Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002945

Physical Location & Seq

Genomic Coordinates Forward (+)

3501145 .. 3501904

Gene Structure 760 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G10588.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGAAGATGCCCGTGGTTGTACAATTCTTCATAATCTCTCTTCTCCTCACATCTTCATTTTATGTACTTTCAAGCGCTGATTCATCAGCATGCGGTGGAAAGTGCAGTGTGAGATGCTCAAAGGCAGATCGAACACATGAGGAGTGCCTTGAGGACTGCGATATATGTTGCCAGAAGTGTAATTGTGTTCCTTCGGGGACTTATGGAAACAAAGATGAATGTCCTTGCTACCGTGATATGAAAAACTCCAAAGGCGGATCCAAGTGTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009505 GO:0030312 GO:0044424 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

90

Amino Acids

9.81

Weight (kDa)

7.41

Isoelectric Point (pI)

58.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GASA	PF02704	30 - 89	1.4e-21	Gibberellin regulated protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10588 AT1G10588 AT2G39540 AT5G59845
fragaria_vesca	FvH4_2g04680 FvH4_2g33410
malus_domestica	MD05G1093700.v1.1 MD08G1088900.v1.1 MD08G1089100.v1.1 MD08G1089300.v1.1 MD15G1073900.v1.1
prunus_persica	Prupe.1G426700_v2.0.a1 Prupe.1G426700_v2.0.a1 Prupe.8G138400_v2.0.a1 Prupe.8G138400_v2.0.a1 Prupe.8G138600_v2.0.a1
pyrus_communis	pycom05g09280 pycom08g07230 pycom08g07240 pycom08g07260 pycom15g06900
rosa_chinensis	RchiOBHm_Chr6g0254301 RchiOBHm_Chr6g0309121
rosa_multiflora	Rmu_sc0003666.1_g000006 Rmu_sc0005222.1_g000003 Rmu_sc0020102.1_g000002 Rmu_ssc0000412.1_g000016
rosa_roxburghii	Rroxscaffold_7G00159630 Rroxscaffold_7G00210890
rosa_rugosa	Rorug06G0369900
rosa_samantha	Rh6AG482700 Rh6BG491800 Rh6CG061300 Rh6CG496500 Rh6DG483400
rosa_wichuraiana	Rw6G005980 Rw6G006020 Rw6G042030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	93, 255
AclWI	GGATC	2 cut(s)	252, 265
AfaI	GTAC	2 cut(s)	21, 66
AfeI	AGCGCT	1 cut(s)	76
AgsI	TTSAA	1 cut(s)	72
AlwI	GGATC	2 cut(s)	252, 265
Aor51HI	AGCGCT	1 cut(s)	76
AspLEI	GCGC	1 cut(s)	77
BamHI	GGATCC	1 cut(s)	257
BfoI	RGCGCY	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	259
BmsI	GCATC	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	12
BseRI	GAGGAG	2 cut(s)	35, 155
BsgI	GTGCAG	1 cut(s)	124
BslFI	GGGAC	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	211
Bsp1407I	TGTACA	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	127, 257
BspACI	CCGC	2 cut(s)	93, 255
BspLI	GGNNCC	1 cut(s)	259
BspPI	GGATC	2 cut(s)	252, 265
BsrGI	TGTACA	1 cut(s)	19
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	2 cut(s)	127, 257
Bst4CI	ACNGT	1 cut(s)	233
Bst6I	CTCTTC	1 cut(s)	45
BstAUI	TGTACA	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	91
BstDSI	CCRYGG	1 cut(s)	12
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	2 cut(s)	130, 260
BstMBI	GATC	2 cut(s)	127, 257
BstNSI	RCATGY	1 cut(s)	93
BstX2I	RGATCY	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	257
BtgI	CCRYGG	1 cut(s)	12
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	91
CfoI	GCGC	1 cut(s)	77
Csp6I	GTAC	2 cut(s)	20, 65
CviAII	CATG	2 cut(s)	90, 137
CviQI	GTAC	2 cut(s)	20, 65
DpnI	GATC	2 cut(s)	129, 259
DpnII	GATC	2 cut(s)	127, 257
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
EciI	GGCGGA	1 cut(s)	270
Eco47III	AGCGCT	1 cut(s)	76
FaeI	CATG	2 cut(s)	93, 140
FaiI	YATR	8 cut(s)	32, 63, 91, 138, 164, 166, 204, 239
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	2 cut(s)	89, 136
GlaI	GCGC	1 cut(s)	76
HaeII	RGCGCY	1 cut(s)	78
HhaI	GCGC	1 cut(s)	77
Hin1II	CATG	2 cut(s)	93, 140
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HinfI	GANTC	1 cut(s)	80
HpyAV	CCTTC	1 cut(s)	201
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4V	TGCA	1 cut(s)	105
Hsp92II	CATG	2 cut(s)	93, 140
HspAI	GCGC	1 cut(s)	75
Kzo9I	GATC	2 cut(s)	127, 257
LpnPI	CCDG	1 cut(s)	185
LweI	GCATC	1 cut(s)	104
MalI	GATC	2 cut(s)	129, 259
MboI	GATC	2 cut(s)	127, 257
MboII	GAAGA	4 cut(s)	16, 19, 32, 45
MflI	RGATCY	1 cut(s)	257
MluCI	AATT	2 cut(s)	23, 181
MnlI	CCTC	3 cut(s)	56, 133, 145
MslI	CAYNNNNRTG	1 cut(s)	88
NdeII	GATC	2 cut(s)	127, 257
NlaIII	CATG	2 cut(s)	93, 140
NlaIV	GGNNCC	1 cut(s)	259
NspI	RCATGY	1 cut(s)	93
PaeI	GCATGC	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	257
RsaI	GTAC	2 cut(s)	21, 66
RsaNI	GTAC	2 cut(s)	20, 65
RseI	CAYNNNNRTG	1 cut(s)	88
Sau3AI	GATC	2 cut(s)	127, 257
SfaNI	GCATC	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	88
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SphI	GCATGC	1 cut(s)	93
Sse9I	AATT	2 cut(s)	23, 181
SsiI	CCGC	2 cut(s)	93, 255
TaaI	ACNGT	1 cut(s)	233
TaqI	TCGA	1 cut(s)	130
TasI	AATT	2 cut(s)	23, 181
TatI	WGTACW	2 cut(s)	19, 64
TfiI	GAWTC	1 cut(s)	80
TscAI	CASTG	1 cut(s)	112
TspDTI	ATGAA	6 cut(s)	17, 19, 45, 72, 231, 254
TspRI	CASTG	1 cut(s)	112
XceI	RCATGY	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.