AT1G10820

Protein of unknown function (DUF3755)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004772
Physical Location & Seq
Reverse (-)
3600910 .. 3605076
4167 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G10820.2

Sequence Viewer

Length: 699 bp
ATGATTCCAATGGATAATCACTGCTTGCCAACTGTGGATGCTTCGGGTTCAGTGGCTGCAGGAGTCAAACAAGAAGCTGCTTTGGTTATGGATTGGTCCGTTGAGGAACAGTATGTTTTGGAGAACGGCCTTGCAAAATTAAAAGATGAACCCAAAATTTCAAAGTATGTAAAGATCGCTGCAACTCTACCGGATAAAACTGTAAGGGATGTAGCATTGAGGTGTAGATGGATGACGAGAAAACGGAGGAAACGAGAGGATAATAATGCCGCTAAGAACATTAGCACTAGGAAGGTGGTGGATACATCCCCAGAACTGAACATGCTATCCAATGTGCCACAACAAAATGCTTTATATGTCCTGAACAATATGTGCCACAGTACACGCACGCCTTTCGAAGGTTTAAGTGACGCAGTAATGGATCTTCTACAGCAAAATGCTCAAGCTTTTAGTCAGATTTCTTACAACCTCTCTGCGTGCAAGCTGCAGGATAACATCAGTCTCTTTCATCAGGCAAGAAACAATATCAGCGCCATTTTGACTGACATGAAGGAGATGCCTGGAATCATGAGTCGGATGCCGGCTCTACCGGTTTCAATTAATGATGATCTTGCAAGCAATCTATTGTCGAGTACAACACAGCCAATATCGTACAACATTCCACCAAGCATCCACCTGAAGCAAGAGCCAAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3755

Protein Analysis

232

Amino Acids

25.87

Weight (kDa)

8.31

Isoelectric Point (pI)

60.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3755 PF12579 185 - 218 9e-19 Protein of unknown function (DUF3755)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 270
AclWI GGATC 1 cut(s) 429
AcsI RAATTY 1 cut(s) 156
AcuI CTGAAG 1 cut(s) 698
AfaI GTAC 3 cut(s) 382, 634, 653
AfiI CCNNNNNNNGG 1 cut(s) 398
AgeI ACCGGT 1 cut(s) 589
AgsI TTSAA 2 cut(s) 162, 597
AjnI CCWGG 1 cut(s) 559
AloI GAACNNNNNNTCC 2 cut(s) 311, 343
AluBI AGCT 3 cut(s) 77, 446, 484
AluI AGCT 3 cut(s) 77, 446, 484
Alw26I GTCTC 1 cut(s) 506
AlwI GGATC 1 cut(s) 429
AlwNI CAGNNNCTG 1 cut(s) 56
AoxI GGCC 1 cut(s) 127
ApeKI GCWGC 4 cut(s) 56, 77, 179, 484
ApoI RAATTY 1 cut(s) 156
AseI ATTAAT 1 cut(s) 600
AsiGI ACCGGT 1 cut(s) 589
AspLEI GCGC 1 cut(s) 533
AspS9I GGNCC 1 cut(s) 96
AsuII TTCGAA 1 cut(s) 396
AvaII GGWCC 1 cut(s) 96
BarI GAAGNNNNNNTAC 2 cut(s) 408, 440
BbvI GCAGC 4 cut(s) 43, 64, 166, 471
BccI CCATC 1 cut(s) 222
BceAI ACGGC 1 cut(s) 142
BcgI CGANNNNNNTGC 2 cut(s) 376, 410
BciT130I CCWGG 1 cut(s) 561
BciVI GTATCC 1 cut(s) 295
BcoDI GTCTC 1 cut(s) 506
BfaI CTAG 1 cut(s) 288
BfmI CTRYAG 3 cut(s) 57, 428, 485
BfoI RGCGCY 1 cut(s) 534
BfuI GTATCC 1 cut(s) 295
BisI GCNGC 5 cut(s) 57, 78, 180, 270, 485
BlsI GCNGC 5 cut(s) 58, 79, 181, 271, 486
Bme1390I CCNGG 1 cut(s) 561
Bme18I GGWCC 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 96
BmrFI CCNGG 1 cut(s) 561
BmsI GCATC 4 cut(s) 28, 546, 567, 678
Bpu14I TTCGAA 1 cut(s) 396
BpuEI CTTGAG 1 cut(s) 426
BsaWI WCCGGW 2 cut(s) 190, 589
Bsc4I CCNNNNNNNGG 1 cut(s) 398
Bse118I RCCGGY 2 cut(s) 580, 589
BseBI CCWGG 1 cut(s) 561
BseGI GGATG 6 cut(s) 43, 214, 237, 305, 582, 669
BseLI CCNNNNNNNGG 1 cut(s) 398
BseXI GCAGC 4 cut(s) 43, 64, 166, 471
BshFI GGCC 1 cut(s) 129
BshTI ACCGGT 1 cut(s) 589
BsiSI CCGG 3 cut(s) 191, 581, 590
BslI CCNNNNNNNGG 1 cut(s) 398
BsmAI GTCTC 1 cut(s) 506
BsnI GGCC 1 cut(s) 129
Bsp119I TTCGAA 1 cut(s) 396
Bsp143I GATC 3 cut(s) 174, 421, 607
BspACI CCGC 1 cut(s) 270
BspANI GGCC 1 cut(s) 129
BspHI TCATGA 1 cut(s) 567
BspMAI CTGCAG 2 cut(s) 61, 489
BspPI GGATC 1 cut(s) 429
BspT104I TTCGAA 1 cut(s) 396
BsrFI RCCGGY 2 cut(s) 580, 589
BssAI RCCGGY 2 cut(s) 580, 589
BssMI GATC 3 cut(s) 174, 421, 607
Bst2UI CCWGG 1 cut(s) 561
Bst4CI ACNGT 4 cut(s) 34, 111, 202, 380
BstBI TTCGAA 1 cut(s) 396
BstC8I GCNNGC 6 cut(s) 26, 389, 478, 482, 582, 616
BstDEI CTNAG 1 cut(s) 273
BstENI CCTNNNNNAGG 1 cut(s) 396
BstF5I GGATG 6 cut(s) 43, 214, 237, 305, 582, 669
BstH2I RGCGCY 1 cut(s) 534
BstHHI GCGC 1 cut(s) 533
BstKTI GATC 3 cut(s) 177, 424, 610
BstMAI GTCTC 1 cut(s) 506
BstMBI GATC 3 cut(s) 174, 421, 607
BstNI CCWGG 1 cut(s) 561
BstNSI RCATGY 1 cut(s) 325
BstSCI CCNGG 1 cut(s) 559
BstSFI CTRYAG 3 cut(s) 57, 428, 485
BstV1I GCAGC 4 cut(s) 43, 64, 166, 471
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
BsuI GTATCC 1 cut(s) 295
BsuRI GGCC 1 cut(s) 129
BtsCI GGATG 6 cut(s) 43, 214, 237, 305, 582, 669
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 2 cut(s) 19, 57
Cac8I GCNNGC 6 cut(s) 26, 389, 478, 482, 582, 616
CaiI CAGNNNCTG 1 cut(s) 56
CciI TCATGA 1 cut(s) 567
CfoI GCGC 1 cut(s) 533
Cfr10I RCCGGY 2 cut(s) 580, 589
Cfr13I GGNCC 1 cut(s) 96
CseI GACGC 1 cut(s) 419
Csp6I GTAC 3 cut(s) 381, 633, 652
CspAI ACCGGT 1 cut(s) 589
CviAII CATG 3 cut(s) 322, 547, 568
CviJI RGCY 8 cut(s) 56, 77, 129, 446, 484, 584, 643, 688
CviKI_1 RGCY 8 cut(s) 56, 77, 129, 446, 484, 584, 643, 688
CviQI GTAC 3 cut(s) 381, 633, 652
DdeI CTNAG 1 cut(s) 273
DpnI GATC 3 cut(s) 176, 423, 609
DpnII GATC 3 cut(s) 174, 421, 607
Eco47I GGWCC 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 698
EcoNI CCTNNNNNAGG 1 cut(s) 396
EcoRII CCWGG 1 cut(s) 559
FaeI CATG 3 cut(s) 325, 550, 571
FaiI YATR 9 cut(s) 89, 114, 168, 323, 355, 357, 371, 548, 569
FatI CATG 3 cut(s) 321, 546, 567
Fnu4HI GCNGC 5 cut(s) 57, 78, 180, 270, 485
FokI GGATG 6 cut(s) 50, 221, 244, 292, 589, 656
Fsp4HI GCNGC 5 cut(s) 57, 78, 180, 270, 485
FspBI CTAG 1 cut(s) 288
GlaI GCGC 1 cut(s) 532
GluI GCNGC 5 cut(s) 57, 78, 180, 270, 485
HaeII RGCGCY 1 cut(s) 534
HaeIII GGCC 1 cut(s) 129
HapII CCGG 3 cut(s) 191, 581, 590
HgaI GACGC 1 cut(s) 419
HhaI GCGC 1 cut(s) 533
Hin1II CATG 3 cut(s) 325, 550, 571
Hin6I GCGC 1 cut(s) 531
HinP1I GCGC 1 cut(s) 531
HindIII AAGCTT 1 cut(s) 444
HinfI GANTC 4 cut(s) 4, 63, 564, 571
HpaII CCGG 3 cut(s) 191, 581, 590
Hpy166II GTNNAC 1 cut(s) 383
Hpy188I TCNGA 2 cut(s) 456, 576
Hpy188III TCNNGA 2 cut(s) 361, 568
Hpy8I GTNNAC 1 cut(s) 383
HpyAV CCTTC 3 cut(s) 286, 392, 544
HpyCH4III ACNGT 4 cut(s) 34, 111, 202, 380
HpyCH4V TGCA 6 cut(s) 59, 134, 182, 480, 487, 614
HpyF3I CTNAG 1 cut(s) 273
Hsp92II CATG 3 cut(s) 325, 550, 571
HspAI GCGC 1 cut(s) 531
KroI GCCGGC 1 cut(s) 580
KroNI GCCGGC 1 cut(s) 582
Kzo9I GATC 3 cut(s) 174, 421, 607
Lsp1109I GCAGC 4 cut(s) 43, 64, 166, 471
LweI GCATC 4 cut(s) 28, 546, 567, 678
MaeI CTAG 1 cut(s) 288
MaeIII GTNAC 1 cut(s) 407
MalI GATC 3 cut(s) 176, 423, 609
MboI GATC 3 cut(s) 174, 421, 607
MboII GAAGA 1 cut(s) 416
MflI RGATCY 1 cut(s) 421
MluCI AATT 3 cut(s) 137, 156, 597
MlyI GAGTC 2 cut(s) 72, 580
MmeI TCCRAC 1 cut(s) 554
MnlI CCTC 5 cut(s) 97, 213, 240, 250, 479
MroNI GCCGGC 1 cut(s) 580
MseI TTAA 3 cut(s) 140, 404, 600
MslI CAYNNNNRTG 1 cut(s) 220
MspI CCGG 3 cut(s) 191, 581, 590
MspR9I CCNGG 1 cut(s) 561
MvaI CCWGG 1 cut(s) 561
NaeI GCCGGC 1 cut(s) 582
NdeII GATC 3 cut(s) 174, 421, 607
NgoMIV GCCGGC 1 cut(s) 580
NlaIII CATG 3 cut(s) 325, 550, 571
NmuCI GTSAC 1 cut(s) 407
NspI RCATGY 1 cut(s) 325
NspV TTCGAA 1 cut(s) 396
PagI TCATGA 1 cut(s) 567
PcsI WCGNNNNNNNCGW 1 cut(s) 250
PdiI GCCGGC 1 cut(s) 582
PfeI GAWTC 2 cut(s) 4, 564
PinAI ACCGGT 1 cut(s) 589
PkrI GCNGC 5 cut(s) 58, 79, 181, 271, 486
PleI GAGTC 2 cut(s) 71, 579
PpsI GAGTC 2 cut(s) 71, 579
PshBI ATTAAT 1 cut(s) 600
Psp6I CCWGG 1 cut(s) 559
PspGI CCWGG 1 cut(s) 559
PspPI GGNCC 1 cut(s) 96
PstI CTGCAG 2 cut(s) 61, 489
PstNI CAGNNNCTG 1 cut(s) 56
PsuI RGATCY 1 cut(s) 421
RsaI GTAC 3 cut(s) 382, 634, 653
RsaNI GTAC 3 cut(s) 381, 633, 652
RseI CAYNNNNRTG 1 cut(s) 220
SaqAI TTAA 3 cut(s) 140, 404, 600
SatI GCNGC 5 cut(s) 57, 78, 180, 270, 485
Sau3AI GATC 3 cut(s) 174, 421, 607
Sau96I GGNCC 1 cut(s) 96
SchI GAGTC 2 cut(s) 72, 580
ScrFI CCNGG 1 cut(s) 561
SetI ASST 8 cut(s) 79, 224, 297, 403, 448, 471, 486, 678
SfaNI GCATC 4 cut(s) 28, 546, 567, 678
SfcI CTRYAG 3 cut(s) 57, 428, 485
SfuI TTCGAA 1 cut(s) 396
SinI GGWCC 1 cut(s) 96
SmiMI CAYNNNNRTG 1 cut(s) 220
SmlI CTYRAG 1 cut(s) 441
SmoI CTYRAG 1 cut(s) 441
Sse9I AATT 3 cut(s) 137, 156, 597
SsiI CCGC 1 cut(s) 270
SspMI CTAG 1 cut(s) 288
StyD4I CCNGG 1 cut(s) 559
TaaI ACNGT 4 cut(s) 34, 111, 202, 380
TaqI TCGA 2 cut(s) 396, 629
TasI AATT 3 cut(s) 137, 156, 597
TatI WGTACW 2 cut(s) 380, 632
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 2 cut(s) 4, 564
Tru1I TTAA 3 cut(s) 140, 404, 600
Tru9I TTAA 3 cut(s) 140, 404, 600
TscAI CASTG 2 cut(s) 26, 57
TseFI GTSAC 1 cut(s) 407
TseI GCWGC 4 cut(s) 56, 77, 179, 484
Tsp45I GTSAC 1 cut(s) 407
TspDTI ATGAA 3 cut(s) 162, 497, 563
TspGWI ACGGA 2 cut(s) 88, 259
TspRI CASTG 2 cut(s) 26, 57
VpaK11BI GGWCC 1 cut(s) 96
VspI ATTAAT 1 cut(s) 600
XagI CCTNNNNNAGG 1 cut(s) 396
XapI RAATTY 1 cut(s) 156
XceI RCATGY 1 cut(s) 325
XspI CTAG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.