Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0003128

Physical Location & Seq

Genomic Coordinates Forward (+)

21282883 .. 21283740

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1216600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGTGGGTATTTTTGGCGATCTGTACTCCGGCGGACTACAACACCCTCCCGCTCGACACCGTCTACAACAACTTCATCGATGCTTTGCCGGTGGTGGGTGAAGTACTGCTCCGAAAACAACAAGCGGTTGATTCAGTGTTTCACTGGTCTCTAGACACTCTCGGCATTTCGCAGGAACACGTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464 GO:0048046

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Epimerase

Protein Analysis

63

Amino Acids

7.02

Weight (kDa)

4.32

Isoelectric Point (pI)

26.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08200
fragaria_vesca	FvH4_3g30060 FvH4_3g30060 FvH4_3g30060 FvH4_3g30060
malus_domestica	MD03G1131500.v1.1 MD03G1131900.v1.1 MD03G1161900.v1.1 MD11G1154500.v1.1 MD11G1215900.v1.1 MD16G1216600.v1.1 MD16G1216800.v1.1
prunus_persica	Prupe.6G116900_v2.0.a1 Prupe.6G116900_v2.0.a1 Prupe.6G116900_v2.0.a1
pyrus_communis	pycom11g12600 pycom11g12610
rosa_chinensis	RchiOBHm_Chr5g0055821
rosa_laevigata	RLG00000002609 RLG00000035011
rosa_multiflora	Rmu_sc0003306.1_g000005 Rmu_sc0003500.1_g000032 Rmu_sc0003500.1_g000033 Rmu_sc0007802.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024520 Rroxscaffold_1G00052150
rosa_rugosa	Rorug05G0295000
rosa_samantha	Rh5AG192800 Rh5AG365900 Rh5BG190400 Rh5BG376600 Rh5CG399600 Rh5DG192100 Rh5DG389500 Rh5DG389600 Rh7BG106200
rosa_wichuraiana	Rw5G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	52
AccI	GTMKAC	1 cut(s)	63
AciI	CCGC	3 cut(s)	32, 50, 125
AfaI	GTAC	2 cut(s)	25, 105
AfiI	CCNNNNNNNGG	1 cut(s)	95
AflIII	ACRYGT	1 cut(s)	178
Alw26I	GTCTC	1 cut(s)	153
AsuHPI	GGTGA	1 cut(s)	110
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	1 cut(s)	152
BmcAI	AGTACT	1 cut(s)	105
BmsI	GCATC	1 cut(s)	70
Bsa29I	ATCGAT	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse118I	RCCGGY	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	149
BseCI	ATCGAT	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	149
BshVI	ATCGAT	1 cut(s)	78
BsiSI	CCGG	2 cut(s)	29, 89
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	153
Bso31I	GGTCTC	1 cut(s)	153
Bsp143I	GATC	1 cut(s)	18
BspACI	CCGC	3 cut(s)	32, 50, 125
BspDI	ATCGAT	1 cut(s)	78
BspTNI	GGTCTC	1 cut(s)	153
BsrBI	CCGCTC	1 cut(s)	52
BsrFI	RCCGGY	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	149
BssAI	RCCGGY	1 cut(s)	88
BssMI	GATC	1 cut(s)	18
Bst4CI	ACNGT	1 cut(s)	61
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	18
Bsu15I	ATCGAT	1 cut(s)	78
BsuTUI	ATCGAT	1 cut(s)	78
BtsIMutI	CAGTG	2 cut(s)	141, 142
Cfr10I	RCCGGY	1 cut(s)	88
ClaI	ATCGAT	1 cut(s)	78
Csp6I	GTAC	2 cut(s)	24, 104
CviQI	GTAC	2 cut(s)	24, 104
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
EciI	GGCGGA	1 cut(s)	47
Eco31I	GGTCTC	1 cut(s)	153
FauI	CCCGC	1 cut(s)	57
FblI	GTMKAC	1 cut(s)	63
FspBI	CTAG	1 cut(s)	152
HapII	CCGG	2 cut(s)	29, 89
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	2 cut(s)	29, 89
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	1 cut(s)	113
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4IV	ACGT	1 cut(s)	180
HpySE526I	ACGT	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	18
LmnI	GCTCC	1 cut(s)	114
LpnPI	CCDG	4 cut(s)	42, 102, 130, 158
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	1 cut(s)	152
MaeII	ACGT	1 cut(s)	180
MalI	GATC	1 cut(s)	20
MbiI	CCGCTC	1 cut(s)	52
MboI	GATC	1 cut(s)	18
MluCI	AATT	1 cut(s)	184
MnlI	CCTC	1 cut(s)	56
MseI	TTAA	1 cut(s)	183
MspI	CCGG	2 cut(s)	29, 89
NdeII	GATC	1 cut(s)	18
NmeAIII	GCCGAG	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	131
PflFI	GACNNNGTC	1 cut(s)	59
PsyI	GACNNNGTC	1 cut(s)	59
RsaI	GTAC	2 cut(s)	25, 105
RsaNI	GTAC	2 cut(s)	24, 104
SaqAI	TTAA	1 cut(s)	183
Sau3AI	GATC	1 cut(s)	18
ScaI	AGTACT	1 cut(s)	105
SetI	ASST	1 cut(s)	183
SfaNI	GCATC	1 cut(s)	70
SgeI	CNNG	9 cut(s)	41, 61, 65, 101, 134, 157, 164, 173, 185
Sse9I	AATT	1 cut(s)	184
SsiI	CCGC	3 cut(s)	32, 50, 125
SspMI	CTAG	1 cut(s)	152
TaaI	ACNGT	1 cut(s)	61
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	2 cut(s)	54, 78
TasI	AATT	1 cut(s)	184
TatI	WGTACW	2 cut(s)	23, 103
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	2 cut(s)	141, 149
TspDTI	ATGAA	1 cut(s)	64
TspRI	CASTG	2 cut(s)	141, 149
Tth111I	GACNNNGTC	1 cut(s)	59
XbaI	TCTAGA	1 cut(s)	151
XmiI	GTMKAC	1 cut(s)	63
XspI	CTAG	1 cut(s)	152
ZrmI	AGTACT	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.