Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002945

Physical Location & Seq

Genomic Coordinates Reverse (-)

12403578 .. 12404482

Gene Structure 905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g09280.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGATAATCGAACTTAAACCGTCAACCAAAGAAATACCACTACGTAATACTAGTTGTTGCCGACTCACAAGTTCTCTCTCACTCGCTATTAAATACCAGCTTGAGCTCTCACAATCCTCCACACTGCCTCAAGTACACTTCTCAACTACGACTTGTCCTTTGAGTTCACCAGGCAAGATGAAGCTCTACTTTCCACTCCTCTGTTTCCTTCTTCTTACCTCTTCTTTCATGGATCCAGCCATGGCCCTCGCTACTTCACCATATTGCAGCGACAAGTGCTCGACGAGGTGTGCAGTAGCAGGAGTTCGGGATCGATGCATAAAGTATTGTGGGATTTGCTGTGAAGCGTGCAAGTGTGTGCCTTCTGGGACTTATGGGAACAAGCACGAGTGCCCTTGCTACAGGGACAAGAAGAACGACAAGGGCAAGCCCAAGTGCCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

148

Amino Acids

16.2

Weight (kDa)

8.94

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10588 AT1G10588 AT2G39540 AT5G59845
fragaria_vesca	FvH4_2g04680 FvH4_2g33410
malus_domestica	MD05G1093700.v1.1 MD08G1088900.v1.1 MD08G1089100.v1.1 MD08G1089300.v1.1 MD15G1073900.v1.1
prunus_persica	Prupe.1G426700_v2.0.a1 Prupe.1G426700_v2.0.a1 Prupe.8G138400_v2.0.a1 Prupe.8G138400_v2.0.a1 Prupe.8G138600_v2.0.a1
pyrus_communis	pycom05g09280 pycom08g07230 pycom08g07240 pycom08g07260 pycom15g06900
rosa_chinensis	RchiOBHm_Chr6g0254301 RchiOBHm_Chr6g0309121
rosa_multiflora	Rmu_sc0003666.1_g000006 Rmu_sc0005222.1_g000003 Rmu_sc0020102.1_g000002 Rmu_ssc0000412.1_g000016
rosa_roxburghii	Rroxscaffold_7G00159630 Rroxscaffold_7G00210890
rosa_rugosa	Rorug06G0369900
rosa_samantha	Rh6AG482700 Rh6BG491800 Rh6CG061300 Rh6CG496500 Rh6DG483400
rosa_wichuraiana	Rw6G005980 Rw6G006020 Rw6G042030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	227, 240, 318
AfaI	GTAC	1 cut(s)	135
AhlI	ACTAGT	1 cut(s)	50
AjnI	CCWGG	1 cut(s)	169
AluBI	AGCT	3 cut(s)	100, 106, 184
AluI	AGCT	3 cut(s)	100, 106, 184
Alw21I	GWGCWC	2 cut(s)	108, 281
AlwI	GGATC	3 cut(s)	227, 240, 318
AoxI	GGCC	1 cut(s)	243
ApeKI	GCWGC	1 cut(s)	267
ArsI	GACNNNNNNTTYG	2 cut(s)	142, 174
AspS9I	GGNCC	1 cut(s)	244
AsuHPI	GGTGA	2 cut(s)	159, 249
BaeGI	GKGCMC	2 cut(s)	395, 440
BamHI	GGATCC	1 cut(s)	232
BanII	GRGCYC	1 cut(s)	108
BauI	CACGAG	1 cut(s)	386
Bbv12I	GWGCWC	2 cut(s)	108, 281
BbvI	GCAGC	1 cut(s)	279
BciT130I	CCWGG	1 cut(s)	171
BcuI	ACTAGT	1 cut(s)	50
BfaI	CTAG	1 cut(s)	51
BfmI	CTRYAG	1 cut(s)	400
BisI	GCNGC	1 cut(s)	268
BlsI	GCNGC	1 cut(s)	269
Bme1390I	CCNGG	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	1 cut(s)	171
BmsI	GCATC	1 cut(s)	305
BpuEI	CTTGAG	2 cut(s)	114, 122
Bsa29I	ATCGAT	1 cut(s)	313
BsaAI	YACGTR	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	171
BseCI	ATCGAT	1 cut(s)	313
BseDI	CCNNGG	1 cut(s)	240
BseRI	GAGGAG	1 cut(s)	188
BseSI	GKGCMC	2 cut(s)	395, 440
BseXI	GCAGC	1 cut(s)	279
BsgI	GTGCAG	1 cut(s)	312
BshFI	GGCC	1 cut(s)	245
BshVI	ATCGAT	1 cut(s)	313
BsiHKAI	GWGCWC	2 cut(s)	108, 281
BslFI	GGGAC	2 cut(s)	382, 419
BsmFI	GGGAC	2 cut(s)	382, 419
BsnI	GGCC	1 cut(s)	245
Bsp1286I	GDGCHC	4 cut(s)	108, 281, 395, 440
Bsp143I	GATC	2 cut(s)	232, 310
Bsp19I	CCATGG	1 cut(s)	240
BspANI	GGCC	1 cut(s)	245
BspDI	ATCGAT	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	234
BspPI	GGATC	3 cut(s)	227, 240, 318
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	2 cut(s)	232, 310
BssSI	CACGAG	1 cut(s)	386
BssT1I	CCWWGG	1 cut(s)	240
Bst2BI	CACGAG	1 cut(s)	386
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	1 cut(s)	21
Bst6I	CTCTTC	1 cut(s)	226
BstBAI	YACGTR	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	349, 428
BstDSI	CCRYGG	1 cut(s)	240
BstKTI	GATC	2 cut(s)	235, 313
BstMBI	GATC	2 cut(s)	232, 310
BstMWI	GCNNNNNNNGC	1 cut(s)	276
BstNI	CCWGG	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	169
BstSFI	CTRYAG	1 cut(s)	400
BstSLI	GKGCMC	2 cut(s)	395, 440
BstSNI	TACGTA	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
Bsu15I	ATCGAT	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	245
BsuTUI	ATCGAT	1 cut(s)	313
BtgI	CCRYGG	1 cut(s)	240
BtsI	GCAGTG	1 cut(s)	122
BtsIMutI	CAGTG	1 cut(s)	122
Cac8I	GCNNGC	2 cut(s)	349, 428
Cfr13I	GGNCC	1 cut(s)	244
ClaI	ATCGAT	1 cut(s)	313
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	2 cut(s)	229, 241
CviJI	RGCY	6 cut(s)	100, 106, 184, 239, 245, 430
CviKI_1	RGCY	6 cut(s)	100, 106, 184, 239, 245, 430
CviQI	GTAC	1 cut(s)	134
DpnI	GATC	2 cut(s)	234, 312
DpnII	GATC	2 cut(s)	232, 310
Eam1104I	CTCTTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	226
Ecl136II	GAGCTC	1 cut(s)	106
Eco105I	TACGTA	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	240
Eco24I	GRGCYC	1 cut(s)	108
Eco53kI	GAGCTC	1 cut(s)	106
EcoICRI	GAGCTC	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	240
EcoT22I	ATGCAT	1 cut(s)	320
EcoT38I	GRGCYC	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	2 cut(s)	232, 244
FaiI	YATR	5 cut(s)	230, 242, 262, 320, 375
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FaqI	GGGAC	2 cut(s)	382, 419
FatI	CATG	2 cut(s)	228, 240
Fnu4HI	GCNGC	1 cut(s)	268
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	268
FspBI	CTAG	1 cut(s)	51
GluI	GCNGC	1 cut(s)	268
HaeIII	GGCC	1 cut(s)	245
Hin1II	CATG	2 cut(s)	232, 244
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HinfI	GANTC	1 cut(s)	63
HphI	GGTGA	2 cut(s)	159, 249
Hpy166II	GTNNAC	3 cut(s)	24, 136, 167
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	3 cut(s)	24, 136, 167
Hpy99I	CGWCG	1 cut(s)	286
HpyAV	CCTTC	2 cut(s)	218, 372
HpyCH4III	ACNGT	1 cut(s)	21
HpyCH4IV	ACGT	1 cut(s)	43
HpyCH4V	TGCA	4 cut(s)	267, 293, 318, 351
HpyF10VI	GCNNNNNNNGC	1 cut(s)	276
HpySE526I	ACGT	1 cut(s)	43
Hsp92II	CATG	2 cut(s)	232, 244
Kzo9I	GATC	2 cut(s)	232, 310
LpnPI	CCDG	7 cut(s)	110, 156, 183, 249, 285, 351, 388
Lsp1109I	GCAGC	1 cut(s)	279
LweI	GCATC	1 cut(s)	305
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	1 cut(s)	43
MalI	GATC	2 cut(s)	234, 312
MboI	GATC	2 cut(s)	232, 310
MboII	GAAGA	3 cut(s)	203, 213, 424
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	4 cut(s)	108, 281, 395, 440
MlyI	GAGTC	1 cut(s)	57
MnlI	CCTC	6 cut(s)	127, 138, 209, 229, 257, 279
Mph1103I	ATGCAT	1 cut(s)	320
MseI	TTAA	2 cut(s)	15, 90
MspR9I	CCNGG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	276
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	2 cut(s)	232, 310
NlaIII	CATG	2 cut(s)	232, 244
NlaIV	GGNNCC	1 cut(s)	234
NsiI	ATGCAT	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	269
PleI	GAGTC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	57
Ppu21I	YACGTR	1 cut(s)	44
Psp124BI	GAGCTC	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	1 cut(s)	244
PsrI	GAACNNNNNNTAC	2 cut(s)	288, 320
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
SacI	GAGCTC	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	15, 90
SatI	GCNGC	1 cut(s)	268
Sau3AI	GATC	2 cut(s)	232, 310
Sau96I	GGNCC	1 cut(s)	244
SchI	GAGTC	1 cut(s)	57
ScrFI	CCNGG	1 cut(s)	171
SduI	GDGCHC	4 cut(s)	108, 281, 395, 440
SetI	ASST	6 cut(s)	46, 102, 108, 186, 221, 290
SfaNI	GCATC	1 cut(s)	305
SfcI	CTRYAG	1 cut(s)	400
SmlI	CTYRAG	2 cut(s)	101, 129
SmoI	CTYRAG	2 cut(s)	101, 129
SnaBI	TACGTA	1 cut(s)	44
SpeI	ACTAGT	1 cut(s)	50
SspMI	CTAG	1 cut(s)	51
SstI	GAGCTC	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	169
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	21
TaiI	ACGT	1 cut(s)	46
TaqI	TCGA	3 cut(s)	9, 281, 313
TatI	WGTACW	1 cut(s)	133
Tru1I	TTAA	2 cut(s)	15, 90
Tru9I	TTAA	2 cut(s)	15, 90
TscAI	CASTG	1 cut(s)	129
TseI	GCWGC	1 cut(s)	267
TspDTI	ATGAA	2 cut(s)	194, 217
TspRI	CASTG	1 cut(s)	129
XspI	CTAG	1 cut(s)	51
Zsp2I	ATGCAT	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.