FvH4_2g04680

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002945
Physical Location & Seq
Forward (+)
3623884 .. 3624725
842 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g04680.t1

Sequence Viewer

Length: 267 bp
ATGAAGATCTCCTTCCCAGTTCTTCTCTGTTTTCTTCTTCTGAGCTCCTCTTTGATGGAGCCAGCCTTCTCTGCTACCTCCTCAAACTGCAGCAACAAGTGTTCGAATCGGTGTGCAGTTGCAGGAGTTCAAGATCGATGCCTCAAGTACTGTGGGATATGCTGTGAAGAGTGCAAGTGTGTCCCTTCTGGGACTTATGGCAACAAGCATGAGTGTCCTTGCTACAGGGACAAGAAGAACAACAAGGGGAGACCCAAGTGCCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

89

Amino Acids

9.67

Weight (kDa)

8.83

Isoelectric Point (pI)

49.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 29 - 88 7.7e-22 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 149
AgsI TTSAA 1 cut(s) 131
AluBI AGCT 1 cut(s) 45
AluI AGCT 1 cut(s) 45
Alw21I GWGCWC 1 cut(s) 47
Alw26I GTCTC 1 cut(s) 244
ApeKI GCWGC 1 cut(s) 90
AsuII TTCGAA 1 cut(s) 104
BaeGI GKGCMC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 47
Bbv12I GWGCWC 1 cut(s) 47
BbvI GCAGC 1 cut(s) 102
BccI CCATC 1 cut(s) 49
BcoDI GTCTC 1 cut(s) 244
BfmI CTRYAG 2 cut(s) 88, 223
BglII AGATCT 1 cut(s) 6
BisI GCNGC 1 cut(s) 91
BlsI GCNGC 1 cut(s) 92
BmcAI AGTACT 1 cut(s) 149
BmiI GGNNCC 1 cut(s) 60
BmrI ACTGGG 1 cut(s) 11
BmsI GCATC 1 cut(s) 128
BmuI ACTGGG 1 cut(s) 11
Bpu14I TTCGAA 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 128
Bsa29I ATCGAT 1 cut(s) 136
BsaI GGTCTC 1 cut(s) 244
Bse1I ACTGG 1 cut(s) 17
BseCI ATCGAT 1 cut(s) 136
BseMII CTCAG 1 cut(s) 32
BseNI ACTGG 1 cut(s) 17
BseRI GAGGAG 2 cut(s) 37, 70
BseSI GKGCMC 1 cut(s) 263
BseXI GCAGC 1 cut(s) 102
BsgI GTGCAG 1 cut(s) 135
BshVI ATCGAT 1 cut(s) 136
BsiHKAI GWGCWC 1 cut(s) 47
BslFI GGGAC 3 cut(s) 167, 205, 242
BsmAI GTCTC 1 cut(s) 244
BsmFI GGGAC 3 cut(s) 167, 205, 242
Bso31I GGTCTC 1 cut(s) 244
Bsp119I TTCGAA 1 cut(s) 104
Bsp1286I GDGCHC 2 cut(s) 47, 263
Bsp143I GATC 2 cut(s) 6, 133
BspCNI CTCAG 1 cut(s) 33
BspDI ATCGAT 1 cut(s) 136
BspLI GGNNCC 1 cut(s) 60
BspMAI CTGCAG 1 cut(s) 92
BspT104I TTCGAA 1 cut(s) 104
BspTNI GGTCTC 1 cut(s) 244
BsrI ACTGG 1 cut(s) 17
BssMI GATC 2 cut(s) 6, 133
Bst4CI ACNGT 1 cut(s) 152
Bst6I CTCTTC 1 cut(s) 162
BstBI TTCGAA 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 41
BstKTI GATC 2 cut(s) 9, 136
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 2 cut(s) 6, 133
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstSFI CTRYAG 2 cut(s) 88, 223
BstSLI GKGCMC 1 cut(s) 263
BstV1I GCAGC 1 cut(s) 102
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
Bsu15I ATCGAT 1 cut(s) 136
BsuTUI ATCGAT 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 63
ClaI ATCGAT 1 cut(s) 136
Csp6I GTAC 1 cut(s) 148
CspCI CAANNNNNGTGG 2 cut(s) 133, 168
CviAII CATG 1 cut(s) 209
CviJI RGCY 3 cut(s) 45, 61, 65
CviKI_1 RGCY 3 cut(s) 45, 61, 65
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 1 cut(s) 41
DpnI GATC 2 cut(s) 8, 135
DpnII GATC 2 cut(s) 6, 133
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Ecl136II GAGCTC 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 47
Eco31I GGTCTC 1 cut(s) 244
Eco53kI GAGCTC 1 cut(s) 45
EcoICRI GAGCTC 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 47
FaeI CATG 1 cut(s) 212
FaiI YATR 3 cut(s) 160, 198, 210
FalI AAGNNNNNCTT 1 cut(s) 28
FaqI GGGAC 3 cut(s) 167, 205, 242
FatI CATG 1 cut(s) 208
Fnu4HI GCNGC 1 cut(s) 91
FriOI GRGCYC 1 cut(s) 47
Fsp4HI GCNGC 1 cut(s) 91
GluI GCNGC 1 cut(s) 91
Hin1II CATG 1 cut(s) 212
HinfI GANTC 1 cut(s) 106
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 1 cut(s) 131
HpyAV CCTTC 3 cut(s) 22, 76, 195
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4V TGCA 4 cut(s) 90, 116, 122, 174
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 41
Hsp92II CATG 1 cut(s) 212
Kzo9I GATC 2 cut(s) 6, 133
LmnI GCTCC 2 cut(s) 50, 58
LpnPI CCDG 5 cut(s) 30, 75, 108, 174, 211
Lsp1109I GCAGC 1 cut(s) 102
LweI GCATC 1 cut(s) 128
MalI GATC 2 cut(s) 8, 135
MboI GATC 2 cut(s) 6, 133
MboII GAAGA 6 cut(s) 14, 16, 26, 29, 179, 247
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 2 cut(s) 47, 263
MnlI CCTC 4 cut(s) 58, 88, 91, 152
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 2 cut(s) 6, 133
NlaIII CATG 1 cut(s) 212
NlaIV GGNNCC 1 cut(s) 60
NspV TTCGAA 1 cut(s) 104
PfeI GAWTC 1 cut(s) 106
PkrI GCNGC 1 cut(s) 92
Psp124BI GAGCTC 1 cut(s) 47
PspN4I GGNNCC 1 cut(s) 60
PstI CTGCAG 1 cut(s) 92
PsuI RGATCY 1 cut(s) 6
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SacI GAGCTC 1 cut(s) 47
SatI GCNGC 1 cut(s) 91
Sau3AI GATC 2 cut(s) 6, 133
ScaI AGTACT 1 cut(s) 149
SduI GDGCHC 2 cut(s) 47, 263
SetI ASST 2 cut(s) 47, 80
SfaNI GCATC 1 cut(s) 128
SfcI CTRYAG 2 cut(s) 88, 223
SfuI TTCGAA 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SstI GAGCTC 1 cut(s) 47
TaaI ACNGT 1 cut(s) 152
TaqI TCGA 2 cut(s) 104, 136
TatI WGTACW 1 cut(s) 147
TfiI GAWTC 1 cut(s) 106
TseI GCWGC 1 cut(s) 90
TspDTI ATGAA 1 cut(s) 17
ZrmI AGTACT 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.