Prupe.6G116900_v2.0.a1

UDP-D-apiose UDP-D-xylose synthase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
8545867 .. 8549695
3829 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G116900.3

Sequence Viewer

Length: 1173 bp
ATGGCGTCGGTGGCTCGAGTAGATCTAGACGGCAACCCAATAAAGCCGATAACGATATGCATGATCGGAGCAGGAGGCTTCATTGGGTCCCATCTCTGCGAGAAGCTGATGTCAGAGACCCCACACAAGGTTCTAGCTTTGGACGTCTATAATGACAAGATCAAGCACCTTCTTGAGCCCGAAAACGCGCATCCATGGTCCGATCGAATCCAGTTCCACCGACTCAACATCAAGCAAGACTCGCGCCTCGAAGGCCTCATCAAGATGGCAGATCTGACCATTAATCTCGCCGCGATTTGTACTCCGGCGGACTACAACACTCGCCCACTCGACACCATCTACAGCAACTTCATTGACGCTTTGCCTGTGGTGAAATACTGTTCGGAAAACAACAAGCGGTTGATTCACTTTTCTACTTGTGAAGTGTATGGGAAAACCATTGGAAGCTATCTTCCTAAAGATAGCCCTCTTCGTCAGGATCCTGCATATTATGTGCTTAAAGAAGATGAATCCCCCTGCATTTTTGGCTCTATTGAGAAGCAGAGATGGTCTTATGCATGTGCAAAGCAATTGATCGAGAGGCTGATTTATGCTGAGGGTGCGGAAAATGGTCTTGAGTTTACCATTGTGAGACCCTTCAACTGGATTGGACCTAGAATGGATTTCATTCCTGGGATTGACGGCCCAAGTGAGGGTGTTCCAAGAGTTCTAGCCTGCTTTAGTAATAATCTTCTTCGACGTGAGCCACTCAAGCTTGTAGATGGTGGCCAATCCCAGAGAACTTTTGTGTACATAAAGGATGCTATTGAAGCTGTTATGTTGATGATTGAAAATCCTGCTAGGGCCAATGGCCACATTTTCAATGTTGGCAACCCTAACAATGAAGTTACCGTCAGGCAGCTTGGTGAAATGATGACTGAGGTCTATGTTAAGGTAAGTGGTGAATCAAAACTGGAGACACCAACCATCGATGTAAGCTCTCAAGAATTCTATGGAGTGGGATATGATGATAGTGACAAGAGAATTCCTGACATGACTATTATCAATAAGCAGCTTGGCTGGAACCCGAAGACTTCGCTATGGGACCTGCTTGAATCAACCCTCACCTATCAGCATAGGACATATGCCGAAGCTGTCAAGAAGGCCATCTCCCAAGCATCTGCTACAAGCTAA

Protein Analysis

391

Amino Acids

43.83

Weight (kDa)

5.71

Isoelectric Point (pI)

46.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 147
Acc36I ACCTGC 1 cut(s) 1095
AccII CGCG 3 cut(s) 188, 244, 293
AciI CCGC 4 cut(s) 291, 308, 397, 602
AclWI GGATC 2 cut(s) 473, 486
AcoI YGGCCR 2 cut(s) 766, 850
AcsI RAATTY 2 cut(s) 986, 1023
AcyI GRCGYC 2 cut(s) 5, 144
AfaI GTAC 2 cut(s) 301, 791
AfiI CCNNNNNNNGG 4 cut(s) 127, 642, 691, 692
AgsI TTSAA 5 cut(s) 640, 809, 830, 862, 1094
AjiI CACGTC 1 cut(s) 740
AjnI CCWGG 1 cut(s) 670
Alw26I GTCTC 3 cut(s) 110, 625, 950
AlwI GGATC 2 cut(s) 473, 486
Ama87I CYCGRG 1 cut(s) 15
AoxI GGCC 6 cut(s) 253, 682, 766, 843, 850, 1143
ApeKI GCWGC 2 cut(s) 898, 1051
ApoI RAATTY 2 cut(s) 986, 1023
AseI ATTAAT 1 cut(s) 282
AspLEI GCGC 2 cut(s) 190, 246
AspS9I GGNCC 6 cut(s) 87, 198, 650, 683, 843, 1084
AsuHPI GGTGA 4 cut(s) 382, 917, 953, 1096
AvaI CYCGRG 1 cut(s) 15
AvaII GGWCC 4 cut(s) 87, 198, 650, 1084
BalI TGGCCA 2 cut(s) 768, 852
BamHI GGATCC 1 cut(s) 478
BanII GRGCYC 1 cut(s) 180
BbsI GAAGAC 1 cut(s) 1076
BbvCI CCTCAGC 1 cut(s) 594
BbvI GCAGC 2 cut(s) 910, 1063
BccI CCATC 7 cut(s) 99, 259, 344, 540, 755, 974, 1154
BceAI ACGGC 2 cut(s) 46, 697
BciT130I CCWGG 1 cut(s) 672
BcoDI GTCTC 3 cut(s) 110, 625, 950
BfaI CTAG 5 cut(s) 26, 134, 654, 710, 840
BfmI CTRYAG 1 cut(s) 340
BfuAI ACCTGC 1 cut(s) 1095
BglI GCCNNNNNGGC 1 cut(s) 252
BglII AGATCT 2 cut(s) 22, 271
BisI GCNGC 3 cut(s) 291, 899, 1052
BlsI GCNGC 3 cut(s) 292, 900, 1053
Bme1390I CCNGG 1 cut(s) 672
Bme18I GGWCC 4 cut(s) 87, 198, 650, 1084
BmeT110I CYCGRG 1 cut(s) 15
BmgBI CACGTC 1 cut(s) 740
BmgT120I GGNCC 6 cut(s) 87, 198, 650, 683, 843, 1084
BmiI GGNNCC 5 cut(s) 88, 89, 480, 1064, 1085
BmrFI CCNGG 1 cut(s) 672
BmsI GCATC 3 cut(s) 199, 790, 1166
BoxI GACNNNNGTC 1 cut(s) 920
BpiI GAAGAC 1 cut(s) 1076
BpmI CTGGAG 1 cut(s) 974
Bpu10I CCTNAGC 1 cut(s) 594
BpuEI CTTGAG 4 cut(s) 194, 635, 734, 966
Bsa29I ATCGAT 1 cut(s) 969
BsaHI GRCGYC 2 cut(s) 5, 144
BsaI GGTCTC 2 cut(s) 110, 625
BsaJI CCNNGG 2 cut(s) 194, 671
Bsc4I CCNNNNNNNGG 4 cut(s) 127, 642, 691, 692
Bse1I ACTGG 3 cut(s) 211, 647, 957
BseBI CCWGG 1 cut(s) 672
BseCI ATCGAT 1 cut(s) 969
BseDI CCNNGG 2 cut(s) 194, 671
BseGI GGATG 2 cut(s) 190, 805
BseLI CCNNNNNNNGG 4 cut(s) 127, 642, 691, 692
BseMII CTCAG 2 cut(s) 585, 909
BseNI ACTGG 3 cut(s) 211, 647, 957
BseXI GCAGC 2 cut(s) 910, 1063
Bsh1236I CGCG 3 cut(s) 188, 244, 293
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 6 cut(s) 255, 684, 768, 845, 852, 1145
BshVI ATCGAT 1 cut(s) 969
BsiEI CGRYCG 1 cut(s) 205
BsiHKCI CYCGRG 1 cut(s) 15
BsiSI CCGG 1 cut(s) 305
BslFI GGGAC 2 cut(s) 73, 1097
BslI CCNNNNNNNGG 4 cut(s) 127, 642, 691, 692
BsmAI GTCTC 3 cut(s) 110, 625, 950
BsmFI GGGAC 2 cut(s) 73, 1097
BsnI GGCC 6 cut(s) 255, 684, 768, 845, 852, 1145
Bso31I GGTCTC 2 cut(s) 110, 625
BsoBI CYCGRG 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 180
Bsp1407I TGTACA 1 cut(s) 789
Bsp143I GATC 7 cut(s) 22, 63, 159, 202, 271, 478, 573
Bsp19I CCATGG 1 cut(s) 194
BspACI CCGC 4 cut(s) 291, 308, 397, 602
BspANI GGCC 6 cut(s) 255, 684, 768, 845, 852, 1145
BspCNI CTCAG 2 cut(s) 586, 910
BspDI ATCGAT 1 cut(s) 969
BspFNI CGCG 3 cut(s) 188, 244, 293
BspLI GGNNCC 5 cut(s) 88, 89, 480, 1064, 1085
BspMI ACCTGC 1 cut(s) 1095
BspPI GGATC 2 cut(s) 473, 486
BspTNI GGTCTC 2 cut(s) 110, 625
BsrGI TGTACA 1 cut(s) 789
BsrI ACTGG 3 cut(s) 211, 647, 957
BssECI CCNNGG 2 cut(s) 194, 671
BssMI GATC 7 cut(s) 22, 63, 159, 202, 271, 478, 573
BssNI GRCGYC 2 cut(s) 5, 144
BssT1I CCWWGG 1 cut(s) 194
Bst2UI CCWGG 1 cut(s) 672
Bst4CI ACNGT 2 cut(s) 380, 892
Bst6I CTCTTC 1 cut(s) 474
BstACI GRCGYC 2 cut(s) 5, 144
BstAUI TGTACA 1 cut(s) 789
BstC8I GCNNGC 1 cut(s) 715
BstDEI CTNAG 2 cut(s) 594, 918
BstDSI CCRYGG 1 cut(s) 194
BstF5I GGATG 2 cut(s) 190, 805
BstFNI CGCG 3 cut(s) 188, 244, 293
BstHHI GCGC 2 cut(s) 190, 246
BstKTI GATC 7 cut(s) 25, 66, 162, 205, 274, 481, 576
BstMAI GTCTC 3 cut(s) 110, 625, 950
BstMBI GATC 7 cut(s) 22, 63, 159, 202, 271, 478, 573
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 7 cut(s) 11, 241, 252, 525, 599, 751, 809
BstNI CCWGG 1 cut(s) 672
BstNSI RCATGY 1 cut(s) 561
BstPAI GACNNNNGTC 1 cut(s) 920
BstSCI CCNGG 1 cut(s) 670
BstSFI CTRYAG 1 cut(s) 340
BstUI CGCG 3 cut(s) 188, 244, 293
BstV1I GCAGC 2 cut(s) 910, 1063
BstV2I GAAGAC 1 cut(s) 1076
BstX2I RGATCY 3 cut(s) 22, 271, 478
BstYI RGATCY 3 cut(s) 22, 271, 478
Bsu15I ATCGAT 1 cut(s) 969
BsuRI GGCC 6 cut(s) 255, 684, 768, 845, 852, 1145
BsuTUI ATCGAT 1 cut(s) 969
BtgI CCRYGG 1 cut(s) 194
BtrI CACGTC 1 cut(s) 740
BtsCI GGATG 2 cut(s) 190, 805
BveI ACCTGC 1 cut(s) 1095
Cac8I GCNNGC 1 cut(s) 715
CfoI GCGC 2 cut(s) 190, 246
Cfr13I GGNCC 6 cut(s) 87, 198, 650, 683, 843, 1084
ClaI ATCGAT 1 cut(s) 969
CseI GACGC 1 cut(s) 365
Csp6I GTAC 2 cut(s) 300, 790
CviAII CATG 4 cut(s) 61, 195, 558, 1033
CviQI GTAC 2 cut(s) 300, 790
DdeI CTNAG 2 cut(s) 594, 918
DpnI GATC 7 cut(s) 24, 65, 161, 204, 273, 480, 575
DpnII GATC 7 cut(s) 22, 63, 159, 202, 271, 478, 573
EaeI YGGCCR 2 cut(s) 766, 850
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
EciI GGCGGA 1 cut(s) 323
Eco130I CCWWGG 1 cut(s) 194
Eco147I AGGCCT 1 cut(s) 255
Eco24I GRGCYC 1 cut(s) 180
Eco31I GGTCTC 2 cut(s) 110, 625
Eco47I GGWCC 4 cut(s) 87, 198, 650, 1084
Eco88I CYCGRG 1 cut(s) 15
EcoO109I RGGNCCY 2 cut(s) 87, 1084
EcoRI GAATTC 2 cut(s) 986, 1023
EcoRII CCWGG 1 cut(s) 670
EcoT14I CCWWGG 1 cut(s) 194
EcoT22I ATGCAT 2 cut(s) 62, 559
EcoT38I GRGCYC 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 4 cut(s) 64, 198, 561, 1036
FaqI GGGAC 2 cut(s) 73, 1097
FatI CATG 4 cut(s) 60, 194, 557, 1032
FauNDI CATATG 1 cut(s) 1123
Fnu4HI GCNGC 3 cut(s) 291, 899, 1052
FokI GGATG 2 cut(s) 177, 812
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 3 cut(s) 291, 899, 1052
FspBI CTAG 5 cut(s) 26, 134, 654, 710, 840
GlaI GCGC 2 cut(s) 189, 245
GluI GCNGC 3 cut(s) 291, 899, 1052
GsuI CTGGAG 1 cut(s) 974
HaeIII GGCC 6 cut(s) 255, 684, 768, 845, 852, 1145
HapII CCGG 1 cut(s) 305
HgaI GACGC 1 cut(s) 365
HhaI GCGC 2 cut(s) 190, 246
Hin1I GRCGYC 2 cut(s) 5, 144
Hin1II CATG 4 cut(s) 64, 198, 561, 1036
Hin6I GCGC 2 cut(s) 188, 244
HinP1I GCGC 2 cut(s) 188, 244
HindIII AAGCTT 1 cut(s) 752
HinfI GANTC 7 cut(s) 207, 222, 239, 403, 509, 944, 1094
HpaII CCGG 1 cut(s) 305
HphI GGTGA 4 cut(s) 382, 917, 953, 1096
Hpy166II GTNNAC 2 cut(s) 621, 790
Hpy188I TCNGA 5 cut(s) 68, 115, 202, 276, 385
Hpy188III TCNNGA 9 cut(s) 26, 173, 262, 476, 577, 614, 983, 1028, 1138
Hpy8I GTNNAC 2 cut(s) 621, 790
Hpy99I CGWCG 2 cut(s) 10, 741
HpyAV CCTTC 4 cut(s) 179, 245, 646, 1135
HpyCH4III ACNGT 2 cut(s) 380, 892
HpyCH4IV ACGT 2 cut(s) 144, 739
HpyCH4V TGCA 5 cut(s) 60, 485, 519, 557, 563
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 241, 252, 525, 599, 751, 809
HpyF3I CTNAG 2 cut(s) 594, 918
HpySE526I ACGT 2 cut(s) 144, 739
Hsp92I GRCGYC 2 cut(s) 5, 144
Hsp92II CATG 4 cut(s) 64, 198, 561, 1036
HspAI GCGC 2 cut(s) 188, 244
KflI GGGWCCC 1 cut(s) 87
Kzo9I GATC 7 cut(s) 22, 63, 159, 202, 271, 478, 573
LmnI GCTCC 1 cut(s) 68
Lsp1109I GCAGC 2 cut(s) 910, 1063
LweI GCATC 3 cut(s) 199, 790, 1166
MaeI CTAG 5 cut(s) 26, 134, 654, 710, 840
MaeII ACGT 2 cut(s) 144, 739
MaeIII GTNAC 2 cut(s) 886, 1013
MalI GATC 7 cut(s) 24, 65, 161, 204, 273, 480, 575
MboI GATC 7 cut(s) 22, 63, 159, 202, 271, 478, 573
MboII GAAGA 6 cut(s) 443, 461, 515, 722, 725, 1081
MfeI CAATTG 1 cut(s) 569
MflI RGATCY 3 cut(s) 22, 271, 478
MhlI GDGCHC 1 cut(s) 180
MlsI TGGCCA 2 cut(s) 768, 852
MluCI AATT 3 cut(s) 569, 986, 1023
MluNI TGGCCA 2 cut(s) 768, 852
MlyI GAGTC 2 cut(s) 216, 233
MnlI CCTC 9 cut(s) 68, 257, 266, 477, 573, 589, 685, 913, 1112
Mox20I TGGCCA 2 cut(s) 768, 852
Mph1103I ATGCAT 2 cut(s) 62, 559
MscI TGGCCA 2 cut(s) 768, 852
MseI TTAA 3 cut(s) 282, 498, 930
MslI CAYNNNNRTG 1 cut(s) 263
Msp20I TGGCCA 2 cut(s) 768, 852
MspI CCGG 1 cut(s) 305
MspR9I CCNGG 1 cut(s) 672
MunI CAATTG 1 cut(s) 569
MvaI CCWGG 1 cut(s) 672
MvnI CGCG 3 cut(s) 188, 244, 293
MwoI GCNNNNNNNGC 7 cut(s) 11, 241, 252, 525, 599, 751, 809
NcoI CCATGG 1 cut(s) 194
NdeI CATATG 1 cut(s) 1123
NdeII GATC 7 cut(s) 22, 63, 159, 202, 271, 478, 573
NlaIII CATG 4 cut(s) 64, 198, 561, 1036
NlaIV GGNNCC 5 cut(s) 88, 89, 480, 1064, 1085
NmuCI GTSAC 1 cut(s) 1013
NsiI ATGCAT 2 cut(s) 62, 559
NspI RCATGY 1 cut(s) 561
PaeR7I CTCGAG 1 cut(s) 15
PceI AGGCCT 1 cut(s) 255
PfeI GAWTC 5 cut(s) 207, 403, 509, 944, 1094
PkrI GCNGC 3 cut(s) 292, 900, 1053
Ple19I CGATCG 1 cut(s) 205
PleI GAGTC 2 cut(s) 216, 233
PpsI GAGTC 2 cut(s) 216, 233
PpuMI RGGWCCY 2 cut(s) 87, 1084
PshAI GACNNNNGTC 1 cut(s) 920
PshBI ATTAAT 1 cut(s) 282
Psp5II RGGWCCY 2 cut(s) 87, 1084
Psp6I CCWGG 1 cut(s) 670
PspGI CCWGG 1 cut(s) 670
PspN4I GGNNCC 5 cut(s) 88, 89, 480, 1064, 1085
PspPI GGNCC 6 cut(s) 87, 198, 650, 683, 843, 1084
PspPPI RGGWCCY 2 cut(s) 87, 1084
PspXI VCTCGAGB 1 cut(s) 15
PsuI RGATCY 3 cut(s) 22, 271, 478
PvuI CGATCG 1 cut(s) 205
RsaI GTAC 2 cut(s) 301, 791
RsaNI GTAC 2 cut(s) 300, 790
RseI CAYNNNNRTG 1 cut(s) 263
SaqAI TTAA 3 cut(s) 282, 498, 930
SatI GCNGC 3 cut(s) 291, 899, 1052
Sau3AI GATC 7 cut(s) 22, 63, 159, 202, 271, 478, 573
Sau96I GGNCC 6 cut(s) 87, 198, 650, 683, 843, 1084
SchI GAGTC 2 cut(s) 216, 233
ScrFI CCNGG 1 cut(s) 672
SduI GDGCHC 1 cut(s) 180
SfaNI GCATC 3 cut(s) 199, 790, 1166
SfcI CTRYAG 1 cut(s) 340
Sfr274I CTCGAG 1 cut(s) 15
SinI GGWCC 4 cut(s) 87, 198, 650, 1084
SlaI CTCGAG 1 cut(s) 15
SmiMI CAYNNNNRTG 1 cut(s) 263
SmlI CTYRAG 5 cut(s) 15, 173, 614, 749, 981
SmoI CTYRAG 5 cut(s) 15, 173, 614, 749, 981
Sse9I AATT 3 cut(s) 569, 986, 1023
SseBI AGGCCT 1 cut(s) 255
SsiI CCGC 4 cut(s) 291, 308, 397, 602
SspMI CTAG 5 cut(s) 26, 134, 654, 710, 840
StuI AGGCCT 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 670
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 2 cut(s) 380, 892
TaiI ACGT 2 cut(s) 147, 742
TaqI TCGA 7 cut(s) 16, 205, 249, 330, 576, 736, 969
TasI AATT 3 cut(s) 569, 986, 1023
TatI WGTACW 2 cut(s) 299, 789
TauI GCSGC 1 cut(s) 293
TfiI GAWTC 5 cut(s) 207, 403, 509, 944, 1094
Tru1I TTAA 3 cut(s) 282, 498, 930
Tru9I TTAA 3 cut(s) 282, 498, 930
TseFI GTSAC 1 cut(s) 1013
TseI GCWGC 2 cut(s) 898, 1051
Tsp45I GTSAC 1 cut(s) 1013
TspDTI ATGAA 5 cut(s) 70, 340, 522, 655, 897
VpaK11BI GGWCC 4 cut(s) 87, 198, 650, 1084
VspI ATTAAT 1 cut(s) 282
XapI RAATTY 2 cut(s) 986, 1023
XbaI TCTAGA 1 cut(s) 25
XceI RCATGY 1 cut(s) 561
XhoI CTCGAG 1 cut(s) 15
XspI CTAG 5 cut(s) 26, 134, 654, 710, 840
ZraI GACGTC 1 cut(s) 145
Zsp2I ATGCAT 2 cut(s) 62, 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.