pycom15g06900

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0002945
Physical Location & Seq
Forward (+)
4223008 .. 4223602
595 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g06900.1

Sequence Viewer

Length: 270 bp
ATGAAGCTCGTCTTTGCAACCTTCATGCTTGTTTGCCTTGTCCTCAGCTCCTCTTTCTTTGAGGCATCAATGGCTGGTTCTGATGCATTTTGTGACTCGAAGTGTGGGGTGAGATGTTCAAAAGCTGGATACAAGGAAAGGTGCTTGAAGTACTGTGGAATCTGTTGTGAGAAATGTCACTGCGTTCCATCGGGGACTTATGGGAACAAGGACGAGTGCCCTTGCTATAGGGACCTCAAAAACTCCAAGGGCGAGGACAAGTGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

90

Amino Acids

9.8

Weight (kDa)

8.22

Isoelectric Point (pI)

33.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 31 - 89 1.4e-23 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 152
AgsI TTSAA 2 cut(s) 120, 148
AluBI AGCT 3 cut(s) 7, 48, 125
AluI AGCT 3 cut(s) 7, 48, 125
AspS9I GGNCC 1 cut(s) 232
AsuHPI GGTGA 1 cut(s) 121
AvaII GGWCC 1 cut(s) 232
BaeGI GKGCMC 2 cut(s) 221, 266
BbvCI CCTCAGC 1 cut(s) 44
BccI CCATC 1 cut(s) 196
BciVI GTATCC 1 cut(s) 122
BfmI CTRYAG 1 cut(s) 226
BfuI GTATCC 1 cut(s) 122
BmcAI AGTACT 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 232
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 1 cut(s) 233
BmsI GCATC 2 cut(s) 73, 74
Bpu10I CCTNAGC 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 246
BseMII CTCAG 1 cut(s) 58
BseRI GAGGAG 1 cut(s) 40
BseSI GKGCMC 2 cut(s) 221, 266
BslFI GGGAC 2 cut(s) 208, 245
BsmFI GGGAC 2 cut(s) 208, 245
Bsp1286I GDGCHC 2 cut(s) 221, 266
BspCNI CTCAG 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 44
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstSFI CTRYAG 1 cut(s) 226
BstSLI GKGCMC 2 cut(s) 221, 266
BsuI GTATCC 1 cut(s) 122
BtsI GCAGTG 1 cut(s) 178
BtsIMutI CAGTG 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 232
Csp6I GTAC 1 cut(s) 151
CviAII CATG 1 cut(s) 25
CviJI RGCY 4 cut(s) 7, 48, 74, 125
CviKI_1 RGCY 4 cut(s) 7, 48, 74, 125
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 232
EcoO109I RGGNCCY 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 246
EcoT22I ATGCAT 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 1 cut(s) 28
FaiI YATR 3 cut(s) 26, 201, 228
FalI AAGNNNNNCTT 1 cut(s) 28
FaqI GGGAC 2 cut(s) 208, 245
FatI CATG 1 cut(s) 24
Hin1II CATG 1 cut(s) 28
HinfI GANTC 2 cut(s) 95, 159
HphI GGTGA 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4V TGCA 2 cut(s) 17, 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 44
Hsp92II CATG 1 cut(s) 28
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 2 cut(s) 60, 111
LweI GCATC 2 cut(s) 73, 74
MaeIII GTNAC 2 cut(s) 92, 176
MhlI GDGCHC 2 cut(s) 221, 266
MlyI GAGTC 1 cut(s) 89
MnlI CCTC 5 cut(s) 53, 55, 61, 245, 247
Mph1103I ATGCAT 1 cut(s) 88
MseI TTAA 1 cut(s) 268
MwoI GCNNNNNNNGC 1 cut(s) 71
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 1 cut(s) 233
NmuCI GTSAC 2 cut(s) 92, 176
NsiI ATGCAT 1 cut(s) 88
PfeI GAWTC 1 cut(s) 159
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PpuMI RGGWCCY 1 cut(s) 232
Psp5II RGGWCCY 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 233
PspPI GGNCC 1 cut(s) 232
PspPPI RGGWCCY 1 cut(s) 232
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
SaqAI TTAA 1 cut(s) 268
Sau96I GGNCC 1 cut(s) 232
ScaI AGTACT 1 cut(s) 152
SchI GAGTC 1 cut(s) 89
SduI GDGCHC 2 cut(s) 221, 266
SetI ASST 6 cut(s) 9, 23, 50, 127, 143, 237
SfaNI GCATC 2 cut(s) 73, 74
SfcI CTRYAG 1 cut(s) 226
SinI GGWCC 1 cut(s) 232
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 155
TaqI TCGA 1 cut(s) 98
TatI WGTACW 1 cut(s) 150
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 1 cut(s) 268
Tru9I TTAA 1 cut(s) 268
TscAI CASTG 1 cut(s) 185
TseFI GTSAC 2 cut(s) 92, 176
Tsp45I GTSAC 2 cut(s) 92, 176
TspDTI ATGAA 2 cut(s) 13, 17
TspRI CASTG 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 232
ZrmI AGTACT 1 cut(s) 152
Zsp2I ATGCAT 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.