MD08G1089100.v1.1

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0002945
Physical Location & Seq
Forward (+)
7379010 .. 7380060
1051 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1089100.v1.1.491

Sequence Viewer

Length: 267 bp
ATGAAGCTCCTCTCTGCAACCTTCATGCTTGTTTGCCTTGTCCTCACCTCCTCTTTCTTTGAGGCATCAATGGCTGGTTCTCCTTTTTGTGACTCCAAGTGTGGGGTGAGATGTTCAAAAACTGGATATAAGGACCGGTGCTTGAGGTACTGTGGAATCTGTTGTGAGAAATGTCAATGCGTTCCATCGGGGACTTATGGGAACAAGGACGAGTGCCCTTGCTACAGGGACCTCAAAAACTCGAAGGGCGAGGACAAGTGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

89

Amino Acids

9.71

Weight (kDa)

8.42

Isoelectric Point (pI)

34.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 30 - 88 7.2e-24 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 102
AgeI ACCGGT 1 cut(s) 135
AgsI TTSAA 1 cut(s) 117
AluBI AGCT 1 cut(s) 7
AluI AGCT 1 cut(s) 7
AsiGI ACCGGT 1 cut(s) 135
AspS9I GGNCC 2 cut(s) 133, 229
AsuHPI GGTGA 2 cut(s) 37, 118
AvaII GGWCC 2 cut(s) 133, 229
BaeGI GKGCMC 2 cut(s) 218, 263
BccI CCATC 1 cut(s) 193
BfmI CTRYAG 1 cut(s) 223
Bme18I GGWCC 2 cut(s) 133, 229
BmgT120I GGNCC 2 cut(s) 133, 229
BmiI GGNNCC 1 cut(s) 230
BmsI GCATC 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 163
BsaWI WCCGGW 1 cut(s) 135
Bsc4I CCNNNNNNNGG 1 cut(s) 102
Bse118I RCCGGY 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 127
BseLI CCNNNNNNNGG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 127
BseRI GAGGAG 1 cut(s) 40
BseSI GKGCMC 2 cut(s) 218, 263
BshTI ACCGGT 1 cut(s) 135
BsiSI CCGG 1 cut(s) 136
BslFI GGGAC 2 cut(s) 205, 242
BslI CCNNNNNNNGG 1 cut(s) 102
BsmFI GGGAC 2 cut(s) 205, 242
Bsp1286I GDGCHC 2 cut(s) 218, 263
BspLI GGNNCC 1 cut(s) 230
BsrFI RCCGGY 1 cut(s) 135
BsrI ACTGG 1 cut(s) 127
BssAI RCCGGY 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 152
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstSFI CTRYAG 1 cut(s) 223
BstSLI GKGCMC 2 cut(s) 218, 263
Cfr10I RCCGGY 1 cut(s) 135
Cfr13I GGNCC 2 cut(s) 133, 229
Csp6I GTAC 1 cut(s) 148
CspAI ACCGGT 1 cut(s) 135
CviAII CATG 1 cut(s) 25
CviJI RGCY 2 cut(s) 7, 74
CviKI_1 RGCY 2 cut(s) 7, 74
CviQI GTAC 1 cut(s) 148
Eco47I GGWCC 2 cut(s) 133, 229
EcoO109I RGGNCCY 1 cut(s) 229
FaeI CATG 1 cut(s) 28
FaiI YATR 3 cut(s) 26, 129, 198
FaqI GGGAC 2 cut(s) 205, 242
FatI CATG 1 cut(s) 24
HapII CCGG 1 cut(s) 136
Hin1II CATG 1 cut(s) 28
HinfI GANTC 2 cut(s) 92, 156
HpaII CCGG 1 cut(s) 136
HphI GGTGA 2 cut(s) 37, 118
HpyAV CCTTC 2 cut(s) 31, 238
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4V TGCA 1 cut(s) 17
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
Hsp92II CATG 1 cut(s) 28
LmnI GCTCC 1 cut(s) 12
LpnPI CCDG 4 cut(s) 60, 108, 149, 211
LweI GCATC 1 cut(s) 74
MaeIII GTNAC 1 cut(s) 89
MhlI GDGCHC 2 cut(s) 218, 263
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 8 cut(s) 20, 53, 55, 58, 61, 138, 242, 244
MseI TTAA 1 cut(s) 265
MspI CCGG 1 cut(s) 136
MwoI GCNNNNNNNGC 1 cut(s) 71
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 1 cut(s) 230
NmuCI GTSAC 1 cut(s) 89
PfeI GAWTC 1 cut(s) 156
PinAI ACCGGT 1 cut(s) 135
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
PpuMI RGGWCCY 1 cut(s) 229
Psp5II RGGWCCY 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 230
PspPI GGNCC 2 cut(s) 133, 229
PspPPI RGGWCCY 1 cut(s) 229
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SaqAI TTAA 1 cut(s) 265
Sau96I GGNCC 2 cut(s) 133, 229
SchI GAGTC 1 cut(s) 86
SduI GDGCHC 2 cut(s) 218, 263
SetI ASST 5 cut(s) 9, 23, 50, 149, 234
SfaNI GCATC 1 cut(s) 74
SfcI CTRYAG 1 cut(s) 223
SinI GGWCC 2 cut(s) 133, 229
SmlI CTYRAG 1 cut(s) 142
SmoI CTYRAG 1 cut(s) 142
TaaI ACNGT 1 cut(s) 152
TaqI TCGA 1 cut(s) 242
TfiI GAWTC 1 cut(s) 156
Tru1I TTAA 1 cut(s) 265
Tru9I TTAA 1 cut(s) 265
TseFI GTSAC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 2 cut(s) 13, 17
VpaK11BI GGWCC 2 cut(s) 133, 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.