Rroxscaffold_7G00210890

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002945
Physical Location & Seq
Reverse (-)
61317728 .. 61320070
2343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00210890.1

Sequence Viewer

Length: 492 bp
ATGCACGTGATTGTTTCTCCATCATCAACTAACATATCTCTGATATGCATATATGTCCTTATTTCCCAGGAATTCAACATGAGTATCTTGGCAGCTCATATGCGTCCAAGATCGAAGTCTGAAATTATCAAGGTCAATCTGCTAGCATCTAGAGATTATGCCAAGGAACACTTTGATGGTCAGCAGGCTTGCCCAACCAATAGTATGGGAGTTAATGAGGTGAAGATGAAGATCTCCTTCTCAGTTCTTGTCTGTTTTCTTCTTCTTAGCTCCTCTCTGATGGAGCCAGCCTTCGCTGCTACCTCCTCATACTGCAGCAACAAGTGTTCGACTCGGTGCGCAGTAGCAGGAGTTCAAGATCGATGCCTCAAGTACTGTGGGATATGCTGTGAAGAGTGCAAGTGTGTTCCTTCTGGGACTTATGGCAACAAGCATGAGTGCCCTTGCTACAGGGACAAGAAGAACAAGAAGGGGAAGCCCAAGTGCCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

163

Amino Acids

17.99

Weight (kDa)

8.89

Isoelectric Point (pI)

55.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 105 - 163 3.2e-21 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 340
AcsI RAATTY 1 cut(s) 71
AcvI CACGTG 1 cut(s) 7
AfaI GTAC 1 cut(s) 374
AgsI TTSAA 2 cut(s) 76, 356
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 2 cut(s) 95, 270
AluI AGCT 2 cut(s) 95, 270
ApeKI GCWGC 3 cut(s) 92, 296, 315
ApoI RAATTY 1 cut(s) 71
AspLEI GCGC 1 cut(s) 341
AsuHPI GGTGA 1 cut(s) 232
AsuNHI GCTAGC 1 cut(s) 142
BaeGI GKGCMC 2 cut(s) 443, 488
BaeI ACNNNNGTAYC 2 cut(s) 67, 100
BbrPI CACGTG 1 cut(s) 7
BbvI GCAGC 3 cut(s) 104, 283, 327
BccI CCATC 3 cut(s) 28, 170, 274
BciT130I CCWGG 1 cut(s) 68
BfaI CTAG 2 cut(s) 143, 150
BfmI CTRYAG 2 cut(s) 313, 448
BglII AGATCT 1 cut(s) 231
BisI GCNGC 3 cut(s) 93, 297, 316
BlsI GCNGC 3 cut(s) 94, 298, 317
BmcAI AGTACT 1 cut(s) 374
Bme1390I CCNGG 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 2 cut(s) 155, 353
BmtI GCTAGC 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 353
Bsa29I ATCGAT 1 cut(s) 361
BsaAI YACGTR 1 cut(s) 7
BsaBI GATNNNNATC 1 cut(s) 230
BsaJI CCNNGG 2 cut(s) 66, 162
Bse8I GATNNNNATC 1 cut(s) 230
BseBI CCWGG 1 cut(s) 68
BseCI ATCGAT 1 cut(s) 361
BseDI CCNNGG 2 cut(s) 66, 162
BseJI GATNNNNATC 1 cut(s) 230
BseMII CTCAG 1 cut(s) 255
BseRI GAGGAG 2 cut(s) 262, 295
BseSI GKGCMC 2 cut(s) 443, 488
BseXI GCAGC 3 cut(s) 104, 283, 327
BshVI ATCGAT 1 cut(s) 361
BslFI GGGAC 2 cut(s) 430, 467
BsmFI GGGAC 2 cut(s) 430, 467
Bsp1286I GDGCHC 2 cut(s) 443, 488
Bsp143I GATC 3 cut(s) 110, 231, 358
BspCNI CTCAG 1 cut(s) 254
BspDI ATCGAT 1 cut(s) 361
BspLI GGNNCC 1 cut(s) 285
BspMAI CTGCAG 1 cut(s) 317
BspOI GCTAGC 1 cut(s) 146
BssECI CCNNGG 2 cut(s) 66, 162
BssMI GATC 3 cut(s) 110, 231, 358
BssT1I CCWWGG 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 377
Bst6I CTCTTC 1 cut(s) 387
BstBAI YACGTR 1 cut(s) 7
BstC8I GCNNGC 4 cut(s) 144, 186, 190, 288
BstDEI CTNAG 2 cut(s) 241, 266
BstHHI GCGC 1 cut(s) 341
BstKTI GATC 3 cut(s) 113, 234, 361
BstMBI GATC 3 cut(s) 110, 231, 358
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 66
BstSFI CTRYAG 2 cut(s) 313, 448
BstSLI GKGCMC 2 cut(s) 443, 488
BstV1I GCAGC 3 cut(s) 104, 283, 327
BstX2I RGATCY 1 cut(s) 231
BstXI CCANNNNNNTGG 1 cut(s) 205
BstYI RGATCY 1 cut(s) 231
Bsu15I ATCGAT 1 cut(s) 361
BsuTUI ATCGAT 1 cut(s) 361
Cac8I GCNNGC 4 cut(s) 144, 186, 190, 288
CfoI GCGC 1 cut(s) 341
ClaI ATCGAT 1 cut(s) 361
CseI GACGC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 373
CspCI CAANNNNNGTGG 2 cut(s) 358, 393
CviAII CATG 2 cut(s) 79, 434
CviJI RGCY 6 cut(s) 95, 188, 270, 286, 290, 478
CviKI_1 RGCY 6 cut(s) 95, 188, 270, 286, 290, 478
CviQI GTAC 1 cut(s) 373
DdeI CTNAG 2 cut(s) 241, 266
DpnI GATC 3 cut(s) 112, 233, 360
DpnII GATC 3 cut(s) 110, 231, 358
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
Eco130I CCWWGG 1 cut(s) 162
Eco72I CACGTG 1 cut(s) 7
EcoRI GAATTC 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 162
EcoT22I ATGCAT 1 cut(s) 50
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 2 cut(s) 82, 437
FalI AAGNNNNNCTT 4 cut(s) 155, 187, 221, 253
FaqI GGGAC 2 cut(s) 430, 467
FatI CATG 2 cut(s) 78, 433
FauNDI CATATG 1 cut(s) 99
Fnu4HI GCNGC 3 cut(s) 93, 297, 316
Fsp4HI GCNGC 3 cut(s) 93, 297, 316
FspBI CTAG 2 cut(s) 143, 150
FspI TGCGCA 1 cut(s) 340
GlaI GCGC 1 cut(s) 340
GluI GCNGC 3 cut(s) 93, 297, 316
HgaI GACGC 1 cut(s) 92
HhaI GCGC 1 cut(s) 341
Hin1II CATG 2 cut(s) 82, 437
Hin6I GCGC 1 cut(s) 339
HinP1I GCGC 1 cut(s) 339
HinfI GANTC 1 cut(s) 331
HphI GGTGA 1 cut(s) 232
Hpy188I TCNGA 3 cut(s) 42, 121, 279
Hpy188III TCNNGA 2 cut(s) 150, 356
HpyAV CCTTC 4 cut(s) 247, 301, 420, 463
HpyCH4III ACNGT 1 cut(s) 377
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 4 cut(s) 4, 48, 315, 399
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 2 cut(s) 241, 266
HpySE526I ACGT 1 cut(s) 6
Hsp92II CATG 2 cut(s) 82, 437
HspAI GCGC 1 cut(s) 339
Kzo9I GATC 3 cut(s) 110, 231, 358
LmnI GCTCC 2 cut(s) 275, 283
LpnPI CCDG 7 cut(s) 53, 80, 170, 300, 333, 399, 436
Lsp1109I GCAGC 3 cut(s) 104, 283, 327
LweI GCATC 2 cut(s) 155, 353
MaeI CTAG 2 cut(s) 143, 150
MaeII ACGT 1 cut(s) 6
MalI GATC 3 cut(s) 112, 233, 360
MboI GATC 3 cut(s) 110, 231, 358
MboII GAAGA 6 cut(s) 235, 241, 251, 254, 404, 472
MflI RGATCY 1 cut(s) 231
MhlI GDGCHC 2 cut(s) 443, 488
MluCI AATT 2 cut(s) 71, 123
MlyI GAGTC 1 cut(s) 325
MnlI CCTC 5 cut(s) 211, 283, 313, 316, 377
Mph1103I ATGCAT 1 cut(s) 50
MseI TTAA 1 cut(s) 213
MslI CAYNNNNRTG 1 cut(s) 174
MspR9I CCNGG 1 cut(s) 68
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 296
NdeI CATATG 1 cut(s) 99
NdeII GATC 3 cut(s) 110, 231, 358
NheI GCTAGC 1 cut(s) 142
NlaIII CATG 2 cut(s) 82, 437
NlaIV GGNNCC 1 cut(s) 285
NsbI TGCGCA 1 cut(s) 340
NsiI ATGCAT 1 cut(s) 50
PkrI GCNGC 3 cut(s) 94, 298, 317
PleI GAGTC 1 cut(s) 325
PmaCI CACGTG 1 cut(s) 7
PmlI CACGTG 1 cut(s) 7
PpsI GAGTC 1 cut(s) 325
Ppu21I YACGTR 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 66
PspCI CACGTG 1 cut(s) 7
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 285
PsrI GAACNNNNNNTAC 2 cut(s) 336, 368
PstI CTGCAG 1 cut(s) 317
PsuI RGATCY 1 cut(s) 231
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
RseI CAYNNNNRTG 1 cut(s) 174
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 3 cut(s) 93, 297, 316
Sau3AI GATC 3 cut(s) 110, 231, 358
ScaI AGTACT 1 cut(s) 374
SchI GAGTC 1 cut(s) 325
ScrFI CCNGG 1 cut(s) 68
SduI GDGCHC 2 cut(s) 443, 488
SetI ASST 6 cut(s) 9, 97, 135, 222, 272, 305
SfaNI GCATC 2 cut(s) 155, 353
SfcI CTRYAG 2 cut(s) 313, 448
SmiMI CAYNNNNRTG 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 2 cut(s) 71, 123
SspMI CTAG 2 cut(s) 143, 150
StyD4I CCNGG 1 cut(s) 66
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 377
TaiI ACGT 1 cut(s) 9
TaqI TCGA 3 cut(s) 113, 329, 361
TasI AATT 2 cut(s) 71, 123
TatI WGTACW 1 cut(s) 372
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TseI GCWGC 3 cut(s) 92, 296, 315
TspDTI ATGAA 1 cut(s) 242
XapI RAATTY 1 cut(s) 71
XbaI TCTAGA 1 cut(s) 149
XspI CTAG 2 cut(s) 143, 150
ZrmI AGTACT 1 cut(s) 374
Zsp2I ATGCAT 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.