MD15G1073900.v1.1

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0002945
Physical Location & Seq
Forward (+)
5050457 .. 5051518
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1073900.v1.1.491

Sequence Viewer

Length: 267 bp
ATGAAGCTCGTCTTTGCAACCTTCATGCTTGTTTGCCTTGTCCTCAGCTCCTCTTTCTTTGAGGCATCAATGGCTGGGTCTCCATTTTGTGACTCGAAGTGTGGGGTGAGATGTTCAAAAGCTGGATACAAGGAAAGGTGCTTGAAGTACTGTGGAATATGTTGTGAGAAATGTCACTGCGTTCCATCGGGGACTTATGGGAACAAGGACGAGTGCCCTTGCTATAGGGACCTCAAAAACTCCAAGGGCGAGGACAAGTGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

89

Amino Acids

9.71

Weight (kDa)

8.42

Isoelectric Point (pI)

41.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 30 - 88 1.3e-23 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 149
AgsI TTSAA 2 cut(s) 117, 145
AluBI AGCT 3 cut(s) 7, 48, 122
AluI AGCT 3 cut(s) 7, 48, 122
Alw26I GTCTC 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 229
AsuHPI GGTGA 1 cut(s) 118
AvaII GGWCC 1 cut(s) 229
BaeGI GKGCMC 2 cut(s) 218, 263
BbvCI CCTCAGC 1 cut(s) 44
BccI CCATC 1 cut(s) 193
BciVI GTATCC 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 84
BfmI CTRYAG 1 cut(s) 223
BfuI GTATCC 1 cut(s) 119
BmcAI AGTACT 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 229
BmiI GGNNCC 1 cut(s) 230
BmsI GCATC 1 cut(s) 74
Bpu10I CCTNAGC 1 cut(s) 44
BsaI GGTCTC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 243
BseMII CTCAG 1 cut(s) 58
BseRI GAGGAG 1 cut(s) 40
BseSI GKGCMC 2 cut(s) 218, 263
BseYI CCCAGC 1 cut(s) 74
BslFI GGGAC 2 cut(s) 205, 242
BsmAI GTCTC 1 cut(s) 84
BsmFI GGGAC 2 cut(s) 205, 242
Bso31I GGTCTC 1 cut(s) 84
Bsp1286I GDGCHC 2 cut(s) 218, 263
BspCNI CTCAG 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 230
BspTNI GGTCTC 1 cut(s) 84
BssECI CCNNGG 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 243
Bst4CI ACNGT 1 cut(s) 152
BstDEI CTNAG 1 cut(s) 44
BstMAI GTCTC 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstSFI CTRYAG 1 cut(s) 223
BstSLI GKGCMC 2 cut(s) 218, 263
BsuI GTATCC 1 cut(s) 119
BtsI GCAGTG 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 175
Cfr13I GGNCC 1 cut(s) 229
Csp6I GTAC 1 cut(s) 148
CviAII CATG 1 cut(s) 25
CviJI RGCY 4 cut(s) 7, 48, 74, 122
CviKI_1 RGCY 4 cut(s) 7, 48, 74, 122
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 243
Eco31I GGTCTC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 229
EcoO109I RGGNCCY 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 1 cut(s) 28
FaiI YATR 4 cut(s) 26, 160, 198, 225
FalI AAGNNNNNCTT 1 cut(s) 28
FaqI GGGAC 2 cut(s) 205, 242
FatI CATG 1 cut(s) 24
GsaI CCCAGC 1 cut(s) 78
Hin1II CATG 1 cut(s) 28
HinfI GANTC 1 cut(s) 92
HphI GGTGA 1 cut(s) 118
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4V TGCA 1 cut(s) 17
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 44
Hsp92II CATG 1 cut(s) 28
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 2 cut(s) 60, 108
LweI GCATC 1 cut(s) 74
MaeIII GTNAC 2 cut(s) 89, 173
MhlI GDGCHC 2 cut(s) 218, 263
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 5 cut(s) 53, 55, 61, 242, 244
MseI TTAA 1 cut(s) 265
MwoI GCNNNNNNNGC 1 cut(s) 71
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 1 cut(s) 230
NmuCI GTSAC 2 cut(s) 89, 173
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
PpuMI RGGWCCY 1 cut(s) 229
Psp5II RGGWCCY 1 cut(s) 229
PspFI CCCAGC 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 230
PspPI GGNCC 1 cut(s) 229
PspPPI RGGWCCY 1 cut(s) 229
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SaqAI TTAA 1 cut(s) 265
Sau96I GGNCC 1 cut(s) 229
ScaI AGTACT 1 cut(s) 149
SchI GAGTC 1 cut(s) 86
SduI GDGCHC 2 cut(s) 218, 263
SetI ASST 6 cut(s) 9, 23, 50, 124, 140, 234
SfaNI GCATC 1 cut(s) 74
SfcI CTRYAG 1 cut(s) 223
SinI GGWCC 1 cut(s) 229
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 1 cut(s) 152
TaqI TCGA 1 cut(s) 95
TatI WGTACW 1 cut(s) 147
Tru1I TTAA 1 cut(s) 265
Tru9I TTAA 1 cut(s) 265
TscAI CASTG 1 cut(s) 182
TseFI GTSAC 2 cut(s) 89, 173
Tsp45I GTSAC 2 cut(s) 89, 173
TspDTI ATGAA 2 cut(s) 13, 17
TspRI CASTG 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 229
ZrmI AGTACT 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.