AT1G68160

Protein of unknown function (DUF3755)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004772
Physical Location & Seq
Reverse (-)
25545758 .. 25548894
3137 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G68160.1

Sequence Viewer

Length: 822 bp
ATGTGGATGGCTACTCAATCAAATTCTGGGTTCGATTCTTTGAGTTCTATGATGAGTCGTCACGCTATTAATTTCCAATCTAACACTTCTTCGGAGATGACTCCAATGAGTCCGTACTTGGGGATGAATATGAATATGATCAATGTTGGTTCTCCTGGTTTTCTTCAAACCGGGAATTCTTCGAATGGTTCCGATTCGGGTTCTGGTCTAAAGCTTGATACTTCCATGGTTAGTGAATGGTCAAATGAAGAACAATACATATTGGATGCTGGTCTTGAAAAATATAAGGATATGCCAAGTATTGATATGTATATTCAAATTGGAAACACTTTACCTGATAAAAGTATTCGAGATATTGCTTTGCGGTGTAGGTGGCTGAGGAGAAAGAGAAGAAAATCAGAAGAATTAAACTGTGGAAGAAGAGCAAGTTCTAGCAAGGGCAAGCAGGTGGAATCGTCGTCTAAGTCAAGCATTCCCTCTGTTTTGCCTCATAACATGGCTTCATATCCTTTCTCAGGGCCATCTACAAGCACCAGTAAACAAATTACGTCTGAAGATTTAAGTAGCTATGCAACAAATCTTATAGAACAGAATGTACGAGCTTTTAGTCAAATTAGAGCTAATCTCTCCTCATATAAGGCAGGGGATAACCTAGATCTCTTTCGTCAGGCAAGGAACAACCTTATCACCATCCAAAATGAGATAAATAATATGCCTGGATTGATGAACAAGATGCCACCATTGCCAGTCACAATCAATGATGATCTCTCGGTGATGATGCCATTCAATACGATGCAAAGTGGCGGCTTCCATAGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3755

Protein Analysis

273

Amino Acids

30.35

Weight (kDa)

9.03

Isoelectric Point (pI)

70.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3755 PF12579 211 - 243 8.1e-14 Protein of unknown function (DUF3755)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 436
Acc36I ACCTGC 1 cut(s) 436
AciI CCGC 2 cut(s) 364, 804
AcsI RAATTY 2 cut(s) 22, 175
AcuI CTGAAG 1 cut(s) 573
AfaI GTAC 2 cut(s) 116, 597
AfiI CCNNNNNNNGG 2 cut(s) 119, 515
AgsI TTSAA 4 cut(s) 167, 278, 317, 787
AjnI CCWGG 2 cut(s) 154, 715
AluBI AGCT 4 cut(s) 214, 567, 602, 620
AluI AGCT 4 cut(s) 214, 567, 602, 620
AoxI GGCC 1 cut(s) 518
ApoI RAATTY 2 cut(s) 22, 175
AseI ATTAAT 1 cut(s) 69
AspS9I GGNCC 1 cut(s) 518
AsuC2I CCSGG 1 cut(s) 172
AsuHPI GGTGA 2 cut(s) 679, 784
AsuII TTCGAA 1 cut(s) 182
BbvCI CCTCAGC 1 cut(s) 377
BccI CCATC 2 cut(s) 529, 698
BciT130I CCWGG 2 cut(s) 156, 717
BclI TGATCA 1 cut(s) 138
BcnI CCSGG 1 cut(s) 172
BfaI CTAG 2 cut(s) 432, 653
BfuAI ACCTGC 1 cut(s) 436
BglII AGATCT 1 cut(s) 655
BisI GCNGC 1 cut(s) 805
BlsI GCNGC 1 cut(s) 806
Bme1390I CCNGG 3 cut(s) 156, 172, 717
BmgT120I GGNCC 1 cut(s) 518
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 3 cut(s) 156, 172, 717
BmsI GCATC 4 cut(s) 256, 723, 768, 783
BplI GAGNNNNNCTC 2 cut(s) 609, 641
Bpu10I CCTNAGC 1 cut(s) 377
Bpu14I TTCGAA 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 225
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 515
Bse1I ACTGG 2 cut(s) 534, 746
Bse3DI GCAATG 1 cut(s) 740
BseBI CCWGG 2 cut(s) 156, 717
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 4 cut(s) 12, 129, 271, 690
BseLI CCNNNNNNNGG 2 cut(s) 119, 515
BseMI GCAATG 1 cut(s) 740
BseMII CTCAG 2 cut(s) 368, 528
BseNI ACTGG 2 cut(s) 534, 746
BseRI GAGGAG 2 cut(s) 394, 619
BshFI GGCC 1 cut(s) 520
BsiSI CCGG 1 cut(s) 171
BslI CCNNNNNNNGG 2 cut(s) 119, 515
BsmI GAATGC 1 cut(s) 471
BsnI GGCC 1 cut(s) 520
Bsp119I TTCGAA 1 cut(s) 182
Bsp143I GATC 3 cut(s) 138, 655, 763
Bsp19I CCATGG 1 cut(s) 225
BspACI CCGC 2 cut(s) 364, 804
BspANI GGCC 1 cut(s) 520
BspCNI CTCAG 2 cut(s) 369, 527
BspLI GGNNCC 1 cut(s) 190
BspMI ACCTGC 1 cut(s) 436
BspQI GCTCTTC 1 cut(s) 415
BspT104I TTCGAA 1 cut(s) 182
BsrDI GCAATG 1 cut(s) 740
BsrI ACTGG 2 cut(s) 534, 746
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 3 cut(s) 138, 655, 763
BssT1I CCWWGG 1 cut(s) 225
Bst2UI CCWGG 2 cut(s) 156, 717
Bst4CI ACNGT 1 cut(s) 413
Bst6I CTCTTC 1 cut(s) 415
BstBI TTCGAA 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 443
BstDEI CTNAG 3 cut(s) 377, 462, 514
BstDSI CCRYGG 1 cut(s) 225
BstENI CCTNNNNNAGG 1 cut(s) 513
BstF5I GGATG 4 cut(s) 12, 129, 271, 690
BstKTI GATC 3 cut(s) 141, 658, 766
BstMBI GATC 3 cut(s) 138, 655, 763
BstMWI GCNNNNNNNGC 1 cut(s) 742
BstNI CCWGG 2 cut(s) 156, 717
BstSCI CCNGG 3 cut(s) 154, 170, 715
BstX2I RGATCY 1 cut(s) 655
BstYI RGATCY 1 cut(s) 655
BsuRI GGCC 1 cut(s) 520
BtgI CCRYGG 1 cut(s) 225
BtsCI GGATG 4 cut(s) 12, 129, 271, 690
BveI ACCTGC 1 cut(s) 436
Cac8I GCNNGC 1 cut(s) 443
Cfr13I GGNCC 1 cut(s) 518
Csp6I GTAC 2 cut(s) 115, 596
CviAII CATG 2 cut(s) 226, 496
CviJI RGCY 9 cut(s) 11, 214, 376, 500, 520, 567, 602, 620, 807
CviKI_1 RGCY 9 cut(s) 11, 214, 376, 500, 520, 567, 602, 620, 807
CviQI GTAC 2 cut(s) 115, 596
DdeI CTNAG 3 cut(s) 377, 462, 514
DpnI GATC 3 cut(s) 140, 657, 765
DpnII GATC 3 cut(s) 138, 655, 763
Eam1104I CTCTTC 1 cut(s) 415
EarI CTCTTC 1 cut(s) 415
Eco130I CCWWGG 1 cut(s) 225
Eco57I CTGAAG 1 cut(s) 573
EcoNI CCTNNNNNAGG 1 cut(s) 513
EcoRI GAATTC 1 cut(s) 175
EcoRII CCWGG 2 cut(s) 154, 715
EcoT14I CCWWGG 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 2 cut(s) 229, 499
FatI CATG 2 cut(s) 225, 495
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 805
FokI GGATG 4 cut(s) 19, 136, 278, 677
Fsp4HI GCNGC 1 cut(s) 805
FspBI CTAG 2 cut(s) 432, 653
GluI GCNGC 1 cut(s) 805
HaeIII GGCC 1 cut(s) 520
HapII CCGG 1 cut(s) 171
Hin1II CATG 2 cut(s) 229, 499
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 6 cut(s) 35, 55, 100, 109, 194, 452
HpaII CCGG 1 cut(s) 171
HphI GGTGA 2 cut(s) 679, 784
Hpy166II GTNNAC 1 cut(s) 539
Hpy188I TCNGA 4 cut(s) 94, 193, 400, 553
Hpy188III TCNNGA 2 cut(s) 275, 350
Hpy8I GTNNAC 1 cut(s) 539
Hpy99I CGWCG 1 cut(s) 460
HpyCH4III ACNGT 1 cut(s) 413
HpyCH4IV ACGT 1 cut(s) 548
HpyCH4V TGCA 2 cut(s) 572, 796
HpyF10VI GCNNNNNNNGC 1 cut(s) 742
HpyF3I CTNAG 3 cut(s) 377, 462, 514
HpySE526I ACGT 1 cut(s) 548
Hsp92II CATG 2 cut(s) 229, 499
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 3 cut(s) 138, 655, 763
LguI GCTCTTC 1 cut(s) 415
LweI GCATC 4 cut(s) 256, 723, 768, 783
MaeI CTAG 2 cut(s) 432, 653
MaeII ACGT 1 cut(s) 548
MaeIII GTNAC 2 cut(s) 59, 748
MalI GATC 3 cut(s) 140, 657, 765
MboI GATC 3 cut(s) 138, 655, 763
MboII GAAGA 9 cut(s) 81, 155, 171, 260, 402, 413, 429, 432, 566
MflI RGATCY 1 cut(s) 655
MluCI AATT 7 cut(s) 22, 70, 175, 318, 404, 543, 612
MlyI GAGTC 3 cut(s) 64, 94, 118
MnlI CCTC 4 cut(s) 372, 487, 498, 640
MseI TTAA 3 cut(s) 69, 407, 560
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 3 cut(s) 156, 172, 717
Mva1269I GAATGC 1 cut(s) 471
MvaI CCWGG 2 cut(s) 156, 717
MwoI GCNNNNNNNGC 1 cut(s) 742
NciI CCSGG 1 cut(s) 172
NcoI CCATGG 1 cut(s) 225
NdeII GATC 3 cut(s) 138, 655, 763
NlaIII CATG 2 cut(s) 229, 499
NlaIV GGNNCC 1 cut(s) 190
NmuCI GTSAC 2 cut(s) 59, 748
NspV TTCGAA 1 cut(s) 182
PaqCI CACCTGC 1 cut(s) 436
PciSI GCTCTTC 1 cut(s) 415
PctI GAATGC 1 cut(s) 471
PfeI GAWTC 3 cut(s) 35, 194, 452
PkrI GCNGC 1 cut(s) 806
PleI GAGTC 3 cut(s) 63, 94, 117
PpsI GAGTC 3 cut(s) 63, 94, 117
PshBI ATTAAT 1 cut(s) 69
Psp6I CCWGG 2 cut(s) 154, 715
PspGI CCWGG 2 cut(s) 154, 715
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 1 cut(s) 518
PsrI GAACNNNNNNTAC 2 cut(s) 579, 611
PsuI RGATCY 1 cut(s) 655
RsaI GTAC 2 cut(s) 116, 597
RsaNI GTAC 2 cut(s) 115, 596
SapI GCTCTTC 1 cut(s) 415
SaqAI TTAA 3 cut(s) 69, 407, 560
SatI GCNGC 1 cut(s) 805
Sau3AI GATC 3 cut(s) 138, 655, 763
Sau96I GGNCC 1 cut(s) 518
SchI GAGTC 3 cut(s) 64, 94, 118
ScrFI CCNGG 3 cut(s) 156, 172, 717
SfaNI GCATC 4 cut(s) 256, 723, 768, 783
SfuI TTCGAA 1 cut(s) 182
Sse9I AATT 7 cut(s) 22, 70, 175, 318, 404, 543, 612
SsiI CCGC 2 cut(s) 364, 804
SspMI CTAG 2 cut(s) 432, 653
StyD4I CCNGG 3 cut(s) 154, 170, 715
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 1 cut(s) 413
TaiI ACGT 1 cut(s) 551
TaqI TCGA 3 cut(s) 33, 182, 349
TasI AATT 7 cut(s) 22, 70, 175, 318, 404, 543, 612
TauI GCSGC 1 cut(s) 807
TfiI GAWTC 3 cut(s) 35, 194, 452
Tru1I TTAA 3 cut(s) 69, 407, 560
Tru9I TTAA 3 cut(s) 69, 407, 560
TseFI GTSAC 2 cut(s) 59, 748
Tsp45I GTSAC 2 cut(s) 59, 748
TspDTI ATGAA 5 cut(s) 140, 146, 261, 492, 740
TspGWI ACGGA 1 cut(s) 102
VspI ATTAAT 1 cut(s) 69
XagI CCTNNNNNAGG 1 cut(s) 513
XapI RAATTY 2 cut(s) 22, 175
XspI CTAG 2 cut(s) 432, 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.