Rh6CG496500

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002945
Physical Location & Seq
Reverse (-)
66204050 .. 66204760
711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG496500.1

Sequence Viewer

Length: 267 bp
ATGAAGCTCGTCGTCGCAACATTCATGCTTGTTTGCCTTGTTCTCGGCTCATCTGTGTTTGAGACCACAATGGCTGGTTCACCTTTCTGCGACTCAAAGTGTGGGGTGAGATGTTCGAAAGCTGGATACATGGATCGGTGCTTGAAGTACTGTGGAATATGCTGCGAGAAATGCAACTGCGTTCCTTCTGGGACTTACGGAAACAAGGACGAATGCCCTTGCTACAGGGACCTCAAGAACTCCAAGGGAAACCCCAAGTGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

88

Amino Acids

9.56

Weight (kDa)

8.58

Isoelectric Point (pI)

37.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 30 - 88 9.6e-24 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 141
AfaI GTAC 1 cut(s) 149
AgsI TTSAA 1 cut(s) 145
AluBI AGCT 2 cut(s) 7, 122
AluI AGCT 2 cut(s) 7, 122
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 1 cut(s) 141
ApeKI GCWGC 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 229
AsuHPI GGTGA 2 cut(s) 72, 118
AsuII TTCGAA 1 cut(s) 116
AvaII GGWCC 1 cut(s) 229
BaeGI GKGCMC 1 cut(s) 263
BbvI GCAGC 1 cut(s) 149
BciVI GTATCC 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 56
BfmI CTRYAG 1 cut(s) 223
BfuI GTATCC 1 cut(s) 119
BisI GCNGC 1 cut(s) 163
BlsI GCNGC 1 cut(s) 164
BmcAI AGTACT 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 229
BmiI GGNNCC 1 cut(s) 230
Bpu14I TTCGAA 1 cut(s) 116
BpuEI CTTGAG 1 cut(s) 218
BsaI GGTCTC 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 243
BseSI GKGCMC 1 cut(s) 263
BseXI GCAGC 1 cut(s) 149
BslFI GGGAC 2 cut(s) 205, 242
BsmAI GTCTC 1 cut(s) 56
BsmFI GGGAC 2 cut(s) 205, 242
BsmI GAATGC 1 cut(s) 218
Bso31I GGTCTC 1 cut(s) 56
Bsp119I TTCGAA 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 263
Bsp143I GATC 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 230
BspPI GGATC 1 cut(s) 141
BspT104I TTCGAA 1 cut(s) 116
BspTNI GGTCTC 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 1 cut(s) 133
BssT1I CCWWGG 1 cut(s) 243
Bst4CI ACNGT 1 cut(s) 152
BstBI TTCGAA 1 cut(s) 116
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 171
BstSFI CTRYAG 1 cut(s) 223
BstSLI GKGCMC 1 cut(s) 263
BstV1I GCAGC 1 cut(s) 149
BsuI GTATCC 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 229
Csp6I GTAC 1 cut(s) 148
CviAII CATG 2 cut(s) 25, 130
CviJI RGCY 4 cut(s) 7, 48, 74, 122
CviKI_1 RGCY 4 cut(s) 7, 48, 74, 122
CviQI GTAC 1 cut(s) 148
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 243
Eco31I GGTCTC 1 cut(s) 56
Eco47I GGWCC 1 cut(s) 229
EcoO109I RGGNCCY 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 2 cut(s) 28, 133
FaiI YATR 3 cut(s) 26, 131, 160
FaqI GGGAC 2 cut(s) 205, 242
FatI CATG 2 cut(s) 24, 129
Fnu4HI GCNGC 1 cut(s) 163
Fsp4HI GCNGC 1 cut(s) 163
GluI GCNGC 1 cut(s) 163
Hin1II CATG 2 cut(s) 28, 133
HinfI GANTC 1 cut(s) 92
HphI GGTGA 2 cut(s) 72, 118
Hpy166II GTNNAC 1 cut(s) 80
Hpy188III TCNNGA 1 cut(s) 235
Hpy8I GTNNAC 1 cut(s) 80
Hpy99I CGWCG 2 cut(s) 14, 17
HpyAV CCTTC 1 cut(s) 195
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4V TGCA 1 cut(s) 174
HpyF10VI GCNNNNNNNGC 1 cut(s) 171
Hsp92II CATG 2 cut(s) 28, 133
Kzo9I GATC 1 cut(s) 133
LpnPI CCDG 4 cut(s) 60, 108, 174, 211
Lsp1109I GCAGC 1 cut(s) 149
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MhlI GDGCHC 1 cut(s) 263
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 1 cut(s) 242
MseI TTAA 1 cut(s) 265
Mva1269I GAATGC 1 cut(s) 218
MwoI GCNNNNNNNGC 1 cut(s) 171
NdeII GATC 1 cut(s) 133
NlaIII CATG 2 cut(s) 28, 133
NlaIV GGNNCC 1 cut(s) 230
NmeAIII GCCGAG 1 cut(s) 24
NspV TTCGAA 1 cut(s) 116
PctI GAATGC 1 cut(s) 218
PkrI GCNGC 1 cut(s) 164
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
PpuMI RGGWCCY 1 cut(s) 229
Psp5II RGGWCCY 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 230
PspPI GGNCC 1 cut(s) 229
PspPPI RGGWCCY 1 cut(s) 229
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SaqAI TTAA 1 cut(s) 265
SatI GCNGC 1 cut(s) 163
Sau3AI GATC 1 cut(s) 133
Sau96I GGNCC 1 cut(s) 229
ScaI AGTACT 1 cut(s) 149
SchI GAGTC 1 cut(s) 86
SduI GDGCHC 1 cut(s) 263
SetI ASST 4 cut(s) 9, 85, 124, 234
SfcI CTRYAG 1 cut(s) 223
SfuI TTCGAA 1 cut(s) 116
SinI GGWCC 1 cut(s) 229
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 1 cut(s) 152
TaqI TCGA 1 cut(s) 116
TatI WGTACW 1 cut(s) 147
Tru1I TTAA 1 cut(s) 265
Tru9I TTAA 1 cut(s) 265
TseI GCWGC 1 cut(s) 162
TspDTI ATGAA 2 cut(s) 13, 17
TspGWI ACGGA 1 cut(s) 213
VpaK11BI GGWCC 1 cut(s) 229
ZrmI AGTACT 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.