Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002945

Physical Location & Seq

Genomic Coordinates Forward (+)

51653818 .. 51654342

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0369900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGAGTTGGATAGGATCAGCAATCTACCAAGTAATGTTATAGAAAAGATATTGTCACATTTGCCAATTAGCGTTGCAGCGAGGACAAGTGTTTTGTCAAGCAAGTGGAGATACAAATTTGCTATGCTTCCGCATCTTGTGTTTGGTTGTTTGTGCCGCTCGAACGTTGTTGATCATGTACTCTTAAATCACGTTGGCCCCATAAGCAAGTTCCGGCTTGTTCAAGGACTTATAGACATTGGAGATATTGATCGCTGGGTTCTTCATCTGTCAAGGTACTCGCTCAAAGAGTTCATACTGCAAATTTCGGTTTGGCAACAGCAGCGCTACAAGATTCCATCATGCATATTTTCATGTCATGATATGATTCACTTAAAGTTGAGTTGTTGTCTGCTAAAACCCCCCTCGACATTCAAAGGGTTTAGGAGTTTGAAGTGCCTTGCATTTGCAAAGATTACCATGGCCCAAGATGTGTTCGAACATTTGATTGTTTGTGTTGACGTGAGTAATGCTGGAGGCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

174

Amino Acids

19.79

Weight (kDa)

9.22

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	6 - 41	2.7e-06	F-box domain
LRR_At5g56370	PF24758	83 - 165	7.9e-06	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10588 AT1G10588 AT2G39540 AT5G59845
fragaria_vesca	FvH4_2g04680 FvH4_2g33410
malus_domestica	MD05G1093700.v1.1 MD08G1088900.v1.1 MD08G1089100.v1.1 MD08G1089300.v1.1 MD15G1073900.v1.1
prunus_persica	Prupe.1G426700_v2.0.a1 Prupe.1G426700_v2.0.a1 Prupe.8G138400_v2.0.a1 Prupe.8G138400_v2.0.a1 Prupe.8G138600_v2.0.a1
pyrus_communis	pycom05g09280 pycom08g07230 pycom08g07240 pycom08g07260 pycom15g06900
rosa_chinensis	RchiOBHm_Chr6g0254301 RchiOBHm_Chr6g0309121
rosa_multiflora	Rmu_sc0003666.1_g000006 Rmu_sc0005222.1_g000003 Rmu_sc0020102.1_g000002 Rmu_ssc0000412.1_g000016
rosa_roxburghii	Rroxscaffold_7G00159630 Rroxscaffold_7G00210890
rosa_rugosa	Rorug06G0369900
rosa_samantha	Rh6AG482700 Rh6BG491800 Rh6CG061300 Rh6CG496500 Rh6DG483400
rosa_wichuraiana	Rw6G005980 Rw6G006020 Rw6G042030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	159
AciI	CCGC	2 cut(s)	131, 157
AclI	AACGTT	1 cut(s)	165
AclWI	GGATC	1 cut(s)	23
AcsI	RAATTY	2 cut(s)	116, 303
AfaI	GTAC	2 cut(s)	180, 278
AfeI	AGCGCT	1 cut(s)	326
AgsI	TTSAA	3 cut(s)	224, 415, 433
AjiI	CACGTC	1 cut(s)	502
AlwI	GGATC	1 cut(s)	23
Aor51HI	AGCGCT	1 cut(s)	326
AoxI	GGCC	3 cut(s)	196, 462, 517
ApeKI	GCWGC	2 cut(s)	77, 322
ApoI	RAATTY	2 cut(s)	116, 303
ArsI	GACNNNNNNTTYG	2 cut(s)	76, 108
AspLEI	GCGC	1 cut(s)	327
AspS9I	GGNCC	2 cut(s)	197, 463
AsuII	TTCGAA	1 cut(s)	477
BbvI	GCAGC	2 cut(s)	89, 334
BccI	CCATC	1 cut(s)	346
BclI	TGATCA	1 cut(s)	172
BfoI	RGCGCY	1 cut(s)	328
BisI	GCNGC	3 cut(s)	78, 157, 323
BlsI	GCNGC	3 cut(s)	79, 158, 324
BmgBI	CACGTC	1 cut(s)	502
BmgT120I	GGNCC	2 cut(s)	197, 463
BmiI	GGNNCC	1 cut(s)	199
BmsI	GCATC	1 cut(s)	142
Bpu14I	TTCGAA	1 cut(s)	477
BsaBI	GATNNNNATC	1 cut(s)	249
BsaJI	CCNNGG	1 cut(s)	459
Bse8I	GATNNNNATC	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	459
BseJI	GATNNNNATC	1 cut(s)	249
BseXI	GCAGC	2 cut(s)	89, 334
BseYI	CCCAGC	1 cut(s)	255
BshFI	GGCC	3 cut(s)	198, 464, 519
BsiSI	CCGG	1 cut(s)	214
BsnI	GGCC	3 cut(s)	198, 464, 519
Bsp119I	TTCGAA	1 cut(s)	477
Bsp143I	GATC	3 cut(s)	15, 172, 250
Bsp19I	CCATGG	1 cut(s)	459
BspACI	CCGC	2 cut(s)	131, 157
BspANI	GGCC	3 cut(s)	198, 464, 519
BspHI	TCATGA	1 cut(s)	358
BspLI	GGNNCC	1 cut(s)	199
BspPI	GGATC	1 cut(s)	23
BspT104I	TTCGAA	1 cut(s)	477
BsrBI	CCGCTC	1 cut(s)	159
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	3 cut(s)	15, 172, 250
BssT1I	CCWWGG	1 cut(s)	459
BstBI	TTCGAA	1 cut(s)	477
BstDSI	CCRYGG	1 cut(s)	459
BstH2I	RGCGCY	1 cut(s)	328
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	3 cut(s)	18, 175, 253
BstMBI	GATC	3 cut(s)	15, 172, 250
BstMWI	GCNNNNNNNGC	2 cut(s)	204, 322
BstV1I	GCAGC	2 cut(s)	89, 334
BsuRI	GGCC	3 cut(s)	198, 464, 519
BtgI	CCRYGG	1 cut(s)	459
BtrI	CACGTC	1 cut(s)	502
CciI	TCATGA	1 cut(s)	358
CfoI	GCGC	1 cut(s)	327
Cfr13I	GGNCC	2 cut(s)	197, 463
Csp6I	GTAC	2 cut(s)	179, 277
CviAII	CATG	5 cut(s)	176, 342, 354, 359, 460
CviJI	RGCY	4 cut(s)	198, 217, 464, 519
CviKI_1	RGCY	4 cut(s)	198, 217, 464, 519
CviQI	GTAC	2 cut(s)	179, 277
DpnI	GATC	3 cut(s)	17, 174, 252
DpnII	GATC	3 cut(s)	15, 172, 250
Eco130I	CCWWGG	1 cut(s)	459
Eco47III	AGCGCT	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	459
EcoT22I	ATGCAT	1 cut(s)	347
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	5 cut(s)	179, 345, 357, 362, 463
FatI	CATG	5 cut(s)	175, 341, 353, 358, 459
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	3 cut(s)	78, 157, 323
Fsp4HI	GCNGC	3 cut(s)	78, 157, 323
GlaI	GCGC	1 cut(s)	326
GluI	GCNGC	3 cut(s)	78, 157, 323
GsaI	CCCAGC	1 cut(s)	259
HaeII	RGCGCY	1 cut(s)	328
HaeIII	GGCC	3 cut(s)	198, 464, 519
HapII	CCGG	1 cut(s)	214
HhaI	GCGC	1 cut(s)	327
Hin1II	CATG	5 cut(s)	179, 345, 357, 362, 463
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HinfI	GANTC	2 cut(s)	334, 367
HpaII	CCGG	1 cut(s)	214
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188III	TCNNGA	1 cut(s)	359
Hpy8I	GTNNAC	1 cut(s)	499
HpyCH4IV	ACGT	3 cut(s)	165, 192, 501
HpyCH4V	TGCA	5 cut(s)	77, 301, 345, 443, 449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	204, 322
HpySE526I	ACGT	3 cut(s)	165, 192, 501
Hsp92II	CATG	5 cut(s)	179, 345, 357, 362, 463
HspAI	GCGC	1 cut(s)	325
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	3 cut(s)	15, 172, 250
LpnPI	CCDG	3 cut(s)	227, 241, 498
Lsp1109I	GCAGC	2 cut(s)	89, 334
LweI	GCATC	1 cut(s)	142
MaeII	ACGT	3 cut(s)	165, 192, 501
MaeIII	GTNAC	1 cut(s)	54
MalI	GATC	3 cut(s)	17, 174, 252
MbiI	CCGCTC	1 cut(s)	159
MboI	GATC	3 cut(s)	15, 172, 250
MboII	GAAGA	1 cut(s)	254
MluCI	AATT	3 cut(s)	66, 116, 303
MnlI	CCTC	3 cut(s)	75, 415, 509
Mph1103I	ATGCAT	1 cut(s)	347
MseI	TTAA	2 cut(s)	185, 374
MspI	CCGG	1 cut(s)	214
MwoI	GCNNNNNNNGC	2 cut(s)	204, 322
NcoI	CCATGG	1 cut(s)	459
NdeII	GATC	3 cut(s)	15, 172, 250
NlaIII	CATG	5 cut(s)	179, 345, 357, 362, 463
NlaIV	GGNNCC	1 cut(s)	199
NmuCI	GTSAC	1 cut(s)	54
NsiI	ATGCAT	1 cut(s)	347
NspV	TTCGAA	1 cut(s)	477
PagI	TCATGA	1 cut(s)	358
PfeI	GAWTC	2 cut(s)	334, 367
PkrI	GCNGC	3 cut(s)	79, 158, 324
Psp1406I	AACGTT	1 cut(s)	165
PspFI	CCCAGC	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	2 cut(s)	197, 463
RsaI	GTAC	2 cut(s)	180, 278
RsaNI	GTAC	2 cut(s)	179, 277
SaqAI	TTAA	2 cut(s)	185, 374
SatI	GCNGC	3 cut(s)	78, 157, 323
Sau3AI	GATC	3 cut(s)	15, 172, 250
Sau96I	GGNCC	2 cut(s)	197, 463
SetI	ASST	4 cut(s)	168, 195, 278, 504
SfaNI	GCATC	1 cut(s)	142
SfuI	TTCGAA	1 cut(s)	477
Sse9I	AATT	3 cut(s)	66, 116, 303
SsiI	CCGC	2 cut(s)	131, 157
StyI	CCWWGG	1 cut(s)	459
TaiI	ACGT	3 cut(s)	168, 195, 504
TaqI	TCGA	3 cut(s)	161, 407, 477
TasI	AATT	3 cut(s)	66, 116, 303
TatI	WGTACW	1 cut(s)	178
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	2 cut(s)	334, 367
Tru1I	TTAA	2 cut(s)	185, 374
Tru9I	TTAA	2 cut(s)	185, 374
TseFI	GTSAC	1 cut(s)	54
TseI	GCWGC	2 cut(s)	77, 322
Tsp45I	GTSAC	1 cut(s)	54
TspDTI	ATGAA	3 cut(s)	254, 283, 342
XapI	RAATTY	2 cut(s)	116, 303
Zsp2I	ATGCAT	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.