Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003128

Physical Location & Seq

Genomic Coordinates Forward (+)

72830315 .. 72831438

Gene Structure 1124 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00052150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCGTCGGTGGCTGGTAGAGTAGATCTGGACGGCAAGCAGATAAAGCAGATGACGATATGCATGATCGGAGTCGGAGGGTTCATTGGGTCCCACCTCTGCGAGAAGCTGATGGCGGAGACGCCGCACAAGATTCTAGCCCTAGACGTGTACAATGACAAGATCAAGCACTTGCTGGAGTCGTCAGACGGTAATCCTTGGTCCGATCGCATCCAGTTCCACCACTTAAACATCAAGTACGACTCGCGCCTCGAAGGCCTCATCAAGACCTCAGATCTGACCATCAATCTCCTCGCGATCTGTACTCCGGCAGACTACAACATGCACTTCCTGGACATTATCTACAGTAACTTTATCGGTGGCTATGGCGATGGGGAAGGAATTAGAGATGGAGGAATGAGAGGCGGAGTTGATGACTTCAATGTCGTCCTCGTCAACGACGTCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009987 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0036094 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048037 GO:0048040 GO:0048046 GO:0050662 GO:0051287 GO:0055086 GO:0071704 GO:0097159 GO:1901135 GO:1901137 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Epimerase

Protein Analysis

149

Amino Acids

16.44

Weight (kDa)

5.18

Isoelectric Point (pI)

23.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	20 - 120	1.4e-09	NAD dependent epimerase/dehydratase family
Sacchrp_dh_NADP	PF03435	20 - 98	9.6e-06	Saccharopine dehydrogenase NADP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08200
fragaria_vesca	FvH4_3g30060 FvH4_3g30060 FvH4_3g30060 FvH4_3g30060
malus_domestica	MD03G1131500.v1.1 MD03G1131900.v1.1 MD03G1161900.v1.1 MD11G1154500.v1.1 MD11G1215900.v1.1 MD16G1216600.v1.1 MD16G1216800.v1.1
prunus_persica	Prupe.6G116900_v2.0.a1 Prupe.6G116900_v2.0.a1 Prupe.6G116900_v2.0.a1
pyrus_communis	pycom11g12600 pycom11g12610
rosa_chinensis	RchiOBHm_Chr5g0055821
rosa_laevigata	RLG00000002609 RLG00000035011
rosa_multiflora	Rmu_sc0003306.1_g000005 Rmu_sc0003500.1_g000032 Rmu_sc0003500.1_g000033 Rmu_sc0007802.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024520 Rroxscaffold_1G00052150
rosa_rugosa	Rorug05G0295000
rosa_samantha	Rh5AG192800 Rh5AG365900 Rh5BG190400 Rh5BG376600 Rh5CG399600 Rh5DG192100 Rh5DG389500 Rh5DG389600 Rh7BG106200
rosa_wichuraiana	Rw5G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	422
AatII	GACGTC	1 cut(s)	444
AccII	CGCG	2 cut(s)	247, 296
AciI	CCGC	3 cut(s)	116, 125, 405
AcyI	GRCGYC	3 cut(s)	5, 122, 441
AfaI	GTAC	3 cut(s)	152, 239, 304
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	1 cut(s)	421
AjiI	CACGTC	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	330
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
Alw26I	GTCTC	1 cut(s)	113
AoxI	GGCC	1 cut(s)	256
AspLEI	GCGC	1 cut(s)	249
AspS9I	GGNCC	2 cut(s)	90, 201
AvaII	GGWCC	2 cut(s)	90, 201
BccI	CCATC	4 cut(s)	106, 290, 365, 383
BceAI	ACGGC	1 cut(s)	49
BciT130I	CCWGG	1 cut(s)	332
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	3 cut(s)	137, 143, 448
BfmI	CTRYAG	1 cut(s)	343
BglI	GCCNNNNNGGC	1 cut(s)	255
BglII	AGATCT	2 cut(s)	25, 274
BisI	GCNGC	1 cut(s)	125
BlsI	GCNGC	1 cut(s)	126
Bme1390I	CCNGG	1 cut(s)	332
Bme18I	GGWCC	2 cut(s)	90, 201
BmgBI	CACGTC	1 cut(s)	148
BmgT120I	GGNCC	2 cut(s)	90, 201
BmiI	GGNNCC	2 cut(s)	91, 92
BmrFI	CCNGG	1 cut(s)	332
BmsI	GCATC	1 cut(s)	219
BpmI	CTGGAG	1 cut(s)	197
BsaHI	GRCGYC	3 cut(s)	5, 122, 441
BsaJI	CCNNGG	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	332
BseDI	CCNNGG	1 cut(s)	197
BseGI	GGATG	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	214
BseRI	GAGGAG	1 cut(s)	281
Bsh1236I	CGCG	2 cut(s)	247, 296
Bsh1285I	CGRYCG	1 cut(s)	208
BshFI	GGCC	1 cut(s)	258
BsiEI	CGRYCG	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	308
BslFI	GGGAC	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	113
BsmBI	CGTCTC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	76
BsnI	GGCC	1 cut(s)	258
Bsp1407I	TGTACA	1 cut(s)	150
Bsp143I	GATC	6 cut(s)	25, 66, 162, 205, 274, 297
Bsp68I	TCGCGA	1 cut(s)	296
BspACI	CCGC	3 cut(s)	116, 125, 405
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	1 cut(s)	284
BspFNI	CGCG	2 cut(s)	247, 296
BspLI	GGNNCC	2 cut(s)	91, 92
BsrGI	TGTACA	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	197
BssMI	GATC	6 cut(s)	25, 66, 162, 205, 274, 297
BssNI	GRCGYC	3 cut(s)	5, 122, 441
BssT1I	CCWWGG	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	332
Bst4CI	ACNGT	2 cut(s)	191, 347
BstACI	GRCGYC	3 cut(s)	5, 122, 441
BstAUI	TGTACA	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	38
BstDEI	CTNAG	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	210
BstFNI	CGCG	2 cut(s)	247, 296
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	6 cut(s)	28, 69, 165, 208, 277, 300
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	6 cut(s)	25, 66, 162, 205, 274, 297
BstMCI	CGRYCG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 46, 255
BstNI	CCWGG	1 cut(s)	332
BstNSI	RCATGY	1 cut(s)	325
BstSCI	CCNGG	1 cut(s)	330
BstSFI	CTRYAG	1 cut(s)	343
BstUI	CGCG	2 cut(s)	247, 296
BstX2I	RGATCY	2 cut(s)	25, 274
BstYI	RGATCY	2 cut(s)	25, 274
BsuRI	GGCC	1 cut(s)	258
BtgZI	GCGATG	1 cut(s)	384
BtrI	CACGTC	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	210
BtuMI	TCGCGA	1 cut(s)	296
Cac8I	GCNNGC	1 cut(s)	38
CfoI	GCGC	1 cut(s)	249
Cfr13I	GGNCC	2 cut(s)	90, 201
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	3 cut(s)	151, 238, 303
CviAII	CATG	2 cut(s)	64, 322
CviJI	RGCY	5 cut(s)	14, 109, 140, 258, 363
CviKI_1	RGCY	5 cut(s)	14, 109, 140, 258, 363
CviQI	GTAC	3 cut(s)	151, 238, 303
DdeI	CTNAG	1 cut(s)	271
DpnI	GATC	6 cut(s)	27, 68, 164, 207, 276, 299
DpnII	GATC	6 cut(s)	25, 66, 162, 205, 274, 297
DrdI	GACNNNNNNGTC	1 cut(s)	422
DseDI	GACNNNNNNGTC	1 cut(s)	422
EciI	GGCGGA	2 cut(s)	131, 420
Eco130I	CCWWGG	1 cut(s)	197
Eco147I	AGGCCT	1 cut(s)	258
Eco47I	GGWCC	2 cut(s)	90, 201
EcoO109I	RGGNCCY	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	330
EcoT14I	CCWWGG	1 cut(s)	197
EcoT22I	ATGCAT	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	197
Esp3I	CGTCTC	1 cut(s)	113
FaeI	CATG	2 cut(s)	67, 325
FaiI	YATR	4 cut(s)	61, 65, 323, 366
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	2 cut(s)	63, 321
Fnu4HI	GCNGC	1 cut(s)	125
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	1 cut(s)	125
FspBI	CTAG	3 cut(s)	137, 143, 448
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	1 cut(s)	125
GsuI	CTGGAG	1 cut(s)	197
HaeIII	GGCC	1 cut(s)	258
HapII	CCGG	1 cut(s)	308
HgaI	GACGC	1 cut(s)	130
HhaI	GCGC	1 cut(s)	249
Hin1I	GRCGYC	3 cut(s)	5, 122, 441
Hin1II	CATG	2 cut(s)	67, 325
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	4 cut(s)	72, 133, 179, 242
HpaII	CCGG	1 cut(s)	308
Hpy166II	GTNNAC	2 cut(s)	151, 436
Hpy188I	TCNGA	6 cut(s)	71, 77, 187, 205, 274, 279
Hpy188III	TCNNGA	3 cut(s)	29, 265, 295
Hpy8I	GTNNAC	2 cut(s)	151, 436
Hpy99I	CGWCG	2 cut(s)	10, 443
HpyAV	CCTTC	2 cut(s)	248, 371
HpyCH4III	ACNGT	2 cut(s)	191, 347
HpyCH4IV	ACGT	2 cut(s)	147, 441
HpyCH4V	TGCA	2 cut(s)	63, 325
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 46, 255
HpyF3I	CTNAG	1 cut(s)	271
HpySE526I	ACGT	2 cut(s)	147, 441
Hsp92I	GRCGYC	3 cut(s)	5, 122, 441
Hsp92II	CATG	2 cut(s)	67, 325
HspAI	GCGC	1 cut(s)	247
KflI	GGGWCCC	1 cut(s)	90
Kzo9I	GATC	6 cut(s)	25, 66, 162, 205, 274, 297
LpnPI	CCDG	6 cut(s)	14, 161, 227, 317, 321, 344
LweI	GCATC	1 cut(s)	219
MaeI	CTAG	3 cut(s)	137, 143, 448
MaeII	ACGT	2 cut(s)	147, 441
MaeIII	GTNAC	1 cut(s)	347
MalI	GATC	6 cut(s)	27, 68, 164, 207, 276, 299
MboI	GATC	6 cut(s)	25, 66, 162, 205, 274, 297
MflI	RGATCY	2 cut(s)	25, 274
MluCI	AATT	1 cut(s)	381
MlyI	GAGTC	3 cut(s)	81, 188, 236
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	9 cut(s)	71, 107, 260, 269, 280, 302, 386, 395, 440
Mph1103I	ATGCAT	1 cut(s)	65
MseI	TTAA	1 cut(s)	227
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	332
MvaI	CCWGG	1 cut(s)	332
MvnI	CGCG	2 cut(s)	247, 296
MwoI	GCNNNNNNNGC	3 cut(s)	11, 46, 255
NdeII	GATC	6 cut(s)	25, 66, 162, 205, 274, 297
NlaIII	CATG	2 cut(s)	67, 325
NlaIV	GGNNCC	2 cut(s)	91, 92
NruI	TCGCGA	1 cut(s)	296
NsiI	ATGCAT	1 cut(s)	65
NspI	RCATGY	1 cut(s)	325
PceI	AGGCCT	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	133
PfoI	TCCNGGA	1 cut(s)	330
PkrI	GCNGC	1 cut(s)	126
Ple19I	CGATCG	1 cut(s)	208
PleI	GAGTC	3 cut(s)	80, 187, 236
PpsI	GAGTC	3 cut(s)	80, 187, 236
PpuMI	RGGWCCY	1 cut(s)	90
Psp5II	RGGWCCY	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	330
PspN4I	GGNNCC	2 cut(s)	91, 92
PspPI	GGNCC	2 cut(s)	90, 201
PspPPI	RGGWCCY	1 cut(s)	90
PsuI	RGATCY	2 cut(s)	25, 274
PvuI	CGATCG	1 cut(s)	208
RruI	TCGCGA	1 cut(s)	296
RsaI	GTAC	3 cut(s)	152, 239, 304
RsaNI	GTAC	3 cut(s)	151, 238, 303
SaqAI	TTAA	1 cut(s)	227
SatI	GCNGC	1 cut(s)	125
Sau3AI	GATC	6 cut(s)	25, 66, 162, 205, 274, 297
Sau96I	GGNCC	2 cut(s)	90, 201
SchI	GAGTC	3 cut(s)	81, 188, 236
ScrFI	CCNGG	1 cut(s)	332
SetI	ASST	5 cut(s)	99, 111, 150, 272, 444
SfaNI	GCATC	1 cut(s)	219
SfcI	CTRYAG	1 cut(s)	343
SinI	GGWCC	2 cut(s)	90, 201
Sse9I	AATT	1 cut(s)	381
SseBI	AGGCCT	1 cut(s)	258
SsiI	CCGC	3 cut(s)	116, 125, 405
SspMI	CTAG	3 cut(s)	137, 143, 448
StuI	AGGCCT	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	330
StyI	CCWWGG	1 cut(s)	197
TaaI	ACNGT	2 cut(s)	191, 347
TaiI	ACGT	2 cut(s)	150, 444
TaqI	TCGA	1 cut(s)	252
TasI	AATT	1 cut(s)	381
TatI	WGTACW	2 cut(s)	150, 302
TauI	GCSGC	1 cut(s)	127
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TspDTI	ATGAA	1 cut(s)	73
VpaK11BI	GGWCC	2 cut(s)	90, 201
XceI	RCATGY	1 cut(s)	325
XspI	CTAG	3 cut(s)	137, 143, 448
ZraI	GACGTC	1 cut(s)	442
Zsp2I	ATGCAT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.