Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003666.1

Orthogroup ID

OG0002945

Physical Location & Seq

Genomic Coordinates Forward (+)

47399 .. 47915

Gene Structure 517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003666.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

atgaagatctccttcccagttcttgtctgttttcttcttcttagctcctttctgatggagccagccttcgctgctacctcctcatactgcagcaacaagtgttcgactcggtgcgcagtagcaggagttcaagatcgatgcctcaagtactgtgggatatgctgtgaagagtgcaagtgtgttccttctgggacttatggcaacaagcatgagtgcccttgctacagggacaagaagaacaagaaggggaagcccaagtgcccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

88

Amino Acids

9.72

Weight (kDa)

8.92

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10588 AT1G10588 AT2G39540 AT5G59845
fragaria_vesca	FvH4_2g04680 FvH4_2g33410
malus_domestica	MD05G1093700.v1.1 MD08G1088900.v1.1 MD08G1089100.v1.1 MD08G1089300.v1.1 MD15G1073900.v1.1
prunus_persica	Prupe.1G426700_v2.0.a1 Prupe.1G426700_v2.0.a1 Prupe.8G138400_v2.0.a1 Prupe.8G138400_v2.0.a1 Prupe.8G138600_v2.0.a1
pyrus_communis	pycom05g09280 pycom08g07230 pycom08g07240 pycom08g07260 pycom15g06900
rosa_chinensis	RchiOBHm_Chr6g0254301 RchiOBHm_Chr6g0309121
rosa_multiflora	Rmu_sc0003666.1_g000006 Rmu_sc0005222.1_g000003 Rmu_sc0020102.1_g000002 Rmu_ssc0000412.1_g000016
rosa_roxburghii	Rroxscaffold_7G00159630 Rroxscaffold_7G00210890
rosa_rugosa	Rorug06G0369900
rosa_samantha	Rh6AG482700 Rh6BG491800 Rh6CG061300 Rh6CG496500 Rh6DG483400
rosa_wichuraiana	Rw6G005980 Rw6G006020 Rw6G042030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	115
AfaI	GTAC	1 cut(s)	149
AgsI	TTSAA	1 cut(s)	131
AluBI	AGCT	1 cut(s)	45
AluI	AGCT	1 cut(s)	45
ApeKI	GCWGC	2 cut(s)	71, 90
AspLEI	GCGC	1 cut(s)	116
BaeGI	GKGCMC	2 cut(s)	218, 263
BbvI	GCAGC	2 cut(s)	58, 102
BccI	CCATC	1 cut(s)	49
BfmI	CTRYAG	2 cut(s)	88, 223
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	2 cut(s)	72, 91
BlsI	GCNGC	2 cut(s)	73, 92
BmcAI	AGTACT	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	60
BmrI	ACTGGG	1 cut(s)	11
BmsI	GCATC	1 cut(s)	128
BmuI	ACTGGG	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	128
Bsa29I	ATCGAT	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	17
BseCI	ATCGAT	1 cut(s)	136
BseNI	ACTGG	1 cut(s)	17
BseRI	GAGGAG	1 cut(s)	70
BseSI	GKGCMC	2 cut(s)	218, 263
BseXI	GCAGC	2 cut(s)	58, 102
BshVI	ATCGAT	1 cut(s)	136
BslFI	GGGAC	2 cut(s)	205, 242
BsmFI	GGGAC	2 cut(s)	205, 242
Bsp1286I	GDGCHC	2 cut(s)	218, 263
Bsp143I	GATC	2 cut(s)	6, 133
BspDI	ATCGAT	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	60
BspMAI	CTGCAG	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	17
BssMI	GATC	2 cut(s)	6, 133
Bst4CI	ACNGT	1 cut(s)	152
Bst6I	CTCTTC	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	63
BstDEI	CTNAG	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	2 cut(s)	9, 136
BstMBI	GATC	2 cut(s)	6, 133
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstSFI	CTRYAG	2 cut(s)	88, 223
BstSLI	GKGCMC	2 cut(s)	218, 263
BstV1I	GCAGC	2 cut(s)	58, 102
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
Bsu15I	ATCGAT	1 cut(s)	136
BsuTUI	ATCGAT	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	63
CfoI	GCGC	1 cut(s)	116
ClaI	ATCGAT	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	148
CspCI	CAANNNNNGTGG	2 cut(s)	133, 168
CviAII	CATG	1 cut(s)	209
CviJI	RGCY	4 cut(s)	45, 61, 65, 253
CviKI_1	RGCY	4 cut(s)	45, 61, 65, 253
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	2 cut(s)	8, 135
DpnII	GATC	2 cut(s)	6, 133
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
FaeI	CATG	1 cut(s)	212
FaiI	YATR	4 cut(s)	85, 160, 198, 210
FalI	AAGNNNNNCTT	1 cut(s)	28
FaqI	GGGAC	2 cut(s)	205, 242
FatI	CATG	1 cut(s)	208
Fnu4HI	GCNGC	2 cut(s)	72, 91
Fsp4HI	GCNGC	2 cut(s)	72, 91
FspI	TGCGCA	1 cut(s)	115
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	2 cut(s)	72, 91
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	1 cut(s)	212
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HinfI	GANTC	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	54
Hpy188III	TCNNGA	1 cut(s)	131
HpyAV	CCTTC	4 cut(s)	22, 76, 195, 238
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4V	TGCA	2 cut(s)	90, 174
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	1 cut(s)	41
Hsp92II	CATG	1 cut(s)	212
HspAI	GCGC	1 cut(s)	114
Kzo9I	GATC	2 cut(s)	6, 133
LmnI	GCTCC	2 cut(s)	50, 58
LpnPI	CCDG	5 cut(s)	30, 75, 108, 174, 211
Lsp1109I	GCAGC	2 cut(s)	58, 102
LweI	GCATC	1 cut(s)	128
MalI	GATC	2 cut(s)	8, 135
MboI	GATC	2 cut(s)	6, 133
MboII	GAAGA	5 cut(s)	16, 26, 29, 179, 247
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	2 cut(s)	218, 263
MlyI	GAGTC	1 cut(s)	100
MnlI	CCTC	3 cut(s)	88, 91, 152
MwoI	GCNNNNNNNGC	1 cut(s)	71
NdeII	GATC	2 cut(s)	6, 133
NlaIII	CATG	1 cut(s)	212
NlaIV	GGNNCC	1 cut(s)	60
NsbI	TGCGCA	1 cut(s)	115
PkrI	GCNGC	2 cut(s)	73, 92
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	60
PsrI	GAACNNNNNNTAC	2 cut(s)	111, 143
PstI	CTGCAG	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	6
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SatI	GCNGC	2 cut(s)	72, 91
Sau3AI	GATC	2 cut(s)	6, 133
ScaI	AGTACT	1 cut(s)	149
SchI	GAGTC	1 cut(s)	100
SduI	GDGCHC	2 cut(s)	218, 263
SetI	ASST	2 cut(s)	47, 80
SfaNI	GCATC	1 cut(s)	128
SfcI	CTRYAG	2 cut(s)	88, 223
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
TaaI	ACNGT	1 cut(s)	152
TaqI	TCGA	2 cut(s)	104, 136
TatI	WGTACW	1 cut(s)	147
TseI	GCWGC	2 cut(s)	71, 90
TspDTI	ATGAA	1 cut(s)	17
ZrmI	AGTACT	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.