Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002945

Physical Location & Seq

Genomic Coordinates Forward (+)

24111304 .. 24112100

Gene Structure 797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G59845.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGAAATTCCCGGCTGTAAAAGTTCTTATTATCTCTCTTCTCATCACATCTTCTTTGTTCATACTCTCAACCGCGGATTCGTCACCATGCGGAGGAAAATGCAACGTGAGATGTTCAAAGGCAGGAAGACAAGATAGGTGTCTCAAGTATTGTAATATATGTTGCGAGAAGTGTAACTATTGTGTTCCTTCAGGCACTTATGGAAACAAAGATGAATGCCCTTGTTACCGCGATATGAAGAACTCCAAAGGCACGTCCAAATGTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009505 GO:0030312 GO:0044424 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

89

Amino Acids

9.75

Weight (kDa)

8.97

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GASA	PF02704	30 - 89	3.1e-22	Gibberellin regulated protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10588 AT1G10588 AT2G39540 AT5G59845
fragaria_vesca	FvH4_2g04680 FvH4_2g33410
malus_domestica	MD05G1093700.v1.1 MD08G1088900.v1.1 MD08G1089100.v1.1 MD08G1089300.v1.1 MD15G1073900.v1.1
prunus_persica	Prupe.1G426700_v2.0.a1 Prupe.1G426700_v2.0.a1 Prupe.8G138400_v2.0.a1 Prupe.8G138400_v2.0.a1 Prupe.8G138600_v2.0.a1
pyrus_communis	pycom05g09280 pycom08g07230 pycom08g07240 pycom08g07260 pycom15g06900
rosa_chinensis	RchiOBHm_Chr6g0254301 RchiOBHm_Chr6g0309121
rosa_multiflora	Rmu_sc0003666.1_g000006 Rmu_sc0005222.1_g000003 Rmu_sc0020102.1_g000002 Rmu_ssc0000412.1_g000016
rosa_roxburghii	Rroxscaffold_7G00159630 Rroxscaffold_7G00210890
rosa_rugosa	Rorug06G0369900
rosa_samantha	Rh6AG482700 Rh6BG491800 Rh6CG061300 Rh6CG496500 Rh6DG483400
rosa_wichuraiana	Rw6G005980 Rw6G006020 Rw6G042030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	74, 231
AciI	CCGC	4 cut(s)	72, 74, 90, 229
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	174
AfiI	CCNNNNNNNGG	1 cut(s)	92
AgsI	TTSAA	1 cut(s)	117
AjiI	CACGTC	1 cut(s)	255
Alw26I	GTCTC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	5
AsuC2I	CCSGG	1 cut(s)	11
AsuHPI	GGTGA	1 cut(s)	75
BbsI	GAAGAC	1 cut(s)	133
BcnI	CCSGG	1 cut(s)	11
BcoDI	GTCTC	1 cut(s)	146
Bme1390I	CCNGG	1 cut(s)	11
BmgBI	CACGTC	1 cut(s)	255
BmrFI	CCNGG	1 cut(s)	11
BpiI	GAAGAC	1 cut(s)	133
BpuEI	CTTGAG	1 cut(s)	128
BpuMI	CCSGG	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	92
Bsh1236I	CGCG	2 cut(s)	74, 231
BsiSI	CCGG	1 cut(s)	11
BslI	CCNNNNNNNGG	1 cut(s)	92
BsmAI	GTCTC	1 cut(s)	146
BsmI	GAATGC	1 cut(s)	221
BspACI	CCGC	4 cut(s)	72, 74, 90, 229
BspFNI	CGCG	2 cut(s)	74, 231
BssECI	CCNNGG	1 cut(s)	72
Bst6I	CTCTTC	1 cut(s)	42
BstDSI	CCRYGG	1 cut(s)	72
BstFNI	CGCG	2 cut(s)	74, 231
BstMAI	GTCTC	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	9
BstUI	CGCG	2 cut(s)	74, 231
BstV2I	GAAGAC	1 cut(s)	133
BtgI	CCRYGG	1 cut(s)	72
BtrI	CACGTC	1 cut(s)	255
Cfr42I	CCGCGG	1 cut(s)	75
CviAII	CATG	1 cut(s)	87
CviJI	RGCY	1 cut(s)	14
CviKI_1	RGCY	1 cut(s)	14
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco57I	CTGAAG	1 cut(s)	174
FaeI	CATG	1 cut(s)	90
FaiI	YATR	6 cut(s)	62, 88, 158, 160, 201, 236
FatI	CATG	1 cut(s)	86
HapII	CCGG	1 cut(s)	11
Hin1II	CATG	1 cut(s)	90
HinfI	GANTC	1 cut(s)	77
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	1 cut(s)	75
HpyAV	CCTTC	1 cut(s)	198
HpyCH4IV	ACGT	2 cut(s)	105, 254
HpyCH4V	TGCA	1 cut(s)	102
HpySE526I	ACGT	2 cut(s)	105, 254
Hsp92II	CATG	1 cut(s)	90
KspI	CCGCGG	1 cut(s)	75
LpnPI	CCDG	3 cut(s)	24, 108, 177
MaeII	ACGT	2 cut(s)	105, 254
MaeIII	GTNAC	3 cut(s)	81, 173, 224
MboII	GAAGA	4 cut(s)	29, 42, 138, 250
MluCI	AATT	1 cut(s)	5
MnlI	CCTC	1 cut(s)	86
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	1 cut(s)	11
Mva1269I	GAATGC	1 cut(s)	221
MvnI	CGCG	2 cut(s)	74, 231
NciI	CCSGG	1 cut(s)	11
NlaIII	CATG	1 cut(s)	90
NmuCI	GTSAC	1 cut(s)	81
PctI	GAATGC	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	77
SacII	CCGCGG	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	11
SetI	ASST	3 cut(s)	108, 140, 257
Sfr303I	CCGCGG	1 cut(s)	75
SgrBI	CCGCGG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	1 cut(s)	5
SsiI	CCGC	4 cut(s)	72, 74, 90, 229
StyD4I	CCNGG	1 cut(s)	9
TaiI	ACGT	2 cut(s)	108, 257
TasI	AATT	1 cut(s)	5
TfiI	GAWTC	1 cut(s)	77
TseFI	GTSAC	1 cut(s)	81
Tsp45I	GTSAC	1 cut(s)	81
TspDTI	ATGAA	4 cut(s)	17, 49, 228, 251
XapI	RAATTY	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.