sau96I	GGNCC	3 cut(s)	134, 169, 202
ScrFI	CCNGG	1 cut(s)	191
SetI	ASST	6 cut(s)	174, 279, 337, 419, 439, 472
SfaNI	GCATC	1 cut(s)	313
SinI	GGWCC	2 cut(s)	134, 169
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
SphI	GCATGC	2 cut(s)	146, 236
Sse9I	AATT	1 cut(s)	10
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	189
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	408
TaiI	ACGT	1 cut(s)	472
TaqI	TCGA	1 cut(s)	351
TasI	AATT	1 cut(s)	10
TfiI	GAWTC	3 cut(s)	94, 426, 457
Tru1I	TTAA	2 cut(s)	83, 158
Tru9I	TTAA	2 cut(s)	83, 158
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	1 cut(s)	414
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	4 cut(s)	47, 107, 174, 413
VpaK11BI	GGWCC	2 cut(s)	134, 169
XceI	RCATGY	2 cut(s)	146, 236
XmaJI	CCTAGG	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	312
XspI	CTAG	1 cut(s)	173
Zsp2I	ATGCAT	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.