RchiOBHm_Chr6g0254301

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002945
Physical Location & Seq
Forward (+)
9371735 .. 9372960
1226 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22810

Sequence Viewer

Length: 267 bp
ATGAAGATCTCCTTCCCTGTTCTTGTCTGTTTTCTTCTTCTTAGCTCCTCTCTGATGGAGCCGGCCTTCGCTGCTACCTCCTCATACTGCAGCAACAAGTGTTCGACTCGGTGTGCAGTAGCAGGAGTTCAAGATCGATGCCTCAAGTACTGTGGGATATGCTGTGAAGAGTGCAAGTGTGTCCCTTCTGGGACTTATGGCAACAAGCATGAGTGCCCTTGCTACAGGGACAAGAAGAACAAGAAGGGGAAGCCCAAGTGCCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

88

Amino Acids

9.66

Weight (kDa)

8.92

Isoelectric Point (pI)

46.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 30 - 88 6.6e-22 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 149
AgsI TTSAA 1 cut(s) 131
AluBI AGCT 1 cut(s) 45
AluI AGCT 1 cut(s) 45
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 2 cut(s) 71, 90
BaeGI GKGCMC 2 cut(s) 218, 263
BbvI GCAGC 2 cut(s) 58, 102
BccI CCATC 1 cut(s) 49
BfmI CTRYAG 2 cut(s) 88, 223
BglII AGATCT 1 cut(s) 6
BisI GCNGC 2 cut(s) 72, 91
BlsI GCNGC 2 cut(s) 73, 92
BmcAI AGTACT 1 cut(s) 149
BmiI GGNNCC 1 cut(s) 60
BmsI GCATC 1 cut(s) 128
BpuEI CTTGAG 1 cut(s) 128
Bsa29I ATCGAT 1 cut(s) 136
Bse118I RCCGGY 1 cut(s) 61
BseCI ATCGAT 1 cut(s) 136
BseRI GAGGAG 2 cut(s) 37, 70
BseSI GKGCMC 2 cut(s) 218, 263
BseXI GCAGC 2 cut(s) 58, 102
BsgI GTGCAG 1 cut(s) 135
BshFI GGCC 1 cut(s) 65
BshVI ATCGAT 1 cut(s) 136
BsiSI CCGG 1 cut(s) 62
BslFI GGGAC 3 cut(s) 167, 205, 242
BsmFI GGGAC 3 cut(s) 167, 205, 242
BsnI GGCC 1 cut(s) 65
Bsp1286I GDGCHC 2 cut(s) 218, 263
Bsp143I GATC 2 cut(s) 6, 133
BspANI GGCC 1 cut(s) 65
BspDI ATCGAT 1 cut(s) 136
BspLI GGNNCC 1 cut(s) 60
BspMAI CTGCAG 1 cut(s) 92
BsrFI RCCGGY 1 cut(s) 61
BssAI RCCGGY 1 cut(s) 61
BssMI GATC 2 cut(s) 6, 133
Bst4CI ACNGT 1 cut(s) 152
Bst6I CTCTTC 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 41
BstKTI GATC 2 cut(s) 9, 136
BstMBI GATC 2 cut(s) 6, 133
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstSFI CTRYAG 2 cut(s) 88, 223
BstSLI GKGCMC 2 cut(s) 218, 263
BstV1I GCAGC 2 cut(s) 58, 102
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
Bsu15I ATCGAT 1 cut(s) 136
BsuRI GGCC 1 cut(s) 65
BsuTUI ATCGAT 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 63
Cfr10I RCCGGY 1 cut(s) 61
ClaI ATCGAT 1 cut(s) 136
Csp6I GTAC 1 cut(s) 148
CspCI CAANNNNNGTGG 2 cut(s) 133, 168
CviAII CATG 1 cut(s) 209
CviJI RGCY 4 cut(s) 45, 61, 65, 253
CviKI_1 RGCY 4 cut(s) 45, 61, 65, 253
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 1 cut(s) 41
DpnI GATC 2 cut(s) 8, 135
DpnII GATC 2 cut(s) 6, 133
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
FaeI CATG 1 cut(s) 212
FaiI YATR 4 cut(s) 85, 160, 198, 210
FalI AAGNNNNNCTT 1 cut(s) 28
FaqI GGGAC 3 cut(s) 167, 205, 242
FatI CATG 1 cut(s) 208
Fnu4HI GCNGC 2 cut(s) 72, 91
Fsp4HI GCNGC 2 cut(s) 72, 91
GluI GCNGC 2 cut(s) 72, 91
HaeIII GGCC 1 cut(s) 65
HapII CCGG 1 cut(s) 62
Hin1II CATG 1 cut(s) 212
HinfI GANTC 1 cut(s) 106
HpaII CCGG 1 cut(s) 62
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 1 cut(s) 131
HpyAV CCTTC 4 cut(s) 22, 76, 195, 238
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4V TGCA 3 cut(s) 90, 116, 174
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 41
Hsp92II CATG 1 cut(s) 212
KroI GCCGGC 1 cut(s) 61
KroNI GCCGGC 1 cut(s) 63
Kzo9I GATC 2 cut(s) 6, 133
LmnI GCTCC 2 cut(s) 50, 58
LpnPI CCDG 5 cut(s) 30, 75, 108, 174, 211
Lsp1109I GCAGC 2 cut(s) 58, 102
LweI GCATC 1 cut(s) 128
MalI GATC 2 cut(s) 8, 135
MboI GATC 2 cut(s) 6, 133
MboII GAAGA 5 cut(s) 16, 26, 29, 179, 247
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 2 cut(s) 218, 263
MlyI GAGTC 1 cut(s) 100
MnlI CCTC 4 cut(s) 58, 88, 91, 152
MroNI GCCGGC 1 cut(s) 61
MspI CCGG 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 71
NaeI GCCGGC 1 cut(s) 63
NdeII GATC 2 cut(s) 6, 133
NgoMIV GCCGGC 1 cut(s) 61
NlaIII CATG 1 cut(s) 212
NlaIV GGNNCC 1 cut(s) 60
PdiI GCCGGC 1 cut(s) 63
PkrI GCNGC 2 cut(s) 73, 92
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 60
PsrI GAACNNNNNNTAC 2 cut(s) 111, 143
PstI CTGCAG 1 cut(s) 92
PsuI RGATCY 1 cut(s) 6
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SatI GCNGC 2 cut(s) 72, 91
Sau3AI GATC 2 cut(s) 6, 133
ScaI AGTACT 1 cut(s) 149
SchI GAGTC 1 cut(s) 100
SduI GDGCHC 2 cut(s) 218, 263
SetI ASST 2 cut(s) 47, 80
SfaNI GCATC 1 cut(s) 128
SfcI CTRYAG 2 cut(s) 88, 223
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
TaaI ACNGT 1 cut(s) 152
TaqI TCGA 2 cut(s) 104, 136
TatI WGTACW 1 cut(s) 147
TseI GCWGC 2 cut(s) 71, 90
TspDTI ATGAA 1 cut(s) 17
ZrmI AGTACT 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.