Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002945

Physical Location & Seq

Genomic Coordinates Forward (+)

16500788 .. 16501414

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G39540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAAGCTCGTGGTTGTACAATTCTTCATAATCTCTCTTCTCCTCACATCTTCATTTTCTGTACTTTCAAGTGCTGATTCGTCATGCGGTGGAAAGTGCAATGTGAGATGCTCAAAGGCAGGACAACATGAAGAATGCCTCAAGTACTGCAATATATGTTGCCAGAAGTGTAATTGTGTTCCTTCGGGAACTTTTGGACACAAAGATGAATGTCCTTGCTACCGTGATATGAAAAACTCCAAAGGTGGATCCAAGTGTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009505 GO:0030312 GO:0044424 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

87

Amino Acids

9.44

Weight (kDa)

8.63

Isoelectric Point (pI)

47.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GASA	PF02704	29 - 87	4.2e-23	Gibberellin regulated protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10588 AT1G10588 AT2G39540 AT5G59845
fragaria_vesca	FvH4_2g04680 FvH4_2g33410
malus_domestica	MD05G1093700.v1.1 MD08G1088900.v1.1 MD08G1089100.v1.1 MD08G1089300.v1.1 MD15G1073900.v1.1
prunus_persica	Prupe.1G426700_v2.0.a1 Prupe.1G426700_v2.0.a1 Prupe.8G138400_v2.0.a1 Prupe.8G138400_v2.0.a1 Prupe.8G138600_v2.0.a1
pyrus_communis	pycom05g09280 pycom08g07230 pycom08g07240 pycom08g07260 pycom15g06900
rosa_chinensis	RchiOBHm_Chr6g0254301 RchiOBHm_Chr6g0309121
rosa_multiflora	Rmu_sc0003666.1_g000006 Rmu_sc0005222.1_g000003 Rmu_sc0020102.1_g000002 Rmu_ssc0000412.1_g000016
rosa_roxburghii	Rroxscaffold_7G00159630 Rroxscaffold_7G00210890
rosa_rugosa	Rorug06G0369900
rosa_samantha	Rh6AG482700 Rh6BG491800 Rh6CG061300 Rh6CG496500 Rh6DG483400
rosa_wichuraiana	Rw6G005980 Rw6G006020 Rw6G042030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	87
AclWI	GGATC	2 cut(s)	243, 256
AfaI	GTAC	3 cut(s)	18, 63, 146
AgsI	TTSAA	1 cut(s)	69
AluBI	AGCT	1 cut(s)	7
AluI	AGCT	1 cut(s)	7
AlwI	GGATC	2 cut(s)	243, 256
BamHI	GGATCC	1 cut(s)	248
BauI	CACGAG	1 cut(s)	8
BmcAI	AGTACT	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	250
BmsI	GCATC	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	106
BseMI	GCAATG	1 cut(s)	106
BseRI	GAGGAG	1 cut(s)	32
BsmI	GAATGC	1 cut(s)	140
Bsp1407I	TGTACA	1 cut(s)	16
Bsp143I	GATC	1 cut(s)	248
BspACI	CCGC	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	250
BspPI	GGATC	2 cut(s)	243, 256
BsrDI	GCAATG	1 cut(s)	106
BsrGI	TGTACA	1 cut(s)	16
BssMI	GATC	1 cut(s)	248
BssSI	CACGAG	1 cut(s)	8
Bst2BI	CACGAG	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	1 cut(s)	42
BstAUI	TGTACA	1 cut(s)	16
BstKTI	GATC	1 cut(s)	251
BstMBI	GATC	1 cut(s)	248
BstX2I	RGATCY	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	248
Csp6I	GTAC	3 cut(s)	17, 62, 145
CviAII	CATG	2 cut(s)	84, 128
CviJI	RGCY	1 cut(s)	7
CviKI_1	RGCY	1 cut(s)	7
CviQI	GTAC	3 cut(s)	17, 62, 145
DpnI	GATC	1 cut(s)	250
DpnII	GATC	1 cut(s)	248
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
FaeI	CATG	2 cut(s)	87, 131
FaiI	YATR	6 cut(s)	29, 85, 129, 155, 157, 230
FatI	CATG	2 cut(s)	83, 127
Hin1II	CATG	2 cut(s)	87, 131
HinfI	GANTC	1 cut(s)	77
Hpy188III	TCNNGA	1 cut(s)	186
HpyAV	CCTTC	1 cut(s)	192
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4V	TGCA	2 cut(s)	99, 150
Hsp92II	CATG	2 cut(s)	87, 131
Kzo9I	GATC	1 cut(s)	248
LpnPI	CCDG	2 cut(s)	105, 176
LweI	GCATC	1 cut(s)	98
MalI	GATC	1 cut(s)	250
MboI	GATC	1 cut(s)	248
MboII	GAAGA	4 cut(s)	16, 29, 42, 143
MflI	RGATCY	1 cut(s)	248
MluCI	AATT	2 cut(s)	20, 172
MnlI	CCTC	2 cut(s)	53, 149
MslI	CAYNNNNRTG	1 cut(s)	204
Mva1269I	GAATGC	1 cut(s)	140
NdeII	GATC	1 cut(s)	248
NlaIII	CATG	2 cut(s)	87, 131
NlaIV	GGNNCC	1 cut(s)	250
PctI	GAATGC	1 cut(s)	140
PfeI	GAWTC	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	250
PsuI	RGATCY	1 cut(s)	248
RsaI	GTAC	3 cut(s)	18, 63, 146
RsaNI	GTAC	3 cut(s)	17, 62, 145
RseI	CAYNNNNRTG	1 cut(s)	204
Sau3AI	GATC	1 cut(s)	248
ScaI	AGTACT	1 cut(s)	146
SetI	ASST	2 cut(s)	9, 247
SfaNI	GCATC	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	2 cut(s)	20, 172
SsiI	CCGC	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	224
TasI	AATT	2 cut(s)	20, 172
TatI	WGTACW	3 cut(s)	16, 61, 144
TfiI	GAWTC	1 cut(s)	77
TspDTI	ATGAA	6 cut(s)	16, 17, 42, 144, 222, 245
ZrmI	AGTACT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.