FvH4_3g30060

UDP-D-apiose UDP-D-xylose synthase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
23290921 .. 23294485
3565 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30060.t3

Sequence Viewer

Length: 1176 bp
ATGGCGTCCTCGGCGACGAGAGTAGATCTGGACGGGAGCCCGATAAAGCCGATGACGATATGCATGATCGGCGCCGGAGGCTTCATCGGGTCCCACCTCTGCGAGAAGCTCATGGCGGAGACGCCGCACAAGGTGTTAGCCCTAGACGTGTACAATGACAAGATAAAGCATCTGCTGGAGCCATCCGACGGTCATCCTTGGTCCGATCGCATCCAGTTCCACCGCCTCAACATCAAGCACGACTCCCGCCTTGAAGGCCTCATCAAGACCTCAGATCTGACTATCAATCTCGCCGCGATCTGCACTCCGGCGGACTACAACACGCGCCCGCTGGACACTATTTACAGTAACTTCATCGATGCCTTGCCTGTGGTGAAGTACTGTTCTGAAAATAACAAGAGGTTGATTCACTTTTCCACTTGTGAAGTGTATGGGAAGACCATTGGAAGCTTTCTTCCTAAAGATAGCCCCCTTCGTCAGGATCCTGAATATTATCTGCTTAAAGAAAATGATTCCCCTTGCATCTTTGGGTCAATTGAGAAGCAAAGATGGTCATATGCTTGTGCAAAGCAATTGATCGAGAGGCTGATATATGCCGAGGGTGCAGAAAATGGTCTCGAGTTTACCATTGTCAGACCCTTTAACTGGATCGGACCTAGGATGGATTTCATTCCTGGTATTGATGGCCCAAGTGAGGGTGTTCCAAGAGTTCTAGCATGCTTTAGTAATAATCTTCTTCGTCGTGAACCACTCAAGCTTGTAGATGGTGGCGAATCTCAAAGAACATTCGTTTATATAAAGGATGCTATTGATGCTGTTATGTTGATGATTGAAAATCCTGCTAGGGCCAATGGTCACATTTTCAATGTGGGCAACCCCAATAATGAAGTCACAGTTAGGCAGTTGGGTGAAATGATGACTGAGGTTTATGCAAAGGTAAGTGGTGAGCCAAAACTCGAGCAACCAACTATTGATGTCAGCTCTAAGGAATTCTATGGAGTGGGATATGATGATAGTGACAAGAGAATTCCAGACATGACTATCATTAACAGGCAGCTTGGCTGGAATCCAAAGACTTCACTATGGGACTTGCTTGAATCAACCCTCACCTATCAGCATAGGACTTATGCCGAGGCTATTAAGAAGGCTATTTCCCAACCAGCTTCCACAAACTAA

Protein Analysis

392

Amino Acids

43.96

Weight (kDa)

5.78

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 20 - 279 1.8e-43 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 21 - 140 3.6e-06 Polysaccharide biosynthesis protein
3Beta_HSD PF01073 22 - 146 2.8e-06 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 24 - 278 2.5e-19 GDP-mannose 4,6 dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 71
AccII CGCG 2 cut(s) 296, 325
AciI CCGC 7 cut(s) 116, 125, 223, 247, 294, 311, 329
AclWI GGATC 3 cut(s) 476, 489, 656
AcsI RAATTY 2 cut(s) 989, 1026
AcyI GRCGYC 3 cut(s) 5, 72, 122
AdeI CACNNNGTG 1 cut(s) 133
AfaI GTAC 2 cut(s) 152, 380
AfiI CCNNNNNNNGG 5 cut(s) 188, 478, 645, 694, 695
AflIII ACRYGT 1 cut(s) 147
AgsI TTSAA 4 cut(s) 254, 833, 865, 1097
AjiI CACGTC 1 cut(s) 148
AjnI CCWGG 1 cut(s) 673
AluBI AGCT 6 cut(s) 109, 450, 757, 981, 1057, 1163
AluI AGCT 6 cut(s) 109, 450, 757, 981, 1057, 1163
Alw26I GTCTC 2 cut(s) 113, 620
AlwI GGATC 3 cut(s) 476, 489, 656
Ama87I CYCGRG 2 cut(s) 617, 956
AoxI GGCC 3 cut(s) 256, 685, 846
ApeKI GCWGC 1 cut(s) 1054
ApoI RAATTY 2 cut(s) 989, 1026
AspA2I CCTAGG 1 cut(s) 656
AspLEI GCGC 2 cut(s) 74, 327
AspS9I GGNCC 5 cut(s) 90, 201, 653, 686, 846
AsuHPI GGTGA 4 cut(s) 385, 920, 956, 1099
AvaI CYCGRG 2 cut(s) 617, 956
AvaII GGWCC 3 cut(s) 90, 201, 653
AvrII CCTAGG 1 cut(s) 656
BamHI GGATCC 1 cut(s) 481
BanI GGYRCC 1 cut(s) 71
BanII GRGCYC 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 443
BbvI GCAGC 1 cut(s) 1066
BccI CCATC 5 cut(s) 190, 543, 655, 677, 758
BciT130I CCWGG 1 cut(s) 675
BcoDI GTCTC 2 cut(s) 113, 620
BfaI CTAG 4 cut(s) 143, 657, 713, 843
BfoI RGCGCY 1 cut(s) 75
BglI GCCNNNNNGGC 1 cut(s) 255
BglII AGATCT 2 cut(s) 25, 274
BisI GCNGC 3 cut(s) 125, 294, 1055
BlnI CCTAGG 1 cut(s) 656
BlsI GCNGC 3 cut(s) 126, 295, 1056
BmcAI AGTACT 1 cut(s) 380
Bme1390I CCNGG 1 cut(s) 675
Bme18I GGWCC 3 cut(s) 90, 201, 653
BmeT110I CYCGRG 2 cut(s) 617, 956
BmgBI CACGTC 1 cut(s) 148
BmgT120I GGNCC 5 cut(s) 90, 201, 653, 686, 846
BmiI GGNNCC 6 cut(s) 38, 73, 91, 92, 180, 483
BmrFI CCNGG 1 cut(s) 675
BmsI GCATC 6 cut(s) 178, 219, 349, 531, 793, 802
BpiI GAAGAC 1 cut(s) 443
BpmI CTGGAG 1 cut(s) 197
BpuEI CTTGAG 1 cut(s) 737
Bsa29I ATCGAT 1 cut(s) 357
BsaHI GRCGYC 3 cut(s) 5, 72, 122
BsaI GGTCTC 1 cut(s) 620
BsaJI CCNNGG 5 cut(s) 9, 197, 597, 656, 1131
Bsc4I CCNNNNNNNGG 5 cut(s) 188, 478, 645, 694, 695
Bse1I ACTGG 2 cut(s) 214, 650
BseBI CCWGG 1 cut(s) 675
BseCI ATCGAT 1 cut(s) 357
BseDI CCNNGG 5 cut(s) 9, 197, 597, 656, 1131
BseGI GGATG 5 cut(s) 182, 193, 210, 666, 808
BseLI CCNNNNNNNGG 5 cut(s) 188, 478, 645, 694, 695
BseMII CTCAG 2 cut(s) 285, 912
BseNI ACTGG 2 cut(s) 214, 650
BseXI GCAGC 1 cut(s) 1066
BsgI GTGCAG 2 cut(s) 286, 624
Bsh1236I CGCG 2 cut(s) 296, 325
Bsh1285I CGRYCG 1 cut(s) 208
BshFI GGCC 3 cut(s) 258, 687, 848
BshNI GGYRCC 1 cut(s) 71
BshVI ATCGAT 1 cut(s) 357
BsiEI CGRYCG 1 cut(s) 208
BsiHKCI CYCGRG 2 cut(s) 617, 956
BsiSI CCGG 2 cut(s) 75, 308
BslFI GGGAC 2 cut(s) 76, 1100
BslI CCNNNNNNNGG 5 cut(s) 188, 478, 645, 694, 695
BsmAI GTCTC 2 cut(s) 113, 620
BsmBI CGTCTC 1 cut(s) 113
BsmFI GGGAC 2 cut(s) 76, 1100
BsnI GGCC 3 cut(s) 258, 687, 848
Bso31I GGTCTC 1 cut(s) 620
BsoBI CYCGRG 2 cut(s) 617, 956
Bsp1286I GDGCHC 1 cut(s) 41
Bsp1407I TGTACA 1 cut(s) 150
Bsp143I GATC 8 cut(s) 25, 66, 205, 274, 297, 481, 576, 648
BspACI CCGC 7 cut(s) 116, 125, 223, 247, 294, 311, 329
BspANI GGCC 3 cut(s) 258, 687, 848
BspCNI CTCAG 2 cut(s) 284, 913
BspDI ATCGAT 1 cut(s) 357
BspFNI CGCG 2 cut(s) 296, 325
BspLI GGNNCC 6 cut(s) 38, 73, 91, 92, 180, 483
BspPI GGATC 3 cut(s) 476, 489, 656
BspT107I GGYRCC 1 cut(s) 71
BspTNI GGTCTC 1 cut(s) 620
BsrGI TGTACA 1 cut(s) 150
BsrI ACTGG 2 cut(s) 214, 650
BssECI CCNNGG 5 cut(s) 9, 197, 597, 656, 1131
BssMI GATC 8 cut(s) 25, 66, 205, 274, 297, 481, 576, 648
BssNI GRCGYC 3 cut(s) 5, 72, 122
BssT1I CCWWGG 2 cut(s) 197, 656
Bst2UI CCWGG 1 cut(s) 675
Bst4CI ACNGT 4 cut(s) 191, 347, 383, 895
BstACI GRCGYC 3 cut(s) 5, 72, 122
BstAUI TGTACA 1 cut(s) 150
BstC8I GCNNGC 2 cut(s) 329, 718
BstDEI CTNAG 3 cut(s) 271, 921, 984
BstENI CCTNNNNNAGG 1 cut(s) 476
BstF5I GGATG 5 cut(s) 182, 193, 210, 666, 808
BstFNI CGCG 2 cut(s) 296, 325
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 2 cut(s) 74, 327
BstKTI GATC 8 cut(s) 28, 69, 208, 277, 300, 484, 579, 651
BstMAI GTCTC 2 cut(s) 113, 620
BstMBI GATC 8 cut(s) 25, 66, 205, 274, 297, 481, 576, 648
BstMCI CGRYCG 1 cut(s) 208
BstMWI GCNNNNNNNGC 6 cut(s) 11, 69, 78, 255, 602, 812
BstNI CCWGG 1 cut(s) 675
BstNSI RCATGY 1 cut(s) 720
BstSCI CCNGG 1 cut(s) 673
BstUI CGCG 2 cut(s) 296, 325
BstV1I GCAGC 1 cut(s) 1066
BstV2I GAAGAC 1 cut(s) 443
BstX2I RGATCY 3 cut(s) 25, 274, 481
BstYI RGATCY 3 cut(s) 25, 274, 481
Bsu15I ATCGAT 1 cut(s) 357
BsuRI GGCC 3 cut(s) 258, 687, 848
BsuTUI ATCGAT 1 cut(s) 357
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 5 cut(s) 182, 193, 210, 666, 808
Cac8I GCNNGC 2 cut(s) 329, 718
CfoI GCGC 2 cut(s) 74, 327
Cfr13I GGNCC 5 cut(s) 90, 201, 653, 686, 846
ClaI ATCGAT 1 cut(s) 357
CseI GACGC 1 cut(s) 130
Csp6I GTAC 2 cut(s) 151, 379
CviAII CATG 4 cut(s) 64, 112, 717, 1036
CviQI GTAC 2 cut(s) 151, 379
DdeI CTNAG 3 cut(s) 271, 921, 984
DinI GGCGCC 1 cut(s) 73
DpnI GATC 8 cut(s) 27, 68, 207, 276, 299, 483, 578, 650
DpnII GATC 8 cut(s) 25, 66, 205, 274, 297, 481, 576, 648
DraIII CACNNNGTG 1 cut(s) 133
EciI GGCGGA 2 cut(s) 131, 326
Eco130I CCWWGG 2 cut(s) 197, 656
Eco147I AGGCCT 1 cut(s) 258
Eco24I GRGCYC 1 cut(s) 41
Eco31I GGTCTC 1 cut(s) 620
Eco47I GGWCC 3 cut(s) 90, 201, 653
Eco88I CYCGRG 2 cut(s) 617, 956
EcoNI CCTNNNNNAGG 1 cut(s) 476
EcoO109I RGGNCCY 1 cut(s) 90
EcoRI GAATTC 2 cut(s) 989, 1026
EcoRII CCWGG 1 cut(s) 673
EcoT14I CCWWGG 2 cut(s) 197, 656
EcoT22I ATGCAT 1 cut(s) 65
EcoT38I GRGCYC 1 cut(s) 41
EgeI GGCGCC 1 cut(s) 73
EheI GGCGCC 1 cut(s) 73
ErhI CCWWGG 2 cut(s) 197, 656
Esp3I CGTCTC 1 cut(s) 113
FaeI CATG 4 cut(s) 67, 115, 720, 1039
FaqI GGGAC 2 cut(s) 76, 1100
FatI CATG 4 cut(s) 63, 111, 716, 1035
FauI CCCGC 2 cut(s) 254, 336
FauNDI CATATG 1 cut(s) 556
Fnu4HI GCNGC 3 cut(s) 125, 294, 1055
FokI GGATG 5 cut(s) 169, 180, 197, 673, 815
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 3 cut(s) 125, 294, 1055
FspBI CTAG 4 cut(s) 143, 657, 713, 843
GlaI GCGC 2 cut(s) 73, 326
GluI GCNGC 3 cut(s) 125, 294, 1055
GsuI CTGGAG 1 cut(s) 197
HaeII RGCGCY 1 cut(s) 75
HaeIII GGCC 3 cut(s) 258, 687, 848
HapII CCGG 2 cut(s) 75, 308
HgaI GACGC 1 cut(s) 130
HhaI GCGC 2 cut(s) 74, 327
Hin1I GRCGYC 3 cut(s) 5, 72, 122
Hin1II CATG 4 cut(s) 67, 115, 720, 1039
Hin6I GCGC 2 cut(s) 72, 325
HinP1I GCGC 2 cut(s) 72, 325
HindIII AAGCTT 2 cut(s) 448, 755
HinfI GANTC 6 cut(s) 242, 406, 512, 773, 1066, 1097
HpaII CCGG 2 cut(s) 75, 308
HphI GGTGA 4 cut(s) 385, 920, 956, 1099
Hpy166II GTNNAC 3 cut(s) 151, 624, 746
Hpy188I TCNGA 7 cut(s) 187, 205, 274, 279, 388, 635, 653
Hpy188III TCNNGA 8 cut(s) 29, 265, 479, 485, 580, 617, 743, 1031
Hpy8I GTNNAC 3 cut(s) 151, 624, 746
Hpy99I CGWCG 3 cut(s) 19, 191, 744
HpyAV CCTTC 3 cut(s) 248, 482, 1138
HpyCH4III ACNGT 4 cut(s) 191, 347, 383, 895
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 6 cut(s) 63, 303, 522, 566, 605, 932
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 69, 78, 255, 602, 812
HpyF3I CTNAG 3 cut(s) 271, 921, 984
HpySE526I ACGT 1 cut(s) 147
Hsp92I GRCGYC 3 cut(s) 5, 72, 122
Hsp92II CATG 4 cut(s) 67, 115, 720, 1039
HspAI GCGC 2 cut(s) 72, 325
KasI GGCGCC 1 cut(s) 71
KflI GGGWCCC 1 cut(s) 90
Kzo9I GATC 8 cut(s) 25, 66, 205, 274, 297, 481, 576, 648
LmnI GCTCC 2 cut(s) 36, 178
Lsp1109I GCAGC 1 cut(s) 1066
LweI GCATC 6 cut(s) 178, 219, 349, 531, 793, 802
MaeI CTAG 4 cut(s) 143, 657, 713, 843
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 4 cut(s) 347, 854, 889, 1016
MalI GATC 8 cut(s) 27, 68, 207, 276, 299, 483, 578, 650
MboI GATC 8 cut(s) 25, 66, 205, 274, 297, 481, 576, 648
MboII GAAGA 4 cut(s) 446, 448, 725, 728
MfeI CAATTG 2 cut(s) 534, 572
MflI RGATCY 3 cut(s) 25, 274, 481
MhlI GDGCHC 1 cut(s) 41
MluCI AATT 4 cut(s) 534, 572, 989, 1026
Mly113I GGCGCC 1 cut(s) 72
MlyI GAGTC 1 cut(s) 236
MmeI TCCRAC 1 cut(s) 210
Mph1103I ATGCAT 1 cut(s) 65
MseI TTAA 4 cut(s) 501, 642, 1047, 1140
MspA1I CMGCKG 1 cut(s) 331
MspI CCGG 2 cut(s) 75, 308
MspR9I CCNGG 1 cut(s) 675
MunI CAATTG 2 cut(s) 534, 572
MvaI CCWGG 1 cut(s) 675
MvnI CGCG 2 cut(s) 296, 325
MwoI GCNNNNNNNGC 6 cut(s) 11, 69, 78, 255, 602, 812
NarI GGCGCC 1 cut(s) 72
NdeI CATATG 1 cut(s) 556
NdeII GATC 8 cut(s) 25, 66, 205, 274, 297, 481, 576, 648
NlaIII CATG 4 cut(s) 67, 115, 720, 1039
NlaIV GGNNCC 6 cut(s) 38, 73, 91, 92, 180, 483
NmeAIII GCCGAG 2 cut(s) 622, 1156
NmuCI GTSAC 3 cut(s) 854, 889, 1016
NsiI ATGCAT 1 cut(s) 65
NspI RCATGY 1 cut(s) 720
PaeI GCATGC 1 cut(s) 720
PaeR7I CTCGAG 2 cut(s) 617, 956
PceI AGGCCT 1 cut(s) 258
PfeI GAWTC 5 cut(s) 406, 512, 773, 1066, 1097
PkrI GCNGC 3 cut(s) 126, 295, 1056
Ple19I CGATCG 1 cut(s) 208
PleI GAGTC 1 cut(s) 236
PluTI GGCGCC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 236
PpuMI RGGWCCY 1 cut(s) 90
Psp5II RGGWCCY 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 673
PspGI CCWGG 1 cut(s) 673
PspN4I GGNNCC 6 cut(s) 38, 73, 91, 92, 180, 483
PspPI GGNCC 5 cut(s) 90, 201, 653, 686, 846
PspPPI RGGWCCY 1 cut(s) 90
PspXI VCTCGAGB 1 cut(s) 956
PsuI RGATCY 3 cut(s) 25, 274, 481
PvuI CGATCG 1 cut(s) 208
RsaI GTAC 2 cut(s) 152, 380
RsaNI GTAC 2 cut(s) 151, 379
SaqAI TTAA 4 cut(s) 501, 642, 1047, 1140
SatI GCNGC 3 cut(s) 125, 294, 1055
Sau3AI GATC 8 cut(s) 25, 66, 205, 274, 297, 481, 576, 648
Sau96I GGNCC 5 cut(s) 90, 201, 653, 686, 846
ScaI AGTACT 1 cut(s) 380
SchI GAGTC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 675
SduI GDGCHC 1 cut(s) 41
SfaNI GCATC 6 cut(s) 178, 219, 349, 531, 793, 802
SfoI GGCGCC 1 cut(s) 73
Sfr274I CTCGAG 2 cut(s) 617, 956
SinI GGWCC 3 cut(s) 90, 201, 653
SlaI CTCGAG 2 cut(s) 617, 956
SmlI CTYRAG 3 cut(s) 617, 752, 956
SmoI CTYRAG 3 cut(s) 617, 752, 956
SphI GCATGC 1 cut(s) 720
Sse9I AATT 4 cut(s) 534, 572, 989, 1026
SseBI AGGCCT 1 cut(s) 258
SsiI CCGC 7 cut(s) 116, 125, 223, 247, 294, 311, 329
SspDI GGCGCC 1 cut(s) 71
SspI AATATT 1 cut(s) 491
SspMI CTAG 4 cut(s) 143, 657, 713, 843
StuI AGGCCT 1 cut(s) 258
StyD4I CCNGG 1 cut(s) 673
StyI CCWWGG 2 cut(s) 197, 656
TaaI ACNGT 4 cut(s) 191, 347, 383, 895
TaiI ACGT 1 cut(s) 150
TaqI TCGA 4 cut(s) 357, 579, 618, 957
TasI AATT 4 cut(s) 534, 572, 989, 1026
TatI WGTACW 2 cut(s) 150, 378
TauI GCSGC 2 cut(s) 127, 296
TfiI GAWTC 5 cut(s) 406, 512, 773, 1066, 1097
Tru1I TTAA 4 cut(s) 501, 642, 1047, 1140
Tru9I TTAA 4 cut(s) 501, 642, 1047, 1140
TseFI GTSAC 3 cut(s) 854, 889, 1016
TseI GCWGC 1 cut(s) 1054
Tsp45I GTSAC 3 cut(s) 854, 889, 1016
TspDTI ATGAA 4 cut(s) 73, 343, 658, 900
VpaK11BI GGWCC 3 cut(s) 90, 201, 653
XagI CCTNNNNNAGG 1 cut(s) 476
XapI RAATTY 2 cut(s) 989, 1026
XceI RCATGY 1 cut(s) 720
XhoI CTCGAG 2 cut(s) 617, 956
XmaJI CCTAGG 1 cut(s) 656
XspI CTAG 4 cut(s) 143, 657, 713, 843
ZrmI AGTACT 1 cut(s) 380
Zsp2I ATGCAT 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.