Rh5CG399600

UDP-D-apiose UDP-D-xylose synthase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
53196364 .. 53199928
3565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG399600.1

Sequence Viewer

Length: 990 bp
ATGGCGTCGGCGGCGGGGAGAGTAGATCTGGACGGCAAGCCGATAAAGCCGATGACGATATGCATGATCGGAGCCGGAGGGTTCATTGGGTCCCACCTCTGCGAGAAGCTGATGGCGGAGACGCCGCACAAGGTTCTAGCCCTAGACGTGTACAATGACAAGATCAAGCACCTGCTGGAGCCATCGGACGGTCATCCTTGGTCCGATCGCATCCAGTTCCACCGCCTCAACATCAAGCACGACTCGCGCCTCGAAGGCCTCATCAAGACCTCAGATCTGACCATCAATCTCGCCGCGATCTGTACTCCGGCCGACTACAACACGCGCCCGCTGGACACTATCTACAGTAACTTCATCGATGCCTTGCCTGTGGTGAAGTACTGTTCTGAAAACAACAAGCGCTTGATTCACTTTTCGACTTGTGAAGTGTATGGGAAGACCATTGGAAGCTTTCTTCCTAAAGATAGCCCTCTTCGTCAGGATCCTGCATATTATCTGCTTAAAGAAGATGATTCCCCTTGCATCTTTGGGTCTATTGAGAAGCAGAGGTGGTCATATGCATGTGCAAAGCAATTGATCGAGAGGCTGATATATGCTGAGGGTGCAGAAAATGGTCTTGAGTTTACCATTGTAAGACCCTTTAACTGGATTGGACCTAGGATGGATTTCATTCCTGGGATTGATGGCCCAAGTGAGGGTGTTCCAAGAGTTCTAGCATGCTTTAGTAATAATCTTCTTCGTCGTGAACCACTCAAGCTTGTAGACGGTGGTGAATCCCAAAGAACTTTTGTTTATATAAAGGATGCTATTGATGCCGTTATGTTGATGATTGAAAATCCTGCTAGGGCCAATGGTCACATTTTCAATGTGGGCAACCCCAACAATGAAGTCACAGTTAGGCAGCTTGGTGAAATGATGACTGAGGTGATTATTTTACTTGTTAGAAAATCAAGCTGCAGTAGCAGTCCTGCATTGATTTTATTGGATTGA

Protein Analysis

329

Amino Acids

36.71

Weight (kDa)

6.09

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 20 - 291 2.1e-47 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 21 - 140 5e-06 Polysaccharide biosynthesis protein
3Beta_HSD PF01073 22 - 146 4e-06 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 24 - 304 5.1e-21 GDP-mannose 4,6 dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 180
Acc36I ACCTGC 1 cut(s) 180
AccI GTMKAC 1 cut(s) 762
AccII CGCG 3 cut(s) 247, 296, 325
AciI CCGC 7 cut(s) 11, 14, 116, 125, 223, 294, 329
AclWI GGATC 2 cut(s) 476, 489
AcoI YGGCCR 1 cut(s) 309
AcyI GRCGYC 2 cut(s) 5, 122
AfaI GTAC 3 cut(s) 152, 304, 380
AfeI AGCGCT 1 cut(s) 401
AfiI CCNNNNNNNGG 4 cut(s) 188, 645, 694, 695
AflIII ACRYGT 1 cut(s) 147
AgsI TTSAA 2 cut(s) 833, 865
AjiI CACGTC 1 cut(s) 148
AjnI CCWGG 1 cut(s) 673
AluBI AGCT 5 cut(s) 109, 450, 757, 904, 954
AluI AGCT 5 cut(s) 109, 450, 757, 904, 954
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 2 cut(s) 476, 489
Aor51HI AGCGCT 1 cut(s) 401
AoxI GGCC 4 cut(s) 256, 309, 685, 846
ApeKI GCWGC 2 cut(s) 901, 954
AspA2I CCTAGG 1 cut(s) 656
AspLEI GCGC 3 cut(s) 249, 327, 402
AspS9I GGNCC 5 cut(s) 90, 201, 653, 686, 846
AsuHPI GGTGA 4 cut(s) 385, 782, 920, 937
AvaII GGWCC 3 cut(s) 90, 201, 653
AvrII CCTAGG 1 cut(s) 656
BamHI GGATCC 1 cut(s) 481
BbsI GAAGAC 1 cut(s) 443
BbvCI CCTCAGC 1 cut(s) 597
BbvI GCAGC 2 cut(s) 913, 941
BccI CCATC 5 cut(s) 106, 190, 290, 655, 677
BceAI ACGGC 2 cut(s) 49, 800
BciT130I CCWGG 1 cut(s) 675
BcoDI GTCTC 1 cut(s) 113
BfaI CTAG 5 cut(s) 137, 143, 657, 713, 843
BfmI CTRYAG 2 cut(s) 343, 955
BfoI RGCGCY 1 cut(s) 403
BfuAI ACCTGC 1 cut(s) 180
BglI GCCNNNNNGGC 1 cut(s) 255
BglII AGATCT 2 cut(s) 25, 274
BisI GCNGC 5 cut(s) 12, 125, 294, 902, 955
BlnI CCTAGG 1 cut(s) 656
BlsI GCNGC 5 cut(s) 13, 126, 295, 903, 956
BmcAI AGTACT 1 cut(s) 380
Bme1390I CCNGG 1 cut(s) 675
Bme18I GGWCC 3 cut(s) 90, 201, 653
BmgBI CACGTC 1 cut(s) 148
BmgT120I GGNCC 5 cut(s) 90, 201, 653, 686, 846
BmiI GGNNCC 5 cut(s) 73, 91, 92, 180, 483
BmrFI CCNGG 1 cut(s) 675
BmsI GCATC 5 cut(s) 219, 349, 531, 793, 802
BpiI GAAGAC 1 cut(s) 443
BpmI CTGGAG 1 cut(s) 197
Bpu10I CCTNAGC 1 cut(s) 597
BpuEI CTTGAG 2 cut(s) 638, 737
Bsa29I ATCGAT 1 cut(s) 357
BsaHI GRCGYC 2 cut(s) 5, 122
BsaJI CCNNGG 3 cut(s) 197, 656, 674
Bsc4I CCNNNNNNNGG 4 cut(s) 188, 645, 694, 695
Bse1I ACTGG 2 cut(s) 214, 650
BseBI CCWGG 1 cut(s) 675
BseCI ATCGAT 1 cut(s) 357
BseDI CCNNGG 3 cut(s) 197, 656, 674
BseGI GGATG 4 cut(s) 193, 210, 666, 808
BseLI CCNNNNNNNGG 4 cut(s) 188, 645, 694, 695
BseMII CTCAG 3 cut(s) 285, 588, 912
BseNI ACTGG 2 cut(s) 214, 650
BseX3I CGGCCG 1 cut(s) 309
BseXI GCAGC 2 cut(s) 913, 941
BsgI GTGCAG 1 cut(s) 624
Bsh1236I CGCG 3 cut(s) 247, 296, 325
Bsh1285I CGRYCG 2 cut(s) 208, 312
BshFI GGCC 4 cut(s) 258, 311, 687, 848
BshVI ATCGAT 1 cut(s) 357
BsiEI CGRYCG 2 cut(s) 208, 312
BsiSI CCGG 2 cut(s) 75, 308
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 4 cut(s) 188, 645, 694, 695
BsmAI GTCTC 1 cut(s) 113
BsmBI CGTCTC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 76
BsnI GGCC 4 cut(s) 258, 311, 687, 848
Bsp1407I TGTACA 1 cut(s) 150
Bsp143I GATC 8 cut(s) 25, 66, 162, 205, 274, 297, 481, 576
BspACI CCGC 7 cut(s) 11, 14, 116, 125, 223, 294, 329
BspANI GGCC 4 cut(s) 258, 311, 687, 848
BspCNI CTCAG 3 cut(s) 284, 589, 913
BspDI ATCGAT 1 cut(s) 357
BspFNI CGCG 3 cut(s) 247, 296, 325
BspLI GGNNCC 5 cut(s) 73, 91, 92, 180, 483
BspMAI CTGCAG 1 cut(s) 959
BspMI ACCTGC 1 cut(s) 180
BspPI GGATC 2 cut(s) 476, 489
BsrGI TGTACA 1 cut(s) 150
BsrI ACTGG 2 cut(s) 214, 650
BssECI CCNNGG 3 cut(s) 197, 656, 674
BssMI GATC 8 cut(s) 25, 66, 162, 205, 274, 297, 481, 576
BssNI GRCGYC 2 cut(s) 5, 122
BssT1I CCWWGG 2 cut(s) 197, 656
Bst2UI CCWGG 1 cut(s) 675
Bst4CI ACNGT 5 cut(s) 191, 347, 383, 767, 895
Bst6I CTCTTC 1 cut(s) 477
BstACI GRCGYC 2 cut(s) 5, 122
BstAUI TGTACA 1 cut(s) 150
BstC8I GCNNGC 3 cut(s) 38, 329, 718
BstDEI CTNAG 3 cut(s) 271, 597, 921
BstF5I GGATG 4 cut(s) 193, 210, 666, 808
BstFNI CGCG 3 cut(s) 247, 296, 325
BstH2I RGCGCY 1 cut(s) 403
BstHHI GCGC 3 cut(s) 249, 327, 402
BstKTI GATC 8 cut(s) 28, 69, 165, 208, 277, 300, 484, 579
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 8 cut(s) 25, 66, 162, 205, 274, 297, 481, 576
BstMCI CGRYCG 2 cut(s) 208, 312
BstMWI GCNNNNNNNGC 7 cut(s) 11, 46, 244, 255, 602, 812, 960
BstNI CCWGG 1 cut(s) 675
BstNSI RCATGY 2 cut(s) 564, 720
BstSCI CCNGG 1 cut(s) 673
BstSFI CTRYAG 2 cut(s) 343, 955
BstUI CGCG 3 cut(s) 247, 296, 325
BstV1I GCAGC 2 cut(s) 913, 941
BstV2I GAAGAC 1 cut(s) 443
BstX2I RGATCY 3 cut(s) 25, 274, 481
BstYI RGATCY 3 cut(s) 25, 274, 481
BstZI CGGCCG 1 cut(s) 309
Bsu15I ATCGAT 1 cut(s) 357
BsuRI GGCC 4 cut(s) 258, 311, 687, 848
BsuTUI ATCGAT 1 cut(s) 357
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 4 cut(s) 193, 210, 666, 808
BveI ACCTGC 1 cut(s) 180
Cac8I GCNNGC 3 cut(s) 38, 329, 718
CfoI GCGC 3 cut(s) 249, 327, 402
Cfr13I GGNCC 5 cut(s) 90, 201, 653, 686, 846
ClaI ATCGAT 1 cut(s) 357
CseI GACGC 1 cut(s) 130
Csp6I GTAC 3 cut(s) 151, 303, 379
CviAII CATG 3 cut(s) 64, 561, 717
CviQI GTAC 3 cut(s) 151, 303, 379
DdeI CTNAG 3 cut(s) 271, 597, 921
DpnI GATC 8 cut(s) 27, 68, 164, 207, 276, 299, 483, 578
DpnII GATC 8 cut(s) 25, 66, 162, 205, 274, 297, 481, 576
EaeI YGGCCR 1 cut(s) 309
EagI CGGCCG 1 cut(s) 309
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
EciI GGCGGA 1 cut(s) 131
EclXI CGGCCG 1 cut(s) 309
Eco130I CCWWGG 2 cut(s) 197, 656
Eco147I AGGCCT 1 cut(s) 258
Eco47I GGWCC 3 cut(s) 90, 201, 653
Eco47III AGCGCT 1 cut(s) 401
Eco52I CGGCCG 1 cut(s) 309
EcoO109I RGGNCCY 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 673
EcoT14I CCWWGG 2 cut(s) 197, 656
EcoT22I ATGCAT 2 cut(s) 65, 562
ErhI CCWWGG 2 cut(s) 197, 656
Esp3I CGTCTC 1 cut(s) 113
FaeI CATG 3 cut(s) 67, 564, 720
FaqI GGGAC 1 cut(s) 76
FatI CATG 3 cut(s) 63, 560, 716
FauI CCCGC 2 cut(s) 7, 336
FauNDI CATATG 1 cut(s) 556
FblI GTMKAC 1 cut(s) 762
Fnu4HI GCNGC 5 cut(s) 12, 125, 294, 902, 955
FokI GGATG 4 cut(s) 180, 197, 673, 815
Fsp4HI GCNGC 5 cut(s) 12, 125, 294, 902, 955
FspBI CTAG 5 cut(s) 137, 143, 657, 713, 843
GlaI GCGC 3 cut(s) 248, 326, 401
GluI GCNGC 5 cut(s) 12, 125, 294, 902, 955
GsuI CTGGAG 1 cut(s) 197
HaeII RGCGCY 1 cut(s) 403
HaeIII GGCC 4 cut(s) 258, 311, 687, 848
HapII CCGG 2 cut(s) 75, 308
HgaI GACGC 1 cut(s) 130
HhaI GCGC 3 cut(s) 249, 327, 402
Hin1I GRCGYC 2 cut(s) 5, 122
Hin1II CATG 3 cut(s) 67, 564, 720
Hin6I GCGC 3 cut(s) 247, 325, 400
HinP1I GCGC 3 cut(s) 247, 325, 400
HindIII AAGCTT 2 cut(s) 448, 755
HinfI GANTC 4 cut(s) 242, 406, 512, 773
HpaII CCGG 2 cut(s) 75, 308
HphI GGTGA 4 cut(s) 385, 782, 920, 937
Hpy166II GTNNAC 4 cut(s) 151, 624, 746, 763
Hpy188I TCNGA 6 cut(s) 71, 187, 205, 274, 279, 388
Hpy188III TCNNGA 6 cut(s) 29, 265, 479, 580, 617, 743
Hpy8I GTNNAC 4 cut(s) 151, 624, 746, 763
Hpy99I CGWCG 2 cut(s) 10, 744
HpyAV CCTTC 1 cut(s) 248
HpyCH4III ACNGT 5 cut(s) 191, 347, 383, 767, 895
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 8 cut(s) 63, 488, 522, 560, 566, 605, 957, 971
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 46, 244, 255, 602, 812, 960
HpyF3I CTNAG 3 cut(s) 271, 597, 921
HpySE526I ACGT 1 cut(s) 147
Hsp92I GRCGYC 2 cut(s) 5, 122
Hsp92II CATG 3 cut(s) 67, 564, 720
HspAI GCGC 3 cut(s) 247, 325, 400
KflI GGGWCCC 1 cut(s) 90
Kzo9I GATC 8 cut(s) 25, 66, 162, 205, 274, 297, 481, 576
LmnI GCTCC 2 cut(s) 71, 178
Lsp1109I GCAGC 2 cut(s) 913, 941
LweI GCATC 5 cut(s) 219, 349, 531, 793, 802
MaeI CTAG 5 cut(s) 137, 143, 657, 713, 843
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 3 cut(s) 347, 854, 889
MalI GATC 8 cut(s) 27, 68, 164, 207, 276, 299, 483, 578
MboI GATC 8 cut(s) 25, 66, 162, 205, 274, 297, 481, 576
MboII GAAGA 6 cut(s) 446, 448, 464, 518, 725, 728
MfeI CAATTG 1 cut(s) 572
MflI RGATCY 3 cut(s) 25, 274, 481
MluCI AATT 1 cut(s) 572
MlyI GAGTC 1 cut(s) 236
Mph1103I ATGCAT 2 cut(s) 65, 562
MseI TTAA 2 cut(s) 501, 642
MslI CAYNNNNRTG 1 cut(s) 559
MspA1I CMGCKG 1 cut(s) 331
MspI CCGG 2 cut(s) 75, 308
MspR9I CCNGG 1 cut(s) 675
MunI CAATTG 1 cut(s) 572
MvaI CCWGG 1 cut(s) 675
MvnI CGCG 3 cut(s) 247, 296, 325
MwoI GCNNNNNNNGC 7 cut(s) 11, 46, 244, 255, 602, 812, 960
NdeI CATATG 1 cut(s) 556
NdeII GATC 8 cut(s) 25, 66, 162, 205, 274, 297, 481, 576
NlaIII CATG 3 cut(s) 67, 564, 720
NlaIV GGNNCC 5 cut(s) 73, 91, 92, 180, 483
NmuCI GTSAC 2 cut(s) 854, 889
NsiI ATGCAT 2 cut(s) 65, 562
NspI RCATGY 2 cut(s) 564, 720
PaeI GCATGC 1 cut(s) 720
PaqCI CACCTGC 1 cut(s) 180
PceI AGGCCT 1 cut(s) 258
PfeI GAWTC 3 cut(s) 406, 512, 773
PkrI GCNGC 5 cut(s) 13, 126, 295, 903, 956
Ple19I CGATCG 1 cut(s) 208
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
PpuMI RGGWCCY 1 cut(s) 90
Psp5II RGGWCCY 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 673
PspGI CCWGG 1 cut(s) 673
PspN4I GGNNCC 5 cut(s) 73, 91, 92, 180, 483
PspPI GGNCC 5 cut(s) 90, 201, 653, 686, 846
PspPPI RGGWCCY 1 cut(s) 90
PstI CTGCAG 1 cut(s) 959
PsuI RGATCY 3 cut(s) 25, 274, 481
PvuI CGATCG 1 cut(s) 208
RsaI GTAC 3 cut(s) 152, 304, 380
RsaNI GTAC 3 cut(s) 151, 303, 379
RseI CAYNNNNRTG 1 cut(s) 559
SaqAI TTAA 2 cut(s) 501, 642
SatI GCNGC 5 cut(s) 12, 125, 294, 902, 955
Sau3AI GATC 8 cut(s) 25, 66, 162, 205, 274, 297, 481, 576
Sau96I GGNCC 5 cut(s) 90, 201, 653, 686, 846
ScaI AGTACT 1 cut(s) 380
SchI GAGTC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 675
SfaNI GCATC 5 cut(s) 219, 349, 531, 793, 802
SfcI CTRYAG 2 cut(s) 343, 955
SinI GGWCC 3 cut(s) 90, 201, 653
SmiMI CAYNNNNRTG 1 cut(s) 559
SmlI CTYRAG 2 cut(s) 617, 752
SmoI CTYRAG 2 cut(s) 617, 752
SphI GCATGC 1 cut(s) 720
Sse9I AATT 1 cut(s) 572
SseBI AGGCCT 1 cut(s) 258
SsiI CCGC 7 cut(s) 11, 14, 116, 125, 223, 294, 329
SspMI CTAG 5 cut(s) 137, 143, 657, 713, 843
StuI AGGCCT 1 cut(s) 258
StyD4I CCNGG 1 cut(s) 673
StyI CCWWGG 2 cut(s) 197, 656
TaaI ACNGT 5 cut(s) 191, 347, 383, 767, 895
TaiI ACGT 1 cut(s) 150
TaqI TCGA 4 cut(s) 252, 357, 416, 579
TasI AATT 1 cut(s) 572
TatI WGTACW 3 cut(s) 150, 302, 378
TauI GCSGC 3 cut(s) 14, 127, 296
TfiI GAWTC 3 cut(s) 406, 512, 773
Tru1I TTAA 2 cut(s) 501, 642
Tru9I TTAA 2 cut(s) 501, 642
TseFI GTSAC 2 cut(s) 854, 889
TseI GCWGC 2 cut(s) 901, 954
Tsp45I GTSAC 2 cut(s) 854, 889
TspDTI ATGAA 4 cut(s) 73, 343, 658, 900
VpaK11BI GGWCC 3 cut(s) 90, 201, 653
XceI RCATGY 2 cut(s) 564, 720
XmaJI CCTAGG 1 cut(s) 656
XmiI GTMKAC 1 cut(s) 762
XspI CTAG 5 cut(s) 137, 143, 657, 713, 843
ZrmI AGTACT 1 cut(s) 380
Zsp2I ATGCAT 2 cut(s) 65, 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.