Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003128

Physical Location & Seq

Genomic Coordinates Reverse (-)

22340755 .. 22365718

Gene Structure 24964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG192800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGACGATATGCATGATCGGAGTCGGAGGGTTCATTGGGTCCCACCTCTGCGAGAAGCTGATGGCGGAGACGCCGCACAAGATTCTAGCCCTAGACGTGTACAATGACAAGATCAAGCACTTGCTGGAGCCGTCAGACGGATATTATTTGGGCAGAAGCACATCAGAAGAGTTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009987 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0036094 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048037 GO:0048040 GO:0048046 GO:0050662 GO:0051287 GO:0055086 GO:0071704 GO:0097159 GO:1901135 GO:1901137 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Epimerase

Protein Analysis

59

Amino Acids

6.57

Weight (kDa)

5.4

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08200
fragaria_vesca	FvH4_3g30060 FvH4_3g30060 FvH4_3g30060 FvH4_3g30060
malus_domestica	MD03G1131500.v1.1 MD03G1131900.v1.1 MD03G1161900.v1.1 MD11G1154500.v1.1 MD11G1215900.v1.1 MD16G1216600.v1.1 MD16G1216800.v1.1
prunus_persica	Prupe.6G116900_v2.0.a1 Prupe.6G116900_v2.0.a1 Prupe.6G116900_v2.0.a1
pyrus_communis	pycom11g12600 pycom11g12610
rosa_chinensis	RchiOBHm_Chr5g0055821
rosa_laevigata	RLG00000002609 RLG00000035011
rosa_multiflora	Rmu_sc0003306.1_g000005 Rmu_sc0003500.1_g000032 Rmu_sc0003500.1_g000033 Rmu_sc0007802.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024520 Rroxscaffold_1G00052150
rosa_rugosa	Rorug05G0295000
rosa_samantha	Rh5AG192800 Rh5AG365900 Rh5BG190400 Rh5BG376600 Rh5CG399600 Rh5DG192100 Rh5DG389500 Rh5DG389600 Rh7BG106200
rosa_wichuraiana	Rw5G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	65, 74
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	1 cut(s)	137
AflIII	ACRYGT	1 cut(s)	96
AjiI	CACGTC	1 cut(s)	97
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
Alw26I	GTCTC	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	39
BccI	CCATC	1 cut(s)	55
BceAI	ACGGC	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	2 cut(s)	86, 92
BisI	GCNGC	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	75
Bme18I	GGWCC	1 cut(s)	39
BmgBI	CACGTC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	39
BmiI	GGNNCC	3 cut(s)	40, 41, 129
BpmI	CTGGAG	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
BseLI	CCNNNNNNNGG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	62
BsmBI	CGTCTC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	25
Bsp1407I	TGTACA	1 cut(s)	99
Bsp143I	GATC	2 cut(s)	15, 111
BspACI	CCGC	2 cut(s)	65, 74
BspLI	GGNNCC	3 cut(s)	40, 41, 129
BsrGI	TGTACA	1 cut(s)	99
BssMI	GATC	2 cut(s)	15, 111
BssNI	GRCGYC	1 cut(s)	71
Bst6I	CTCTTC	1 cut(s)	162
BstACI	GRCGYC	1 cut(s)	71
BstAUI	TGTACA	1 cut(s)	99
BstKTI	GATC	2 cut(s)	18, 114
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	2 cut(s)	15, 111
BtrI	CACGTC	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	39
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	3 cut(s)	58, 89, 130
CviKI_1	RGCY	3 cut(s)	58, 89, 130
CviQI	GTAC	1 cut(s)	100
DpnI	GATC	2 cut(s)	17, 113
DpnII	GATC	2 cut(s)	15, 111
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
EciI	GGCGGA	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	39
EcoO109I	RGGNCCY	1 cut(s)	39
EcoT22I	ATGCAT	1 cut(s)	14
Esp3I	CGTCTC	1 cut(s)	62
FaeI	CATG	1 cut(s)	16
FaiI	YATR	2 cut(s)	10, 14
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	74
Fsp4HI	GCNGC	1 cut(s)	74
FspBI	CTAG	2 cut(s)	86, 92
GluI	GCNGC	1 cut(s)	74
GsuI	CTGGAG	1 cut(s)	146
HgaI	GACGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	1 cut(s)	16
HinfI	GANTC	2 cut(s)	21, 82
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	4 cut(s)	20, 26, 136, 166
Hpy8I	GTNNAC	1 cut(s)	100
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	1 cut(s)	12
HpySE526I	ACGT	1 cut(s)	96
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	1 cut(s)	16
KflI	GGGWCCC	1 cut(s)	39
Kzo9I	GATC	2 cut(s)	15, 111
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	1 cut(s)	110
MaeI	CTAG	2 cut(s)	86, 92
MaeII	ACGT	1 cut(s)	96
MalI	GATC	2 cut(s)	17, 113
MboI	GATC	2 cut(s)	15, 111
MboII	GAAGA	1 cut(s)	179
MlyI	GAGTC	1 cut(s)	30
MmeI	TCCRAC	1 cut(s)	4
MnlI	CCTC	2 cut(s)	20, 56
Mph1103I	ATGCAT	1 cut(s)	14
NdeII	GATC	2 cut(s)	15, 111
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	3 cut(s)	40, 41, 129
NsiI	ATGCAT	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	75
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
PpuMI	RGGWCCY	1 cut(s)	39
Psp5II	RGGWCCY	1 cut(s)	39
PspN4I	GGNNCC	3 cut(s)	40, 41, 129
PspPI	GGNCC	1 cut(s)	39
PspPPI	RGGWCCY	1 cut(s)	39
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SatI	GCNGC	1 cut(s)	74
Sau3AI	GATC	2 cut(s)	15, 111
Sau96I	GGNCC	1 cut(s)	39
SchI	GAGTC	1 cut(s)	30
SetI	ASST	3 cut(s)	48, 60, 99
SinI	GGWCC	1 cut(s)	39
SsiI	CCGC	2 cut(s)	65, 74
SspMI	CTAG	2 cut(s)	86, 92
TaiI	ACGT	1 cut(s)	99
TatI	WGTACW	1 cut(s)	99
TauI	GCSGC	1 cut(s)	76
TfiI	GAWTC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	22
TspGWI	ACGGA	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	39
XspI	CTAG	2 cut(s)	86, 92
Zsp2I	ATGCAT	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.