Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004772

Physical Location & Seq

Genomic Coordinates Forward (+)

32228996 .. 32233689

Gene Structure 4694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G343800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGCGATGGAGTCGAACACGGGGTTTCACCACGACGAAACTTTCGGGTACGGTTTGAACCGACACGCGATATCATTCCAGTCTGGGGCCATAAACAGCACCTCGGATATGATTCCGATGGGGAATTACTTCGGGACGGATGGGGGCATGATGTTCTCTGCGAATTCGGGTATCATTAACAACAACCCTGTAATTAGTCAATCTGGGAATTCATCAGGTTCTCTTCTTCTCGATTCGGTGCCCGGGCTCAAGCATGACACAGGCTTGGCTGTTGAGTGGTCTGTGGAGGAACAATACAAATTGGAGGAGGGCCTTGTCAAATATGCCGAGGAACCAAGTATTATGAGGTACATAAAGATTGCGGCAACATTGCGTGATAAAACTGTGCGTGATGTTGCTTTGAGGTGTAGATGGATGACGAGAAAGCGTAGGAAACCTGAAGAACACATTATGGGAAAGAAGGGGAACATTAGGAAGGATAAACTGATGGAGTCTTCCTCAAAGACAAACATACTGTCAGCTCCACCACTAGACATGGCTGCATATTCTCTTATGGTGCACCATATGGACCATAATGAGCGTTTGCATTGTGAAGGAATAAGTGGCACAGCCAAGCATCTGTTGGAGCAAAATGCTCAAGCTTTTAGTCAAATCACATCTAATCTTTCTACATACAAGTTACAGGAAAACATTGACCTCTTCTGCCGCACGAGGAACAATATAACTTCAATCCTAAATGACATGAGAGGTATGCCTGGCATAATGAGCCGAATGCCACCATTGCCTGTATCCATTAATGAGGAGCTTGCTAATAGTATCTTGCGTAATACAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3755

Protein Analysis

279

Amino Acids

31.04

Weight (kDa)

7.16

Isoelectric Point (pI)

51.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10820 AT1G10820 AT1G60670 AT1G60670 AT1G60670 AT1G60670 AT1G60670 AT1G68160
fragaria_vesca	FvH4_4g36480 FvH4_4g36480
malus_domestica	MD13G1008900.v1.1 MD16G1006900.v1.1
prunus_persica	Prupe.1G343800_v2.0.a1 Prupe.1G343800_v2.0.a1 Prupe.1G343800_v2.0.a1
pyrus_communis	pycom13g00750
rosa_chinensis	RchiOBHm_Chr4g0446241
rosa_laevigata	RLG00000005678
rosa_multiflora	Rmu_sc0002266.1_g000010 Rmu_sc0014728.1_g000006
rosa_roxburghii	Rroxscaffold_5G00386640
rosa_rugosa	Rorug04G0368500 Rorug04G0368600 Rorug04G0368600 Rorug04G0368700 Rorug04G0368800
rosa_samantha	Rh4AG430900 Rh4BG440300 Rh4CG457600 Rh4DG438800
rosa_wichuraiana	Rw4G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	238
AccII	CGCG	1 cut(s)	68
AciI	CCGC	2 cut(s)	362, 706
AcsI	RAATTY	2 cut(s)	163, 208
AcuI	CTGAAG	1 cut(s)	459
AfaI	GTAC	2 cut(s)	50, 350
AfiI	CCNNNNNNNGG	1 cut(s)	85
AgsI	TTSAA	2 cut(s)	58, 729
AjnI	CCWGG	1 cut(s)	754
AluBI	AGCT	3 cut(s)	521, 641, 805
AluI	AGCT	3 cut(s)	521, 641, 805
Alw21I	GWGCWC	1 cut(s)	561
Alw44I	GTGCAC	1 cut(s)	557
Ama87I	CYCGRG	1 cut(s)	242
AoxI	GGCC	2 cut(s)	87, 310
ApaLI	GTGCAC	1 cut(s)	557
ApeKI	GCWGC	1 cut(s)	539
ApoI	RAATTY	2 cut(s)	163, 208
ArsI	GACNNNNNNTTYG	4 cut(s)	26, 58, 500, 532
AseI	ATTAAT	1 cut(s)	795
Asp700I	GAANNNNTTC	1 cut(s)	128
AspS9I	GGNCC	3 cut(s)	87, 310, 568
AsuC2I	CCSGG	2 cut(s)	243, 244
AsuHPI	GGTGA	1 cut(s)	20
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	568
BaeGI	GKGCMC	2 cut(s)	243, 561
BanI	GGYRCC	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	249
BauI	CACGAG	1 cut(s)	709
BbsI	GAAGAC	1 cut(s)	486
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	1 cut(s)	526
BccI	CCATC	4 cut(s)	112, 134, 405, 481
BciT130I	CCWGG	1 cut(s)	756
BciVI	GTATCC	1 cut(s)	799
BcnI	CCSGG	2 cut(s)	243, 244
BfaI	CTAG	1 cut(s)	530
BfuI	GTATCC	1 cut(s)	799
BisI	GCNGC	3 cut(s)	363, 540, 706
BlsI	GCNGC	3 cut(s)	364, 541, 707
Bme1390I	CCNGG	3 cut(s)	243, 244, 756
Bme18I	GGWCC	1 cut(s)	568
BmeT110I	CYCGRG	1 cut(s)	242
BmgT120I	GGNCC	3 cut(s)	87, 310, 568
BmiI	GGNNCC	3 cut(s)	88, 240, 333
BmrFI	CCNGG	3 cut(s)	243, 244, 756
BmsI	GCATC	1 cut(s)	625
BpiI	GAAGAC	1 cut(s)	486
BplI	GAGNNNNNCTC	2 cut(s)	482, 514
BpuEI	CTTGAG	2 cut(s)	233, 621
BpuMI	CCSGG	2 cut(s)	243, 244
BsaJI	CCNNGG	3 cut(s)	102, 242, 327
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse1I	ACTGG	1 cut(s)	79
Bse3DI	GCAATG	2 cut(s)	368, 779
BseBI	CCWGG	1 cut(s)	756
BseDI	CCNNGG	3 cut(s)	102, 242, 327
BseGI	GGATG	2 cut(s)	145, 420
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseMI	GCAATG	2 cut(s)	368, 779
BseNI	ACTGG	1 cut(s)	79
BseRI	GAGGAG	2 cut(s)	320, 815
BseSI	GKGCMC	2 cut(s)	243, 561
BseXI	GCAGC	1 cut(s)	526
Bsh1236I	CGCG	1 cut(s)	68
BshFI	GGCC	2 cut(s)	89, 312
BshNI	GGYRCC	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	561
BsiHKCI	CYCGRG	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	148
BsmI	GAATGC	1 cut(s)	777
BsnI	GGCC	2 cut(s)	89, 312
BsoBI	CYCGRG	1 cut(s)	242
Bsp1286I	GDGCHC	3 cut(s)	243, 249, 561
BspACI	CCGC	2 cut(s)	362, 706
BspANI	GGCC	2 cut(s)	89, 312
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	3 cut(s)	88, 240, 333
BspT107I	GGYRCC	1 cut(s)	238
BsrDI	GCAATG	2 cut(s)	368, 779
BsrI	ACTGG	1 cut(s)	79
BssECI	CCNNGG	3 cut(s)	102, 242, 327
BssSI	CACGAG	1 cut(s)	709
Bst2BI	CACGAG	1 cut(s)	709
Bst2UI	CCWGG	1 cut(s)	756
Bst4CI	ACNGT	3 cut(s)	53, 385, 516
Bst6I	CTCTTC	2 cut(s)	228, 704
BstC8I	GCNNGC	1 cut(s)	807
BstDEI	CTNAG	1 cut(s)	834
BstF5I	GGATG	2 cut(s)	145, 420
BstFNI	CGCG	1 cut(s)	68
BstMWI	GCNNNNNNNGC	2 cut(s)	765, 781
BstNI	CCWGG	1 cut(s)	756
BstSCI	CCNGG	3 cut(s)	241, 242, 754
BstSLI	GKGCMC	2 cut(s)	243, 561
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	526
BstV2I	GAAGAC	1 cut(s)	486
BsuI	GTATCC	1 cut(s)	799
BsuRI	GGCC	2 cut(s)	89, 312
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	145, 420
Cac8I	GCNNGC	1 cut(s)	807
Cfr13I	GGNCC	3 cut(s)	87, 310, 568
Cfr9I	CCCGGG	1 cut(s)	242
Csp6I	GTAC	2 cut(s)	49, 349
CviAII	CATG	4 cut(s)	148, 254, 535, 742
CviQI	GTAC	2 cut(s)	49, 349
DdeI	CTNAG	1 cut(s)	834
Eam1104I	CTCTTC	2 cut(s)	228, 704
EarI	CTCTTC	2 cut(s)	228, 704
Eco24I	GRGCYC	1 cut(s)	249
Eco32I	GATATC	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	568
Eco57I	CTGAAG	1 cut(s)	459
Eco88I	CYCGRG	1 cut(s)	242
EcoO109I	RGGNCCY	1 cut(s)	310
EcoRI	GAATTC	2 cut(s)	163, 208
EcoRII	CCWGG	1 cut(s)	754
EcoRV	GATATC	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	249
FaeI	CATG	4 cut(s)	151, 257, 538, 745
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	4 cut(s)	147, 253, 534, 741
FauNDI	CATATG	1 cut(s)	564
Fnu4HI	GCNGC	3 cut(s)	363, 540, 706
FokI	GGATG	2 cut(s)	152, 427
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	3 cut(s)	363, 540, 706
FspBI	CTAG	1 cut(s)	530
GluI	GCNGC	3 cut(s)	363, 540, 706
HaeIII	GGCC	2 cut(s)	89, 312
HapII	CCGG	1 cut(s)	243
Hin1II	CATG	4 cut(s)	151, 257, 538, 745
HindIII	AAGCTT	1 cut(s)	639
HinfI	GANTC	4 cut(s)	11, 112, 233, 491
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	2 cut(s)	106, 117
Hpy188III	TCNNGA	2 cut(s)	133, 230
Hpy8I	GTNNAC	1 cut(s)	559
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	3 cut(s)	454, 469, 587
HpyCH4III	ACNGT	3 cut(s)	53, 385, 516
HpyCH4V	TGCA	3 cut(s)	542, 559, 586
HpyF10VI	GCNNNNNNNGC	2 cut(s)	765, 781
HpyF3I	CTNAG	1 cut(s)	834
Hsp92II	CATG	4 cut(s)	151, 257, 538, 745
LmnI	GCTCC	3 cut(s)	526, 625, 802
Lsp1109I	GCAGC	1 cut(s)	526
LweI	GCATC	1 cut(s)	625
MaeI	CTAG	1 cut(s)	530
MaeIII	GTNAC	1 cut(s)	678
MboII	GAAGA	5 cut(s)	215, 218, 452, 486, 691
MhlI	GDGCHC	3 cut(s)	243, 249, 561
MluCI	AATT	5 cut(s)	124, 163, 192, 208, 299
MlyI	GAGTC	2 cut(s)	20, 500
MmeI	TCCRAC	1 cut(s)	603
MroXI	GAANNNNTTC	1 cut(s)	128
MseI	TTAA	2 cut(s)	177, 795
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	3 cut(s)	243, 244, 756
Mva1269I	GAATGC	1 cut(s)	777
MvaI	CCWGG	1 cut(s)	756
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	2 cut(s)	765, 781
NciI	CCSGG	2 cut(s)	243, 244
NdeI	CATATG	1 cut(s)	564
NlaIII	CATG	4 cut(s)	151, 257, 538, 745
NlaIV	GGNNCC	3 cut(s)	88, 240, 333
NmeAIII	GCCGAG	1 cut(s)	352
PctI	GAATGC	1 cut(s)	777
PdmI	GAANNNNTTC	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	112, 233
PkrI	GCNGC	3 cut(s)	364, 541, 707
PleI	GAGTC	2 cut(s)	19, 499
PpsI	GAGTC	2 cut(s)	19, 499
PshBI	ATTAAT	1 cut(s)	795
Psp6I	CCWGG	1 cut(s)	754
PspGI	CCWGG	1 cut(s)	754
PspN4I	GGNNCC	3 cut(s)	88, 240, 333
PspPI	GGNCC	3 cut(s)	87, 310, 568
RsaI	GTAC	2 cut(s)	50, 350
RsaNI	GTAC	2 cut(s)	49, 349
SaqAI	TTAA	2 cut(s)	177, 795
SatI	GCNGC	3 cut(s)	363, 540, 706
Sau96I	GGNCC	3 cut(s)	87, 310, 568
SchI	GAGTC	2 cut(s)	20, 500
ScrFI	CCNGG	3 cut(s)	243, 244, 756
SduI	GDGCHC	3 cut(s)	243, 249, 561
SfaNI	GCATC	1 cut(s)	625
SinI	GGWCC	1 cut(s)	568
SmaI	CCCGGG	1 cut(s)	244
SmlI	CTYRAG	2 cut(s)	248, 636
SmoI	CTYRAG	2 cut(s)	248, 636
SrfI	GCCCGGGC	1 cut(s)	244
Sse9I	AATT	5 cut(s)	124, 163, 192, 208, 299
SsiI	CCGC	2 cut(s)	362, 706
SspMI	CTAG	1 cut(s)	530
StyD4I	CCNGG	3 cut(s)	241, 242, 754
TaaI	ACNGT	3 cut(s)	53, 385, 516
TaqI	TCGA	2 cut(s)	14, 231
TasI	AATT	5 cut(s)	124, 163, 192, 208, 299
TauI	GCSGC	2 cut(s)	365, 708
TfiI	GAWTC	2 cut(s)	112, 233
Tru1I	TTAA	2 cut(s)	177, 795
Tru9I	TTAA	2 cut(s)	177, 795
TseI	GCWGC	1 cut(s)	539
TspDTI	ATGAA	1 cut(s)	201
TspGWI	ACGGA	1 cut(s)	152
TspMI	CCCGGG	1 cut(s)	242
VneI	GTGCAC	1 cut(s)	557
VpaK11BI	GGWCC	1 cut(s)	568
VspI	ATTAAT	1 cut(s)	795
XapI	RAATTY	2 cut(s)	163, 208
XcmI	CCANNNNNNNNNTGG	1 cut(s)	619
XmaI	CCCGGG	1 cut(s)	242
XmnI	GAANNNNTTC	1 cut(s)	128
XspI	CTAG	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.