Rw4G036810

Protein of unknown function (DUF3755)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0004772
Physical Location & Seq
Forward (+)
63628594 .. 63632271
3678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G036810.1

Sequence Viewer

Length: 852 bp
ATGGCGATGGAGTCCAACACCGGGTTTCTACATGATGAGACTTTTGGCTATGGCTTGAACCGCCACGCTATATCTTTCCAGTCTGGAGCAATAAACAGCAGCTCGGAGATGATTCCGATGGGGAATTACTTTGGTACTGACCCGGTGATGGGGATGGGGATGGGGATGATGTTCTCTCCGACTTCCGGGTCAGCCATGGGCATGGGCATGGTCAACCACAGTCCTGTAATTAGTCAACCCGGGACTTCATCAGGGGCTTCTCTGCTCGTTGATTCGGTACCGGGCCTCAAGCATGACACAGGCTTGGCAGTTGAGTGGTCTATGGAGGAGCAGTACAAATTGGAGGAGGGCCTTGTCAAATATGCTGATGAACCGAGTATTATGAGGTACATAAAGATTGCGGCAACCTTGCGTGATAAAACTGTGCGTGATGTTGCCTTGAGGTGTAGGTGGATGACAAGAAAGCGGAGGAAACCTGAAGACCATACTACAGGAAAGAAGGGCAACATTAGGAAGATGAGCATACCCTCAGCTCCACAACACAACATGGCTGCATATTCTCTTATGATGCATCGTATGAACCAGAATGAGCGTTTGCAGTGTGAAGGAATAAGTGGGACAGCCAAGCATTTATTGGACCAAAATGCTCAAGCTTTTAATCAAATCACAGCTAACCTTTCTACGTACAAGTTACAGGACAATATTAACCTCTTCTGTCGCACAAGGAACAACTTAACTGCCATCTTGAATGACATGAGAGGTATGCCTGGCTTAATGAGCCAAATGCCGCCGCTGGATGTATGCATAAATGAGAACCTTGCTAATAGTGTTATCTTGCCTAATACAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3755

Protein Analysis

283

Amino Acids

31.29

Weight (kDa)

8.32

Isoelectric Point (pI)

47.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3755 PF12579 228 - 261 7e-19 Protein of unknown function (DUF3755)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 187
Acc65I GGTACC 1 cut(s) 277
AccB1I GGYRCC 1 cut(s) 277
AciI CCGC 5 cut(s) 61, 401, 466, 788, 791
AcuI CTGAAG 1 cut(s) 498
AfaI GTAC 5 cut(s) 136, 279, 335, 389, 686
AfiI CCNNNNNNNGG 4 cut(s) 21, 148, 149, 185
AgsI TTSAA 2 cut(s) 58, 748
AjnI CCWGG 1 cut(s) 766
AluBI AGCT 4 cut(s) 102, 533, 653, 671
AluI AGCT 4 cut(s) 102, 533, 653, 671
Alw26I GTCTC 1 cut(s) 32
Ama87I CYCGRG 1 cut(s) 239
AoxI GGCC 2 cut(s) 283, 349
ApeKI GCWGC 2 cut(s) 99, 551
Asp718I GGTACC 1 cut(s) 277
AspS9I GGNCC 3 cut(s) 283, 349, 637
AsuC2I CCSGG 6 cut(s) 22, 143, 187, 240, 241, 282
AsuHPI GGTGA 1 cut(s) 157
AvaI CYCGRG 1 cut(s) 239
AvaII GGWCC 1 cut(s) 637
BanI GGYRCC 1 cut(s) 277
BbsI GAAGAC 1 cut(s) 486
BbvCI CCTCAGC 1 cut(s) 529
BbvI GCAGC 2 cut(s) 111, 538
BccI CCATC 5 cut(s) 112, 142, 148, 154, 749
BciT130I CCWGG 1 cut(s) 768
BcnI CCSGG 6 cut(s) 22, 143, 187, 240, 241, 282
BcoDI GTCTC 1 cut(s) 32
BfmI CTRYAG 1 cut(s) 489
BisI GCNGC 5 cut(s) 100, 402, 552, 788, 791
BlsI GCNGC 5 cut(s) 101, 403, 553, 789, 792
Bme1390I CCNGG 7 cut(s) 22, 143, 187, 240, 241, 282, 768
Bme18I GGWCC 1 cut(s) 637
BmeT110I CYCGRG 1 cut(s) 239
BmgT120I GGNCC 3 cut(s) 283, 349, 637
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 7 cut(s) 22, 143, 187, 240, 241, 282, 768
BmsI GCATC 2 cut(s) 558, 580
BpiI GAAGAC 1 cut(s) 486
BpmI CTGGAG 1 cut(s) 105
Bpu10I CCTNAGC 1 cut(s) 529
BpuEI CTTGAG 3 cut(s) 272, 460, 633
BpuMI CCSGG 6 cut(s) 22, 143, 187, 240, 241, 282
BsaAI YACGTR 1 cut(s) 684
BsaJI CCNNGG 2 cut(s) 195, 239
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bsc4I CCNNNNNNNGG 4 cut(s) 21, 148, 149, 185
Bse1I ACTGG 1 cut(s) 79
BseBI CCWGG 1 cut(s) 768
BseDI CCNNGG 2 cut(s) 195, 239
BseGI GGATG 5 cut(s) 159, 165, 171, 459, 802
BseLI CCNNNNNNNGG 4 cut(s) 21, 148, 149, 185
BseMII CTCAG 1 cut(s) 543
BseNI ACTGG 1 cut(s) 79
BseRI GAGGAG 2 cut(s) 341, 359
BseXI GCAGC 2 cut(s) 111, 538
BshFI GGCC 2 cut(s) 285, 351
BshNI GGYRCC 1 cut(s) 277
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 5 cut(s) 21, 143, 186, 240, 281
BslFI GGGAC 2 cut(s) 256, 631
BslI CCNNNNNNNGG 4 cut(s) 21, 148, 149, 185
BsmAI GTCTC 1 cut(s) 32
BsmFI GGGAC 2 cut(s) 256, 631
BsnI GGCC 2 cut(s) 285, 351
BsoBI CYCGRG 1 cut(s) 239
Bsp19I CCATGG 1 cut(s) 195
BspACI CCGC 5 cut(s) 61, 401, 466, 788, 791
BspANI GGCC 2 cut(s) 285, 351
BspCNI CTCAG 1 cut(s) 542
BspLI GGNNCC 1 cut(s) 279
BspT107I GGYRCC 1 cut(s) 277
BsrI ACTGG 1 cut(s) 79
BssECI CCNNGG 2 cut(s) 195, 239
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 768
Bst4CI ACNGT 2 cut(s) 221, 424
Bst6I CTCTTC 1 cut(s) 716
BstBAI YACGTR 1 cut(s) 684
BstDEI CTNAG 2 cut(s) 529, 849
BstDSI CCRYGG 1 cut(s) 195
BstF5I GGATG 5 cut(s) 159, 165, 171, 459, 802
BstMAI GTCTC 1 cut(s) 32
BstMWI GCNNNNNNNGC 2 cut(s) 60, 777
BstNI CCWGG 1 cut(s) 768
BstSCI CCNGG 7 cut(s) 20, 141, 185, 238, 239, 280, 766
BstSFI CTRYAG 1 cut(s) 489
BstSNI TACGTA 1 cut(s) 684
BstV1I GCAGC 2 cut(s) 111, 538
BstV2I GAAGAC 1 cut(s) 486
BstXI CCANNNNNNTGG 1 cut(s) 202
BsuRI GGCC 2 cut(s) 285, 351
BtgI CCRYGG 1 cut(s) 195
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 5 cut(s) 159, 165, 171, 459, 802
BtsI GCAGTG 1 cut(s) 605
BtsIMutI CAGTG 1 cut(s) 605
Cfr13I GGNCC 3 cut(s) 283, 349, 637
Cfr9I CCCGGG 1 cut(s) 239
Csp6I GTAC 5 cut(s) 135, 278, 334, 388, 685
CviAII CATG 7 cut(s) 32, 196, 202, 208, 293, 547, 754
CviQI GTAC 5 cut(s) 135, 278, 334, 388, 685
DdeI CTNAG 2 cut(s) 529, 849
DrdI GACNNNNNNGTC 1 cut(s) 187
DseDI GACNNNNNNGTC 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 716
EarI CTCTTC 1 cut(s) 716
Eco105I TACGTA 1 cut(s) 684
Eco130I CCWWGG 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 637
Eco57I CTGAAG 1 cut(s) 498
Eco88I CYCGRG 1 cut(s) 239
EcoO109I RGGNCCY 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 766
EcoT14I CCWWGG 1 cut(s) 195
EcoT22I ATGCAT 2 cut(s) 573, 806
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 7 cut(s) 35, 199, 205, 211, 296, 550, 757
FaqI GGGAC 2 cut(s) 256, 631
FatI CATG 7 cut(s) 31, 195, 201, 207, 292, 546, 753
Fnu4HI GCNGC 5 cut(s) 100, 402, 552, 788, 791
FokI GGATG 5 cut(s) 166, 172, 178, 466, 809
Fsp4HI GCNGC 5 cut(s) 100, 402, 552, 788, 791
GluI GCNGC 5 cut(s) 100, 402, 552, 788, 791
GsuI CTGGAG 1 cut(s) 105
HaeIII GGCC 2 cut(s) 285, 351
HapII CCGG 5 cut(s) 21, 143, 186, 240, 281
Hin1II CATG 7 cut(s) 35, 199, 205, 211, 296, 550, 757
HincII GTYRAC 2 cut(s) 214, 236
HindII GTYRAC 2 cut(s) 214, 236
HindIII AAGCTT 1 cut(s) 651
HinfI GANTC 3 cut(s) 11, 112, 272
HpaII CCGG 5 cut(s) 21, 143, 186, 240, 281
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 2 cut(s) 214, 236
Hpy188I TCNGA 3 cut(s) 106, 117, 180
Hpy188III TCNNGA 2 cut(s) 84, 745
Hpy8I GTNNAC 2 cut(s) 214, 236
HpyAV CCTTC 2 cut(s) 493, 599
HpyCH4III ACNGT 2 cut(s) 221, 424
HpyCH4IV ACGT 1 cut(s) 683
HpyCH4V TGCA 4 cut(s) 554, 571, 598, 804
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 777
HpyF3I CTNAG 2 cut(s) 529, 849
HpySE526I ACGT 1 cut(s) 683
Hsp92II CATG 7 cut(s) 35, 199, 205, 211, 296, 550, 757
KpnI GGTACC 1 cut(s) 281
LmnI GCTCC 3 cut(s) 86, 328, 538
Lsp1109I GCAGC 2 cut(s) 111, 538
LweI GCATC 2 cut(s) 558, 580
MaeII ACGT 1 cut(s) 683
MaeIII GTNAC 1 cut(s) 690
MboII GAAGA 3 cut(s) 491, 526, 703
MluCI AATT 3 cut(s) 124, 228, 338
MlyI GAGTC 1 cut(s) 20
MmeI TCCRAC 2 cut(s) 39, 203
Mph1103I ATGCAT 2 cut(s) 573, 806
MseI TTAA 4 cut(s) 657, 705, 734, 773
MslI CAYNNNNRTG 2 cut(s) 200, 206
MspA1I CMGCKG 1 cut(s) 793
MspI CCGG 5 cut(s) 21, 143, 186, 240, 281
MspR9I CCNGG 7 cut(s) 22, 143, 187, 240, 241, 282, 768
MvaI CCWGG 1 cut(s) 768
MwoI GCNNNNNNNGC 2 cut(s) 60, 777
NciI CCSGG 6 cut(s) 22, 143, 187, 240, 241, 282
NcoI CCATGG 1 cut(s) 195
NlaIII CATG 7 cut(s) 35, 199, 205, 211, 296, 550, 757
NlaIV GGNNCC 1 cut(s) 279
NsiI ATGCAT 2 cut(s) 573, 806
PfeI GAWTC 2 cut(s) 112, 272
PkrI GCNGC 5 cut(s) 101, 403, 553, 789, 792
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
Ppu21I YACGTR 1 cut(s) 684
Psp6I CCWGG 1 cut(s) 766
PspGI CCWGG 1 cut(s) 766
PspN4I GGNNCC 1 cut(s) 279
PspPI GGNCC 3 cut(s) 283, 349, 637
RsaI GTAC 5 cut(s) 136, 279, 335, 389, 686
RsaNI GTAC 5 cut(s) 135, 278, 334, 388, 685
RseI CAYNNNNRTG 2 cut(s) 200, 206
SaqAI TTAA 4 cut(s) 657, 705, 734, 773
SatI GCNGC 5 cut(s) 100, 402, 552, 788, 791
Sau96I GGNCC 3 cut(s) 283, 349, 637
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 7 cut(s) 22, 143, 187, 240, 241, 282, 768
SfaNI GCATC 2 cut(s) 558, 580
SfcI CTRYAG 1 cut(s) 489
SinI GGWCC 1 cut(s) 637
SmaI CCCGGG 1 cut(s) 241
SmiMI CAYNNNNRTG 2 cut(s) 200, 206
SmlI CTYRAG 3 cut(s) 287, 439, 648
SmoI CTYRAG 3 cut(s) 287, 439, 648
SnaBI TACGTA 1 cut(s) 684
Sse9I AATT 3 cut(s) 124, 228, 338
SsiI CCGC 5 cut(s) 61, 401, 466, 788, 791
SspI AATATT 1 cut(s) 703
StyD4I CCNGG 7 cut(s) 20, 141, 185, 238, 239, 280, 766
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 2 cut(s) 221, 424
TaiI ACGT 1 cut(s) 686
TasI AATT 3 cut(s) 124, 228, 338
TatI WGTACW 1 cut(s) 333
TauI GCSGC 3 cut(s) 404, 790, 793
TfiI GAWTC 2 cut(s) 112, 272
Tru1I TTAA 4 cut(s) 657, 705, 734, 773
Tru9I TTAA 4 cut(s) 657, 705, 734, 773
TscAI CASTG 1 cut(s) 605
TseI GCWGC 2 cut(s) 99, 551
TspDTI ATGAA 3 cut(s) 237, 384, 593
TspMI CCCGGG 1 cut(s) 239
TspRI CASTG 1 cut(s) 605
VpaK11BI GGWCC 1 cut(s) 637
XcmI CCANNNNNNNNNTGG 1 cut(s) 631
XmaI CCCGGG 1 cut(s) 239
Zsp2I ATGCAT 2 cut(s) 573, 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.