FvH4_2g33410

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002945
Physical Location & Seq
Forward (+)
25073980 .. 25074363
384 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g33410.t1

Sequence Viewer

Length: 267 bp
ATGAAGCTCGTCTTCGCAACCTTCATGCTTGTTTTCCTTGTTCTAGGCTCTTCTGTGTTTGAGACCACAATGGCCGGTTCACATTTCTGTGACTCAAAGTGCGGGGTGAGATGTTCGAAAGCCGGATACAAAGAGCGGTGCTTGAAGTACTGTGGAATCTGCTGCGATAAATGCAACTGTGTTCCATCTGGGACTTACGGAAACAAGGACGAATGCCCTTGCTACAGGGACCTCAAGAACTCCAAGGGTGACCCCAAGTGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

89

Amino Acids

9.69

Weight (kDa)

8.61

Isoelectric Point (pI)

25.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 30 - 88 7.4e-24 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 136
AciI CCGC 2 cut(s) 102, 136
AcoI YGGCCR 1 cut(s) 72
AfaI GTAC 1 cut(s) 149
AgsI TTSAA 1 cut(s) 145
AluBI AGCT 1 cut(s) 7
AluI AGCT 1 cut(s) 7
Alw26I GTCTC 1 cut(s) 56
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 229
AsuHPI GGTGA 2 cut(s) 118, 260
AsuII TTCGAA 1 cut(s) 116
AvaII GGWCC 1 cut(s) 229
BaeGI GKGCMC 1 cut(s) 263
BbsI GAAGAC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 149
BccI CCATC 1 cut(s) 193
BciVI GTATCC 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 1 cut(s) 44
BfmI CTRYAG 1 cut(s) 223
BfuI GTATCC 1 cut(s) 119
BisI GCNGC 1 cut(s) 163
BlsI GCNGC 1 cut(s) 164
BmcAI AGTACT 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 229
BmiI GGNNCC 1 cut(s) 230
BpiI GAAGAC 1 cut(s) 4
Bpu14I TTCGAA 1 cut(s) 116
BpuEI CTTGAG 1 cut(s) 218
BsaI GGTCTC 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 243
Bse118I RCCGGY 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 243
BseSI GKGCMC 1 cut(s) 263
BseXI GCAGC 1 cut(s) 149
BshFI GGCC 1 cut(s) 74
BsiSI CCGG 2 cut(s) 75, 123
BslFI GGGAC 2 cut(s) 205, 242
BsmAI GTCTC 1 cut(s) 56
BsmFI GGGAC 2 cut(s) 205, 242
BsmI GAATGC 1 cut(s) 218
BsnI GGCC 1 cut(s) 74
Bso31I GGTCTC 1 cut(s) 56
Bsp119I TTCGAA 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 263
BspACI CCGC 2 cut(s) 102, 136
BspANI GGCC 1 cut(s) 74
BspLI GGNNCC 1 cut(s) 230
BspQI GCTCTTC 1 cut(s) 55
BspT104I TTCGAA 1 cut(s) 116
BspTNI GGTCTC 1 cut(s) 56
BsrBI CCGCTC 1 cut(s) 136
BsrFI RCCGGY 1 cut(s) 74
BssAI RCCGGY 1 cut(s) 74
BssECI CCNNGG 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 243
Bst4CI ACNGT 2 cut(s) 152, 179
Bst6I CTCTTC 1 cut(s) 55
BstBI TTCGAA 1 cut(s) 116
BstEII GGTNACC 1 cut(s) 248
BstMAI GTCTC 1 cut(s) 56
BstMWI GCNNNNNNNGC 1 cut(s) 171
BstPI GGTNACC 1 cut(s) 248
BstSFI CTRYAG 1 cut(s) 223
BstSLI GKGCMC 1 cut(s) 263
BstV1I GCAGC 1 cut(s) 149
BstV2I GAAGAC 1 cut(s) 4
BsuI GTATCC 1 cut(s) 119
BsuRI GGCC 1 cut(s) 74
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 1 cut(s) 229
Csp6I GTAC 1 cut(s) 148
CviAII CATG 1 cut(s) 25
CviJI RGCY 4 cut(s) 7, 48, 74, 122
CviKI_1 RGCY 4 cut(s) 7, 48, 74, 122
CviQI GTAC 1 cut(s) 148
EaeI YGGCCR 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 243
Eco31I GGTCTC 1 cut(s) 56
Eco47I GGWCC 1 cut(s) 229
Eco91I GGTNACC 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 229
EcoO65I GGTNACC 1 cut(s) 248
EcoT14I CCWWGG 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 1 cut(s) 28
FaiI YATR 1 cut(s) 26
FalI AAGNNNNNCTT 1 cut(s) 28
FaqI GGGAC 2 cut(s) 205, 242
FatI CATG 1 cut(s) 24
FauI CCCGC 1 cut(s) 95
Fnu4HI GCNGC 1 cut(s) 163
Fsp4HI GCNGC 1 cut(s) 163
FspBI CTAG 1 cut(s) 44
GluI GCNGC 1 cut(s) 163
HaeIII GGCC 1 cut(s) 74
HapII CCGG 2 cut(s) 75, 123
Hin1II CATG 1 cut(s) 28
HinfI GANTC 2 cut(s) 92, 156
HpaII CCGG 2 cut(s) 75, 123
HphI GGTGA 2 cut(s) 118, 260
Hpy166II GTNNAC 1 cut(s) 80
Hpy188III TCNNGA 1 cut(s) 235
Hpy8I GTNNAC 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 2 cut(s) 152, 179
HpyCH4V TGCA 1 cut(s) 174
HpyF10VI GCNNNNNNNGC 1 cut(s) 171
Hsp92II CATG 1 cut(s) 28
LguI GCTCTTC 1 cut(s) 55
LpnPI CCDG 4 cut(s) 88, 136, 174, 211
Lsp1109I GCAGC 1 cut(s) 149
MaeI CTAG 1 cut(s) 44
MaeIII GTNAC 2 cut(s) 89, 248
MbiI CCGCTC 1 cut(s) 136
MboII GAAGA 2 cut(s) 4, 42
MhlI GDGCHC 1 cut(s) 263
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 1 cut(s) 242
MslI CAYNNNNRTG 1 cut(s) 87
MspI CCGG 2 cut(s) 75, 123
Mva1269I GAATGC 1 cut(s) 218
MwoI GCNNNNNNNGC 1 cut(s) 171
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 1 cut(s) 230
NmuCI GTSAC 2 cut(s) 89, 248
NspV TTCGAA 1 cut(s) 116
PciSI GCTCTTC 1 cut(s) 55
PctI GAATGC 1 cut(s) 218
PfeI GAWTC 1 cut(s) 156
PkrI GCNGC 1 cut(s) 164
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
PpuMI RGGWCCY 1 cut(s) 229
Psp5II RGGWCCY 1 cut(s) 229
PspEI GGTNACC 1 cut(s) 248
PspN4I GGNNCC 1 cut(s) 230
PspPI GGNCC 1 cut(s) 229
PspPPI RGGWCCY 1 cut(s) 229
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 87
SapI GCTCTTC 1 cut(s) 55
SatI GCNGC 1 cut(s) 163
Sau96I GGNCC 1 cut(s) 229
ScaI AGTACT 1 cut(s) 149
SchI GAGTC 1 cut(s) 86
SduI GDGCHC 1 cut(s) 263
SetI ASST 3 cut(s) 9, 23, 234
SfcI CTRYAG 1 cut(s) 223
SfuI TTCGAA 1 cut(s) 116
SinI GGWCC 1 cut(s) 229
SmiMI CAYNNNNRTG 1 cut(s) 87
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
SsiI CCGC 2 cut(s) 102, 136
SspMI CTAG 1 cut(s) 44
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 2 cut(s) 152, 179
TaqI TCGA 1 cut(s) 116
TatI WGTACW 1 cut(s) 147
TfiI GAWTC 1 cut(s) 156
TseFI GTSAC 2 cut(s) 89, 248
TseI GCWGC 1 cut(s) 162
Tsp45I GTSAC 2 cut(s) 89, 248
TspDTI ATGAA 2 cut(s) 13, 17
TspGWI ACGGA 1 cut(s) 213
VpaK11BI GGWCC 1 cut(s) 229
XspI CTAG 1 cut(s) 44
ZrmI AGTACT 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.