Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0003128

Physical Location & Seq

Genomic Coordinates Forward (+)

31544588 .. 31545111

Gene Structure 524 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1215900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGTTAGTCATCTCTCTGTTCTACTTTTATATGGTGCGGAAAATGGTCTTGAATTTACCATTGTGAGACCCTTTAACTGGATTGGACCTAGGATGGATTTCATTCCTGGCATTGATGGCCCAAGTGAGGGTGTTCCAAGAGTTCTTGCATGCTTCAGTAATAATCTTCTTCGCCGTGAGCCTCTCAAGCTCGTATATGGCAGCCAATCTCATAGAACTTTTGTCTACATAAATGATGCTATTGAAGCTGTTATGTTGATGATCGAAATCTTGCTAGGGCCAATGGTCACATCTTCAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009987 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0036094 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048037 GO:0048040 GO:0048046 GO:0050662 GO:0051287 GO:0055086 GO:0071704 GO:0097159 GO:1901135 GO:1901137 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Epimerase

Protein Analysis

101

Amino Acids

11.17

Weight (kDa)

5.53

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	8 - 89	1.4e-11	NAD dependent epimerase/dehydratase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08200
fragaria_vesca	FvH4_3g30060 FvH4_3g30060 FvH4_3g30060 FvH4_3g30060
malus_domestica	MD03G1131500.v1.1 MD03G1131900.v1.1 MD03G1161900.v1.1 MD11G1154500.v1.1 MD11G1215900.v1.1 MD16G1216600.v1.1 MD16G1216800.v1.1
prunus_persica	Prupe.6G116900_v2.0.a1 Prupe.6G116900_v2.0.a1 Prupe.6G116900_v2.0.a1
pyrus_communis	pycom11g12600 pycom11g12610
rosa_chinensis	RchiOBHm_Chr5g0055821
rosa_laevigata	RLG00000002609 RLG00000035011
rosa_multiflora	Rmu_sc0003306.1_g000005 Rmu_sc0003500.1_g000032 Rmu_sc0003500.1_g000033 Rmu_sc0007802.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024520 Rroxscaffold_1G00052150
rosa_rugosa	Rorug05G0295000
rosa_samantha	Rh5AG192800 Rh5AG365900 Rh5BG190400 Rh5BG376600 Rh5CG399600 Rh5DG192100 Rh5DG389500 Rh5DG389600 Rh7BG106200
rosa_wichuraiana	Rw5G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	225
AciI	CCGC	1 cut(s)	38
AcsI	RAATTY	1 cut(s)	53
AcuI	CTGAAG	1 cut(s)	139
AfiI	CCNNNNNNNGG	3 cut(s)	78, 127, 128
AgsI	TTSAA	3 cut(s)	53, 245, 297
AjnI	CCWGG	1 cut(s)	106
AluBI	AGCT	2 cut(s)	190, 248
AluI	AGCT	2 cut(s)	190, 248
Alw26I	GTCTC	1 cut(s)	61
AoxI	GGCC	2 cut(s)	118, 278
ApeKI	GCWGC	1 cut(s)	201
ApoI	RAATTY	1 cut(s)	53
AspA2I	CCTAGG	1 cut(s)	89
AspS9I	GGNCC	3 cut(s)	86, 119, 278
AvaII	GGWCC	1 cut(s)	86
AvrII	CCTAGG	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	213
BccI	CCATC	2 cut(s)	88, 110
BceAI	ACGGC	1 cut(s)	159
BciT130I	CCWGG	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	2 cut(s)	90, 275
BisI	GCNGC	1 cut(s)	202
BlnI	CCTAGG	1 cut(s)	89
BlsI	GCNGC	1 cut(s)	203
Bme1390I	CCNGG	1 cut(s)	108
Bme18I	GGWCC	1 cut(s)	86
BmgT120I	GGNCC	3 cut(s)	86, 119, 278
BmrFI	CCNGG	1 cut(s)	108
BmsI	GCATC	1 cut(s)	226
BpuEI	CTTGAG	1 cut(s)	170
BsaBI	GATNNNNATC	1 cut(s)	266
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	3 cut(s)	78, 127, 128
Bse1I	ACTGG	1 cut(s)	83
Bse8I	GATNNNNATC	1 cut(s)	266
BseBI	CCWGG	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	89
BseGI	GGATG	1 cut(s)	99
BseJI	GATNNNNATC	1 cut(s)	266
BseLI	CCNNNNNNNGG	3 cut(s)	78, 127, 128
BseNI	ACTGG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	213
BshFI	GGCC	2 cut(s)	120, 280
BslI	CCNNNNNNNGG	3 cut(s)	78, 127, 128
BsmAI	GTCTC	1 cut(s)	61
BsnI	GGCC	2 cut(s)	120, 280
Bso31I	GGTCTC	1 cut(s)	61
Bsp143I	GATC	1 cut(s)	261
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	2 cut(s)	120, 280
BspTNI	GGTCTC	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	89
BssMI	GATC	1 cut(s)	261
BssT1I	CCWWGG	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	151
BstF5I	GGATG	1 cut(s)	99
BstKTI	GATC	1 cut(s)	264
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	1 cut(s)	261
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 187, 245
BstNI	CCWGG	1 cut(s)	108
BstNSI	RCATGY	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	120, 280
BtsCI	GGATG	1 cut(s)	99
Cac8I	GCNNGC	1 cut(s)	151
Cfr13I	GGNCC	3 cut(s)	86, 119, 278
CviAII	CATG	1 cut(s)	150
CviJI	RGCY	6 cut(s)	120, 181, 190, 204, 248, 280
CviKI_1	RGCY	6 cut(s)	120, 181, 190, 204, 248, 280
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	89
Eco31I	GGTCTC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	106
EcoT14I	CCWWGG	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	89
FaeI	CATG	1 cut(s)	153
FaiI	YATR	8 cut(s)	31, 33, 151, 196, 198, 213, 230, 254
FatI	CATG	1 cut(s)	149
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	1 cut(s)	202
FokI	GGATG	1 cut(s)	106
Fsp4HI	GCNGC	1 cut(s)	202
FspBI	CTAG	2 cut(s)	90, 275
GluI	GCNGC	1 cut(s)	202
HaeIII	GGCC	2 cut(s)	120, 280
Hin1II	CATG	1 cut(s)	153
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188III	TCNNGA	1 cut(s)	50
Hpy8I	GTNNAC	1 cut(s)	226
HpyCH4V	TGCA	1 cut(s)	149
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 187, 245
Hsp92II	CATG	1 cut(s)	153
Kzo9I	GATC	1 cut(s)	261
LpnPI	CCDG	3 cut(s)	64, 93, 120
Lsp1109I	GCAGC	1 cut(s)	213
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	2 cut(s)	90, 275
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MboII	GAAGA	3 cut(s)	158, 161, 285
MluCI	AATT	1 cut(s)	53
MnlI	CCTC	2 cut(s)	121, 192
MseI	TTAA	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	3 cut(s)	117, 187, 245
NdeII	GATC	1 cut(s)	261
NlaIII	CATG	1 cut(s)	153
NmuCI	GTSAC	1 cut(s)	286
NspI	RCATGY	1 cut(s)	153
PaeI	GCATGC	1 cut(s)	153
PkrI	GCNGC	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	106
PspPI	GGNCC	3 cut(s)	86, 119, 278
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	1 cut(s)	202
Sau3AI	GATC	1 cut(s)	261
Sau96I	GGNCC	3 cut(s)	86, 119, 278
ScrFI	CCNGG	1 cut(s)	108
SetI	ASST	3 cut(s)	91, 192, 250
SfaNI	GCATC	1 cut(s)	226
SinI	GGWCC	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SphI	GCATGC	1 cut(s)	153
Sse9I	AATT	1 cut(s)	53
SsiI	CCGC	1 cut(s)	38
SspMI	CTAG	2 cut(s)	90, 275
StyD4I	CCNGG	1 cut(s)	106
StyI	CCWWGG	1 cut(s)	89
TaqI	TCGA	1 cut(s)	264
TasI	AATT	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	1 cut(s)	201
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	86
XapI	RAATTY	1 cut(s)	53
XceI	RCATGY	1 cut(s)	153
XmaJI	CCTAGG	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	225
XspI	CTAG	2 cut(s)	90, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.