Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005222.1

Orthogroup ID

OG0002945

Physical Location & Seq

Genomic Coordinates Reverse (-)

8440 .. 8945

Gene Structure 506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005222.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atgtctaacctctataacacacacccaaaaggccaaaacgtttcagaaaccggccagttcaacacttggtgctcttccggccgttcatctccattcaactatctcttgtcgttctccgtgaaaatgaagctcgtcgtcgcaacattcatgcttgtttgccttgttctcggctcatctgtgtttgagaccacaatggctggttcacctttctgcgactcaaagtgtggggtgagatgttcgaaagctggatacatggatcggtgcttgaagtactgtggaatatgctgcgagaaatgcaactgcgttccttctgggacttacggaaacaaggacgaatgtccttgttacagggacctcaagaactccaagggaaaccccaagtgcccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

129

Amino Acids

14.16

Weight (kDa)

8.76

Isoelectric Point (pI)

42.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10588 AT1G10588 AT2G39540 AT5G59845
fragaria_vesca	FvH4_2g04680 FvH4_2g33410
malus_domestica	MD05G1093700.v1.1 MD08G1088900.v1.1 MD08G1089100.v1.1 MD08G1089300.v1.1 MD15G1073900.v1.1
prunus_persica	Prupe.1G426700_v2.0.a1 Prupe.1G426700_v2.0.a1 Prupe.8G138400_v2.0.a1 Prupe.8G138400_v2.0.a1 Prupe.8G138600_v2.0.a1
pyrus_communis	pycom05g09280 pycom08g07230 pycom08g07240 pycom08g07260 pycom15g06900
rosa_chinensis	RchiOBHm_Chr6g0254301 RchiOBHm_Chr6g0309121
rosa_multiflora	Rmu_sc0003666.1_g000006 Rmu_sc0005222.1_g000003 Rmu_sc0020102.1_g000002 Rmu_ssc0000412.1_g000016
rosa_roxburghii	Rroxscaffold_7G00159630 Rroxscaffold_7G00210890
rosa_rugosa	Rorug06G0369900
rosa_samantha	Rh6AG482700 Rh6BG491800 Rh6CG061300 Rh6CG496500 Rh6DG483400
rosa_wichuraiana	Rw6G005980 Rw6G006020 Rw6G042030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	39
AclWI	GGATC	1 cut(s)	264
AcoI	YGGCCR	2 cut(s)	52, 79
AdeI	CACNNNGTG	1 cut(s)	69
AfaI	GTAC	1 cut(s)	272
AgsI	TTSAA	3 cut(s)	61, 97, 268
AluBI	AGCT	2 cut(s)	130, 245
AluI	AGCT	2 cut(s)	130, 245
Alw21I	GWGCWC	1 cut(s)	74
Alw26I	GTCTC	1 cut(s)	179
AlwI	GGATC	1 cut(s)	264
AoxI	GGCC	3 cut(s)	31, 52, 79
ApeKI	GCWGC	1 cut(s)	285
AspS9I	GGNCC	1 cut(s)	352
AsuHPI	GGTGA	2 cut(s)	195, 241
AsuII	TTCGAA	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	352
BaeGI	GKGCMC	1 cut(s)	386
Bbv12I	GWGCWC	1 cut(s)	74
BbvI	GCAGC	1 cut(s)	272
BceAI	ACGGC	1 cut(s)	66
BciVI	GTATCC	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	179
BfuI	GTATCC	1 cut(s)	242
BisI	GCNGC	1 cut(s)	286
BlsI	GCNGC	1 cut(s)	287
BmcAI	AGTACT	1 cut(s)	272
Bme18I	GGWCC	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	352
BmiI	GGNNCC	1 cut(s)	353
BoxI	GACNNNNGTC	1 cut(s)	336
Bpu14I	TTCGAA	1 cut(s)	239
BpuEI	CTTGAG	1 cut(s)	341
BsaI	GGTCTC	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	366
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	366
BseNI	ACTGG	1 cut(s)	55
BseSI	GKGCMC	1 cut(s)	386
BseX3I	CGGCCG	1 cut(s)	79
BseXI	GCAGC	1 cut(s)	272
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	3 cut(s)	33, 54, 81
BsiEI	CGRYCG	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	74
BsiSI	CCGG	2 cut(s)	51, 78
BslFI	GGGAC	2 cut(s)	328, 365
BsmAI	GTCTC	1 cut(s)	179
BsmFI	GGGAC	2 cut(s)	328, 365
BsnI	GGCC	3 cut(s)	33, 54, 81
Bso31I	GGTCTC	1 cut(s)	179
Bsp119I	TTCGAA	1 cut(s)	239
Bsp1286I	GDGCHC	2 cut(s)	74, 386
Bsp143I	GATC	1 cut(s)	256
BspANI	GGCC	3 cut(s)	33, 54, 81
BspLI	GGNNCC	1 cut(s)	353
BspPI	GGATC	1 cut(s)	264
BspQI	GCTCTTC	1 cut(s)	79
BspT104I	TTCGAA	1 cut(s)	239
BspTNI	GGTCTC	1 cut(s)	179
BsrFI	RCCGGY	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	55
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	1 cut(s)	256
BssT1I	CCWWGG	1 cut(s)	366
Bst4CI	ACNGT	1 cut(s)	275
Bst6I	CTCTTC	1 cut(s)	79
BstBI	TTCGAA	1 cut(s)	239
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	1 cut(s)	256
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 294
BstPAI	GACNNNNGTC	1 cut(s)	336
BstSLI	GKGCMC	1 cut(s)	386
BstV1I	GCAGC	1 cut(s)	272
BstZI	CGGCCG	1 cut(s)	79
BsuI	GTATCC	1 cut(s)	242
BsuRI	GGCC	3 cut(s)	33, 54, 81
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	352
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	2 cut(s)	148, 253
CviJI	RGCY	7 cut(s)	33, 54, 81, 130, 171, 197, 245
CviKI_1	RGCY	7 cut(s)	33, 54, 81, 130, 171, 197, 245
CviQI	GTAC	1 cut(s)	271
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
DraIII	CACNNNGTG	1 cut(s)	69
EaeI	YGGCCR	2 cut(s)	52, 79
EagI	CGGCCG	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	79
EarI	CTCTTC	1 cut(s)	79
EclXI	CGGCCG	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	366
Eco31I	GGTCTC	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	352
Eco52I	CGGCCG	1 cut(s)	79
EcoO109I	RGGNCCY	1 cut(s)	352
EcoT14I	CCWWGG	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	2 cut(s)	151, 256
FaiI	YATR	4 cut(s)	15, 149, 254, 283
FaqI	GGGAC	2 cut(s)	328, 365
FatI	CATG	2 cut(s)	147, 252
Fnu4HI	GCNGC	1 cut(s)	286
Fsp4HI	GCNGC	1 cut(s)	286
GluI	GCNGC	1 cut(s)	286
HaeIII	GGCC	3 cut(s)	33, 54, 81
HapII	CCGG	2 cut(s)	51, 78
Hin1II	CATG	2 cut(s)	151, 256
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	2 cut(s)	51, 78
HphI	GGTGA	2 cut(s)	195, 241
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	1 cut(s)	358
Hpy8I	GTNNAC	1 cut(s)	203
Hpy99I	CGWCG	2 cut(s)	137, 140
HpyAV	CCTTC	1 cut(s)	318
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	1 cut(s)	297
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 294
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	151, 256
Kzo9I	GATC	1 cut(s)	256
LguI	GCTCTTC	1 cut(s)	79
LpnPI	CCDG	7 cut(s)	64, 68, 91, 183, 231, 297, 334
Lsp1109I	GCAGC	1 cut(s)	272
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	1 cut(s)	66
MhlI	GDGCHC	2 cut(s)	74, 386
MlyI	GAGTC	1 cut(s)	209
MnlI	CCTC	2 cut(s)	20, 365
MseI	TTAA	1 cut(s)	388
MspI	CCGG	2 cut(s)	51, 78
MwoI	GCNNNNNNNGC	2 cut(s)	78, 294
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	2 cut(s)	151, 256
NlaIV	GGNNCC	1 cut(s)	353
NmeAIII	GCCGAG	1 cut(s)	147
NspV	TTCGAA	1 cut(s)	239
PciSI	GCTCTTC	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	287
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
PpuMI	RGGWCCY	1 cut(s)	352
PshAI	GACNNNNGTC	1 cut(s)	336
Psp1406I	AACGTT	1 cut(s)	39
Psp5II	RGGWCCY	1 cut(s)	352
PspN4I	GGNNCC	1 cut(s)	353
PspPI	GGNCC	1 cut(s)	352
PspPPI	RGGWCCY	1 cut(s)	352
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SapI	GCTCTTC	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	388
SatI	GCNGC	1 cut(s)	286
Sau3AI	GATC	1 cut(s)	256
Sau96I	GGNCC	1 cut(s)	352
ScaI	AGTACT	1 cut(s)	272
SchI	GAGTC	1 cut(s)	209
SduI	GDGCHC	2 cut(s)	74, 386
SetI	ASST	6 cut(s)	12, 42, 132, 208, 247, 357
SfuI	TTCGAA	1 cut(s)	239
SinI	GGWCC	1 cut(s)	352
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	275
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	1 cut(s)	239
TatI	WGTACW	1 cut(s)	270
Tru1I	TTAA	1 cut(s)	388
Tru9I	TTAA	1 cut(s)	388
TseI	GCWGC	1 cut(s)	285
TspDTI	ATGAA	3 cut(s)	75, 136, 140
TspGWI	ACGGA	2 cut(s)	106, 336
VpaK11BI	GGWCC	1 cut(s)	352
ZrmI	AGTACT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.