Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002945

Physical Location & Seq

Genomic Coordinates Forward (+)

36682517 .. 36683790

Gene Structure 1274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G426700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGAAGCTCGGCTTTGCAACCTTCCTGCTTGTTTGTCTTCTTCTCAGCTCCTCTGTATTTGAGGCTACAATGGCTGGTTCATCTTTCTGTGACTCCAAGTGTGGGGTGAGATGTTCGAAAGCCGGATATCAGGAGCGGTGCTTGAAGTACTGTGGAATCTGTTGTGAGAAATGCCACTGCGTTCCATCTGGGACTTACGGAAACAAGGACGAGTGCCCTTGCTACAGAGACCTCAAAAACTCCAAGGGCAACCCCAAATGCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

89

Amino Acids

9.59

Weight (kDa)

8.58

Isoelectric Point (pI)

36.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10588 AT1G10588 AT2G39540 AT5G59845
fragaria_vesca	FvH4_2g04680 FvH4_2g33410
malus_domestica	MD05G1093700.v1.1 MD08G1088900.v1.1 MD08G1089100.v1.1 MD08G1089300.v1.1 MD15G1073900.v1.1
prunus_persica	Prupe.1G426700_v2.0.a1 Prupe.1G426700_v2.0.a1 Prupe.8G138400_v2.0.a1 Prupe.8G138400_v2.0.a1 Prupe.8G138600_v2.0.a1
pyrus_communis	pycom05g09280 pycom08g07230 pycom08g07240 pycom08g07260 pycom15g06900
rosa_chinensis	RchiOBHm_Chr6g0254301 RchiOBHm_Chr6g0309121
rosa_multiflora	Rmu_sc0003666.1_g000006 Rmu_sc0005222.1_g000003 Rmu_sc0020102.1_g000002 Rmu_ssc0000412.1_g000016
rosa_roxburghii	Rroxscaffold_7G00159630 Rroxscaffold_7G00210890
rosa_rugosa	Rorug06G0369900
rosa_samantha	Rh6AG482700 Rh6BG491800 Rh6CG061300 Rh6CG496500 Rh6DG483400
rosa_wichuraiana	Rw6G005980 Rw6G006020 Rw6G042030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	136
AciI	CCGC	1 cut(s)	136
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	102
AgsI	TTSAA	1 cut(s)	145
AluBI	AGCT	2 cut(s)	7, 48
AluI	AGCT	2 cut(s)	7, 48
Alw26I	GTCTC	1 cut(s)	222
AsuHPI	GGTGA	1 cut(s)	118
AsuII	TTCGAA	1 cut(s)	116
BaeGI	GKGCMC	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	29
BccI	CCATC	1 cut(s)	193
BcoDI	GTCTC	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	223
BmcAI	AGTACT	1 cut(s)	149
BpiI	GAAGAC	1 cut(s)	29
Bpu14I	TTCGAA	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	243
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	58
BseRI	GAGGAG	1 cut(s)	40
BseSI	GKGCMC	1 cut(s)	218
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	102
BsmAI	GTCTC	1 cut(s)	222
BsmFI	GGGAC	1 cut(s)	205
Bso31I	GGTCTC	1 cut(s)	222
Bsp119I	TTCGAA	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	218
BspACI	CCGC	1 cut(s)	136
BspCNI	CTCAG	1 cut(s)	57
BspT104I	TTCGAA	1 cut(s)	116
BspTNI	GGTCTC	1 cut(s)	222
BsrBI	CCGCTC	1 cut(s)	136
BssECI	CCNNGG	1 cut(s)	243
BssT1I	CCWWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	152
BstBI	TTCGAA	1 cut(s)	116
BstDEI	CTNAG	1 cut(s)	44
BstMAI	GTCTC	1 cut(s)	222
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstSFI	CTRYAG	1 cut(s)	223
BstSLI	GKGCMC	1 cut(s)	218
BstV2I	GAAGAC	1 cut(s)	29
BtsI	GCAGTG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	148
CviJI	RGCY	6 cut(s)	7, 12, 48, 65, 74, 122
CviKI_1	RGCY	6 cut(s)	7, 12, 48, 65, 74, 122
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	243
Eco31I	GGTCTC	1 cut(s)	222
Eco32I	GATATC	1 cut(s)	128
EcoRV	GATATC	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FalI	AAGNNNNNCTT	1 cut(s)	28
FaqI	GGGAC	1 cut(s)	205
HapII	CCGG	1 cut(s)	123
HinfI	GANTC	2 cut(s)	92, 156
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	1 cut(s)	118
Hpy188III	TCNNGA	1 cut(s)	131
HpyAV	CCTTC	1 cut(s)	31
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4V	TGCA	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	1 cut(s)	44
LmnI	GCTCC	2 cut(s)	53, 133
LpnPI	CCDG	5 cut(s)	38, 60, 116, 136, 174
MaeIII	GTNAC	1 cut(s)	89
MbiI	CCGCTC	1 cut(s)	136
MboII	GAAGA	2 cut(s)	29, 32
MhlI	GDGCHC	1 cut(s)	218
MlyI	GAGTC	1 cut(s)	86
MnlI	CCTC	3 cut(s)	55, 61, 242
MseI	TTAA	1 cut(s)	265
MspI	CCGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	71
NmuCI	GTSAC	1 cut(s)	89
NspV	TTCGAA	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	156
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	265
ScaI	AGTACT	1 cut(s)	149
SchI	GAGTC	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	218
SetI	ASST	4 cut(s)	9, 23, 50, 234
SfcI	CTRYAG	1 cut(s)	223
SfuI	TTCGAA	1 cut(s)	116
SsiI	CCGC	1 cut(s)	136
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	152
TaqI	TCGA	1 cut(s)	116
TatI	WGTACW	1 cut(s)	147
TfiI	GAWTC	1 cut(s)	156
Tru1I	TTAA	1 cut(s)	265
Tru9I	TTAA	1 cut(s)	265
TscAI	CASTG	1 cut(s)	182
TseFI	GTSAC	1 cut(s)	89
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	2 cut(s)	17, 69
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	1 cut(s)	182
ZrmI	AGTACT	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.