Rroxscaffold_7G00159630

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002945
Physical Location & Seq
Forward (+)
2768576 .. 2768935
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00159630.1

Sequence Viewer

Length: 243 bp
ATGCTTGTTTGCCTTGTTCTCGGCTCATCTGTGTTTGAGACCACAATGGCTGGTTCACCTTTCTGCGACTCAAAGTGTGGGGTGAGATGTTCGAAAGCTGGATACAAAGATCGGTGCTTGAAGTACTGTGGAATCTGCTGCGAGAAATGCAACTGCGTTCCTTCTGGGACTTACGGAAACAAGGACGAATGCCCTTGCTACAGGGACCTCAAGAACTCCAAGGGAAACCCCAAGTGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

80

Amino Acids

8.67

Weight (kDa)

8.58

Isoelectric Point (pI)

34.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 22 - 80 4.3e-24 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 125
AgsI TTSAA 1 cut(s) 121
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
Alw26I GTCTC 1 cut(s) 32
ApeKI GCWGC 1 cut(s) 138
AspS9I GGNCC 1 cut(s) 205
AsuHPI GGTGA 2 cut(s) 48, 94
AsuII TTCGAA 1 cut(s) 92
AvaII GGWCC 1 cut(s) 205
BaeGI GKGCMC 1 cut(s) 239
BbvI GCAGC 1 cut(s) 125
BciVI GTATCC 1 cut(s) 95
BcoDI GTCTC 1 cut(s) 32
BfmI CTRYAG 1 cut(s) 199
BfuI GTATCC 1 cut(s) 95
BisI GCNGC 1 cut(s) 139
BlsI GCNGC 1 cut(s) 140
BmcAI AGTACT 1 cut(s) 125
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 206
Bpu14I TTCGAA 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 194
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 219
BseDI CCNNGG 1 cut(s) 219
BseSI GKGCMC 1 cut(s) 239
BseXI GCAGC 1 cut(s) 125
BslFI GGGAC 2 cut(s) 181, 218
BsmAI GTCTC 1 cut(s) 32
BsmFI GGGAC 2 cut(s) 181, 218
BsmI GAATGC 1 cut(s) 194
Bso31I GGTCTC 1 cut(s) 32
Bsp119I TTCGAA 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 239
Bsp143I GATC 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 206
BspT104I TTCGAA 1 cut(s) 92
BspTNI GGTCTC 1 cut(s) 32
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 128
BstBI TTCGAA 1 cut(s) 92
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 1 cut(s) 147
BstSFI CTRYAG 1 cut(s) 199
BstSLI GKGCMC 1 cut(s) 239
BstV1I GCAGC 1 cut(s) 125
BsuI GTATCC 1 cut(s) 95
Cfr13I GGNCC 1 cut(s) 205
Csp6I GTAC 1 cut(s) 124
CviJI RGCY 3 cut(s) 24, 50, 98
CviKI_1 RGCY 3 cut(s) 24, 50, 98
CviQI GTAC 1 cut(s) 124
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 219
Eco31I GGTCTC 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 205
EcoO109I RGGNCCY 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FaqI GGGAC 2 cut(s) 181, 218
Fnu4HI GCNGC 1 cut(s) 139
Fsp4HI GCNGC 1 cut(s) 139
GluI GCNGC 1 cut(s) 139
HinfI GANTC 2 cut(s) 68, 132
HphI GGTGA 2 cut(s) 48, 94
Hpy166II GTNNAC 1 cut(s) 56
Hpy188III TCNNGA 1 cut(s) 211
Hpy8I GTNNAC 1 cut(s) 56
HpyAV CCTTC 1 cut(s) 171
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4V TGCA 1 cut(s) 150
HpyF10VI GCNNNNNNNGC 1 cut(s) 147
Kzo9I GATC 1 cut(s) 109
LpnPI CCDG 4 cut(s) 36, 84, 150, 187
Lsp1109I GCAGC 1 cut(s) 125
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 239
MlyI GAGTC 1 cut(s) 62
MnlI CCTC 1 cut(s) 218
MseI TTAA 1 cut(s) 241
Mva1269I GAATGC 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 147
NdeII GATC 1 cut(s) 109
NlaIV GGNNCC 1 cut(s) 206
NspV TTCGAA 1 cut(s) 92
PctI GAATGC 1 cut(s) 194
PfeI GAWTC 1 cut(s) 132
PkrI GCNGC 1 cut(s) 140
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
PpuMI RGGWCCY 1 cut(s) 205
Psp5II RGGWCCY 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 206
PspPI GGNCC 1 cut(s) 205
PspPPI RGGWCCY 1 cut(s) 205
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SaqAI TTAA 1 cut(s) 241
SatI GCNGC 1 cut(s) 139
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 1 cut(s) 205
ScaI AGTACT 1 cut(s) 125
SchI GAGTC 1 cut(s) 62
SduI GDGCHC 1 cut(s) 239
SetI ASST 3 cut(s) 61, 100, 210
SfcI CTRYAG 1 cut(s) 199
SfuI TTCGAA 1 cut(s) 92
SinI GGWCC 1 cut(s) 205
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 128
TaqI TCGA 1 cut(s) 92
TatI WGTACW 1 cut(s) 123
TfiI GAWTC 1 cut(s) 132
Tru1I TTAA 1 cut(s) 241
Tru9I TTAA 1 cut(s) 241
TseI GCWGC 1 cut(s) 138
TspGWI ACGGA 1 cut(s) 189
VpaK11BI GGWCC 1 cut(s) 205
ZrmI AGTACT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.