MD05G1093700.v1.1

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0002945
Physical Location & Seq
Reverse (-)
19880941 .. 19881778
838 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1093700.v1.1.491

Sequence Viewer

Length: 267 bp
ATGAAGCTCTACTTTCCACTCCTCTGTTTCCTTCTTCTTACCTCCTCTTTCATGGATCCAGCCATGGCCCTCGCTACTTCACCATATTGCAGCGACAAGTGCTCGACGAGGTGTGCAGTAGCAGGAGTTCAGGATCGATGCATGAAGTATTGTGGGATATGCTGTGAAGCGTGCAAGTGTGTGCCGTCTGGGACTTATGGGAACAAGCACGAGTGCCCTTGCTACAGGGACAAGAAGAACGACAAGGGCAAGCCCAAGTGCCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

89

Amino Acids

9.74

Weight (kDa)

8.7

Isoelectric Point (pI)

35.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 30 - 88 7.7e-22 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 50, 63, 141
AluBI AGCT 1 cut(s) 7
AluI AGCT 1 cut(s) 7
Alw21I GWGCWC 1 cut(s) 104
AlwI GGATC 3 cut(s) 50, 63, 141
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 72
BaeGI GKGCMC 2 cut(s) 218, 263
BamHI GGATCC 1 cut(s) 55
BauI CACGAG 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 104
BbvI GCAGC 1 cut(s) 102
BceAI ACGGC 1 cut(s) 169
BfmI CTRYAG 1 cut(s) 223
BisI GCNGC 1 cut(s) 91
BlsI GCNGC 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 1 cut(s) 57
BmsI GCATC 1 cut(s) 128
Bsa29I ATCGAT 1 cut(s) 136
BsaJI CCNNGG 1 cut(s) 63
BseCI ATCGAT 1 cut(s) 136
BseDI CCNNGG 1 cut(s) 63
BseRI GAGGAG 2 cut(s) 11, 34
BseSI GKGCMC 2 cut(s) 218, 263
BseXI GCAGC 1 cut(s) 102
BsgI GTGCAG 1 cut(s) 135
BshFI GGCC 1 cut(s) 68
BshVI ATCGAT 1 cut(s) 136
BsiHKAI GWGCWC 1 cut(s) 104
BslFI GGGAC 2 cut(s) 205, 242
BsmFI GGGAC 2 cut(s) 205, 242
BsnI GGCC 1 cut(s) 68
Bsp1286I GDGCHC 3 cut(s) 104, 218, 263
Bsp143I GATC 2 cut(s) 55, 133
Bsp19I CCATGG 1 cut(s) 63
BspANI GGCC 1 cut(s) 68
BspDI ATCGAT 1 cut(s) 136
BspLI GGNNCC 1 cut(s) 57
BspPI GGATC 3 cut(s) 50, 63, 141
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 2 cut(s) 55, 133
BssSI CACGAG 1 cut(s) 209
BssT1I CCWWGG 1 cut(s) 63
Bst2BI CACGAG 1 cut(s) 209
BstC8I GCNNGC 2 cut(s) 172, 251
BstDSI CCRYGG 1 cut(s) 63
BstKTI GATC 2 cut(s) 58, 136
BstMBI GATC 2 cut(s) 55, 133
BstMWI GCNNNNNNNGC 1 cut(s) 99
BstSFI CTRYAG 1 cut(s) 223
BstSLI GKGCMC 2 cut(s) 218, 263
BstV1I GCAGC 1 cut(s) 102
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
Bsu15I ATCGAT 1 cut(s) 136
BsuRI GGCC 1 cut(s) 68
BsuTUI ATCGAT 1 cut(s) 136
BtgI CCRYGG 1 cut(s) 63
Cac8I GCNNGC 2 cut(s) 172, 251
Cfr13I GGNCC 1 cut(s) 67
ClaI ATCGAT 1 cut(s) 136
CviAII CATG 3 cut(s) 52, 64, 142
CviJI RGCY 4 cut(s) 7, 62, 68, 253
CviKI_1 RGCY 4 cut(s) 7, 62, 68, 253
DpnI GATC 2 cut(s) 57, 135
DpnII GATC 2 cut(s) 55, 133
Eco130I CCWWGG 1 cut(s) 63
EcoT14I CCWWGG 1 cut(s) 63
EcoT22I ATGCAT 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 3 cut(s) 55, 67, 145
FaiI YATR 6 cut(s) 53, 65, 85, 143, 160, 198
FalI AAGNNNNNCTT 1 cut(s) 28
FaqI GGGAC 2 cut(s) 205, 242
FatI CATG 3 cut(s) 51, 63, 141
Fnu4HI GCNGC 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 91
GluI GCNGC 1 cut(s) 91
HaeIII GGCC 1 cut(s) 68
Hin1II CATG 3 cut(s) 55, 67, 145
HphI GGTGA 1 cut(s) 72
Hpy188III TCNNGA 1 cut(s) 131
Hpy99I CGWCG 1 cut(s) 109
HpyAV CCTTC 1 cut(s) 41
HpyCH4V TGCA 4 cut(s) 90, 116, 141, 174
HpyF10VI GCNNNNNNNGC 1 cut(s) 99
Hsp92II CATG 3 cut(s) 55, 67, 145
Kzo9I GATC 2 cut(s) 55, 133
LpnPI CCDG 5 cut(s) 72, 108, 116, 174, 211
Lsp1109I GCAGC 1 cut(s) 102
LweI GCATC 1 cut(s) 128
MalI GATC 2 cut(s) 57, 135
MboI GATC 2 cut(s) 55, 133
MboII GAAGA 2 cut(s) 26, 247
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 3 cut(s) 104, 218, 263
MnlI CCTC 5 cut(s) 32, 52, 55, 80, 102
Mph1103I ATGCAT 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 99
NcoI CCATGG 1 cut(s) 63
NdeII GATC 2 cut(s) 55, 133
NlaIII CATG 3 cut(s) 55, 67, 145
NlaIV GGNNCC 1 cut(s) 57
NsiI ATGCAT 1 cut(s) 143
PkrI GCNGC 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 57
PspPI GGNCC 1 cut(s) 67
PsrI GAACNNNNNNTAC 2 cut(s) 111, 143
PsuI RGATCY 1 cut(s) 55
SatI GCNGC 1 cut(s) 91
Sau3AI GATC 2 cut(s) 55, 133
Sau96I GGNCC 1 cut(s) 67
SduI GDGCHC 3 cut(s) 104, 218, 263
SetI ASST 3 cut(s) 9, 44, 113
SfaNI GCATC 1 cut(s) 128
SfcI CTRYAG 1 cut(s) 223
StyI CCWWGG 1 cut(s) 63
TaqI TCGA 2 cut(s) 104, 136
TseI GCWGC 1 cut(s) 90
TspDTI ATGAA 3 cut(s) 17, 40, 158
Zsp2I ATGCAT 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.