Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0003128

Physical Location & Seq

Genomic Coordinates Forward (+)

21285435 .. 21286533

Gene Structure 1099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1216800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCTAGTCATTTCTTTGTTCTACTTTTATATGGTGCGGAAAATGGTCTTCAATTTACCATTGTGAGACCCTTTAACTGGATTGGACCTAGGATGGATTTCATTCCTGGCATTGATGGCCCAAGTGAGGGTGTTGCAAGAGTTCTTGCATTCTTCAGTAATAATCTTCTTTGCCGTGAGCCTCTCAAGCTTGTACATGGCGGCCAATCTCATAGAACTTTTGTCTACATAAAGGATGCTATTGAAGCTGTTATGTTGATGATCGTAAGAAATCCTGCTAGGGCCAATGGTCACATCTTCAATGTAGGCAACCCTCACAATGAAGTTACTGTAAGGCAGCTTGGTGAAATGATGACTGAGATGTTGCAGTTGATCATTTGTTGTCAGAGTGACCAATGTGCCTCTCGCATTTTCAGCACCTATTGCTACAACTGTGAGTGCTCCATTGATTGGGGAGCCTACACCCCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009987 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0036094 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048037 GO:0048040 GO:0048046 GO:0050662 GO:0051287 GO:0055086 GO:0071704 GO:0097159 GO:1901135 GO:1901137 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Epimerase

Protein Analysis

158

Amino Acids

17.74

Weight (kDa)

6.17

Isoelectric Point (pI)

27.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	10 - 103	7e-15	NAD dependent epimerase/dehydratase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08200
fragaria_vesca	FvH4_3g30060 FvH4_3g30060 FvH4_3g30060 FvH4_3g30060
malus_domestica	MD03G1131500.v1.1 MD03G1131900.v1.1 MD03G1161900.v1.1 MD11G1154500.v1.1 MD11G1215900.v1.1 MD16G1216600.v1.1 MD16G1216800.v1.1
prunus_persica	Prupe.6G116900_v2.0.a1 Prupe.6G116900_v2.0.a1 Prupe.6G116900_v2.0.a1
pyrus_communis	pycom11g12600 pycom11g12610
rosa_chinensis	RchiOBHm_Chr5g0055821
rosa_laevigata	RLG00000002609 RLG00000035011
rosa_multiflora	Rmu_sc0003306.1_g000005 Rmu_sc0003500.1_g000032 Rmu_sc0003500.1_g000033 Rmu_sc0007802.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024520 Rroxscaffold_1G00052150
rosa_rugosa	Rorug05G0295000
rosa_samantha	Rh5AG192800 Rh5AG365900 Rh5BG190400 Rh5BG376600 Rh5CG399600 Rh5DG192100 Rh5DG389500 Rh5DG389600 Rh7BG106200
rosa_wichuraiana	Rw5G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	450
AccI	GTMKAC	1 cut(s)	225
AciI	CCGC	2 cut(s)	38, 201
AcoI	YGGCCR	1 cut(s)	202
AcuI	CTGAAG	1 cut(s)	139
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	4 cut(s)	78, 127, 128, 450
AgsI	TTSAA	3 cut(s)	53, 245, 301
AjnI	CCWGG	1 cut(s)	106
AluBI	AGCT	3 cut(s)	190, 248, 340
AluI	AGCT	3 cut(s)	190, 248, 340
Alw21I	GWGCWC	1 cut(s)	443
Alw26I	GTCTC	1 cut(s)	61
AoxI	GGCC	3 cut(s)	118, 202, 282
ApeKI	GCWGC	1 cut(s)	337
AspA2I	CCTAGG	1 cut(s)	89
AspS9I	GGNCC	3 cut(s)	86, 119, 282
AsuHPI	GGTGA	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	86
AvrII	CCTAGG	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	443
BbvI	GCAGC	1 cut(s)	349
BccI	CCATC	2 cut(s)	88, 110
BceAI	ACGGC	1 cut(s)	159
BciT130I	CCWGG	1 cut(s)	108
BclI	TGATCA	1 cut(s)	372
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	3 cut(s)	6, 90, 279
BisI	GCNGC	2 cut(s)	202, 338
BlnI	CCTAGG	1 cut(s)	89
BlsI	GCNGC	2 cut(s)	203, 339
Bme1390I	CCNGG	1 cut(s)	108
Bme18I	GGWCC	1 cut(s)	86
BmgT120I	GGNCC	3 cut(s)	86, 119, 282
BmiI	GGNNCC	1 cut(s)	457
BmrFI	CCNGG	1 cut(s)	108
BmsI	GCATC	1 cut(s)	226
BpiI	GAAGAC	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	170
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	4 cut(s)	78, 127, 128, 450
Bse1I	ACTGG	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	89
BseGI	GGATG	2 cut(s)	99, 241
BseLI	CCNNNNNNNGG	4 cut(s)	78, 127, 128, 450
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	349
BshFI	GGCC	3 cut(s)	120, 204, 284
BsiHKAI	GWGCWC	1 cut(s)	443
BslI	CCNNNNNNNGG	4 cut(s)	78, 127, 128, 450
BsmAI	GTCTC	1 cut(s)	61
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	3 cut(s)	120, 204, 284
Bso31I	GGTCTC	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	443
Bsp1407I	TGTACA	1 cut(s)	193
Bsp143I	GATC	2 cut(s)	261, 372
BspACI	CCGC	2 cut(s)	38, 201
BspANI	GGCC	3 cut(s)	120, 204, 284
BspCNI	CTCAG	1 cut(s)	349
BspLI	GGNNCC	1 cut(s)	457
BspTNI	GGTCTC	1 cut(s)	61
BsrGI	TGTACA	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	89
BssMI	GATC	2 cut(s)	261, 372
BssT1I	CCWWGG	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	2 cut(s)	331, 434
BstAPI	GCANNNNNTGC	1 cut(s)	423
BstAUI	TGTACA	1 cut(s)	193
BstDEI	CTNAG	1 cut(s)	357
BstF5I	GGATG	2 cut(s)	99, 241
BstKTI	GATC	2 cut(s)	264, 375
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	2 cut(s)	261, 372
BstMWI	GCNNNNNNNGC	5 cut(s)	117, 187, 245, 414, 423
BstNI	CCWGG	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	349
BstV2I	GAAGAC	1 cut(s)	41
BsuRI	GGCC	3 cut(s)	120, 204, 284
BtsCI	GGATG	2 cut(s)	99, 241
Cfr13I	GGNCC	3 cut(s)	86, 119, 282
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	1 cut(s)	197
CviJI	RGCY	9 cut(s)	5, 120, 181, 190, 204, 248, 284, 340, 458
CviKI_1	RGCY	9 cut(s)	5, 120, 181, 190, 204, 248, 284, 340, 458
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	2 cut(s)	263, 374
DpnII	GATC	2 cut(s)	261, 372
EaeI	YGGCCR	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	89
Eco31I	GGTCTC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	106
EcoT14I	CCWWGG	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	89
FaeI	CATG	1 cut(s)	200
FaiI	YATR	6 cut(s)	31, 33, 198, 213, 230, 254
FatI	CATG	1 cut(s)	196
FbaI	TGATCA	1 cut(s)	372
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	2 cut(s)	202, 338
FokI	GGATG	2 cut(s)	106, 248
Fsp4HI	GCNGC	2 cut(s)	202, 338
FspBI	CTAG	3 cut(s)	6, 90, 279
GluI	GCNGC	2 cut(s)	202, 338
HaeIII	GGCC	3 cut(s)	120, 204, 284
Hin1II	CATG	1 cut(s)	200
HindIII	AAGCTT	1 cut(s)	188
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	1 cut(s)	387
Hpy8I	GTNNAC	1 cut(s)	226
HpyCH4III	ACNGT	2 cut(s)	331, 434
HpyCH4V	TGCA	3 cut(s)	137, 149, 367
HpyF10VI	GCNNNNNNNGC	5 cut(s)	117, 187, 245, 414, 423
HpyF3I	CTNAG	1 cut(s)	357
Hsp92II	CATG	1 cut(s)	200
Ksp22I	TGATCA	1 cut(s)	372
Kzo9I	GATC	2 cut(s)	261, 372
LmnI	GCTCC	2 cut(s)	446, 455
LpnPI	CCDG	4 cut(s)	64, 93, 120, 288
Lsp1109I	GCAGC	1 cut(s)	349
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	3 cut(s)	6, 90, 279
MaeIII	GTNAC	3 cut(s)	290, 325, 389
MalI	GATC	2 cut(s)	263, 374
MboI	GATC	2 cut(s)	261, 372
MboII	GAAGA	4 cut(s)	41, 145, 158, 289
MhlI	GDGCHC	1 cut(s)	443
MluCI	AATT	1 cut(s)	53
MnlI	CCTC	4 cut(s)	121, 192, 324, 412
MseI	TTAA	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	108
Mva1269I	GAATGC	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	5 cut(s)	117, 187, 245, 414, 423
NdeII	GATC	2 cut(s)	261, 372
NlaIII	CATG	1 cut(s)	200
NlaIV	GGNNCC	1 cut(s)	457
NmuCI	GTSAC	2 cut(s)	290, 389
PctI	GAATGC	1 cut(s)	149
PflMI	CCANNNNNTGG	1 cut(s)	450
PkrI	GCNGC	2 cut(s)	203, 339
Psp6I	CCWGG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	457
PspPI	GGNCC	3 cut(s)	86, 119, 282
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	2 cut(s)	202, 338
Sau3AI	GATC	2 cut(s)	261, 372
Sau96I	GGNCC	3 cut(s)	86, 119, 282
ScrFI	CCNGG	1 cut(s)	108
SduI	GDGCHC	1 cut(s)	443
SetI	ASST	5 cut(s)	91, 192, 250, 342, 422
SfaNI	GCATC	1 cut(s)	226
SinI	GGWCC	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	1 cut(s)	53
SsiI	CCGC	2 cut(s)	38, 201
SspMI	CTAG	3 cut(s)	6, 90, 279
StyD4I	CCNGG	1 cut(s)	106
StyI	CCWWGG	1 cut(s)	89
TaaI	ACNGT	2 cut(s)	331, 434
TasI	AATT	1 cut(s)	53
TatI	WGTACW	1 cut(s)	193
TauI	GCSGC	1 cut(s)	204
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TseFI	GTSAC	2 cut(s)	290, 389
TseI	GCWGC	1 cut(s)	337
Tsp45I	GTSAC	2 cut(s)	290, 389
TspDTI	ATGAA	2 cut(s)	91, 336
Van91I	CCANNNNNTGG	1 cut(s)	450
VpaK11BI	GGWCC	1 cut(s)	86
XmaJI	CCTAGG	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	225
XspI	CTAG	3 cut(s)	6, 90, 279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.