Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004772

Physical Location & Seq

Genomic Coordinates Reverse (-)

467719 .. 470252

Gene Structure 2534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g00750.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCGATGGAGTCGAACACAGGATATCTCCGCGACGAAGCTTTTGGCTACGGTTTGAACCGACACGCTATATCGTTTCAGTCCGGGGCCATACACAGCAGCTCGGAGATGATTCCGATGGGGAATTACTTTGCTACGGACGGGGGCATGATGTTTTCGTCGATTTCAGGCATAGTTAACAACAATCCTGTAATTAGTCAGGCTGGGAATTCATCAGGTTCTCTGCTTCTCGATTCGGTCCCCGGGCTCAAGCATGACACAGGCTTGGCTGTCGAGTGGTCTGTGGAGGAACAGTACAACTTGACGGAGGGCCTTATCAAATATGCTGATGAACCAAGTATTATGAAATACATAAAGATCGCGGCAATGATACGTGATAAAACTGTGCGTGATGTTGCTTTGAGGTGTAGGTGGATGACTAGAAAGCGTAGGAAACCTGAAGAACATAGTATGGGAAAGAAGGGGAACATTAGGAAGGATAAACTCGTGGAGTCGTCTTCAAAGACAAACATACATTCAGCTGCACCACTGGACATGGCTGCATATTCTCATTCGGTGCACCATATGGACCAGAATGAGCGTTTGCAGTATGAAGGATTAAGTGGCACATTCAAGCATCTATTGGAGCAAAATGCTCAAGCTTTCAGTCAAATTACATCTAATATTTCGTCATACAAGTTGCAGGAAAACATTGACCTCTTCTACCGCACGAGGAACAATTTAAATGCCATCCTTAACAACATGAGAGGTATGCCTGGCATAATGAGCCGAATGCCGCCACTGCCACCCATTGACGAGCGATCTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3755

Protein Analysis

270

Amino Acids

30.13

Weight (kDa)

8.44

Isoelectric Point (pI)

51.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10820 AT1G10820 AT1G60670 AT1G60670 AT1G60670 AT1G60670 AT1G60670 AT1G68160
fragaria_vesca	FvH4_4g36480 FvH4_4g36480
malus_domestica	MD13G1008900.v1.1 MD16G1006900.v1.1
prunus_persica	Prupe.1G343800_v2.0.a1 Prupe.1G343800_v2.0.a1 Prupe.1G343800_v2.0.a1
pyrus_communis	pycom13g00750
rosa_chinensis	RchiOBHm_Chr4g0446241
rosa_laevigata	RLG00000005678
rosa_multiflora	Rmu_sc0002266.1_g000010 Rmu_sc0014728.1_g000006
rosa_roxburghii	Rroxscaffold_5G00386640
rosa_rugosa	Rorug04G0368500 Rorug04G0368600 Rorug04G0368600 Rorug04G0368700 Rorug04G0368800
rosa_samantha	Rh4AG430900 Rh4BG440300 Rh4CG457600 Rh4DG438800
rosa_wichuraiana	Rw4G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	33, 362
AciI	CCGC	4 cut(s)	31, 362, 706, 776
AcsI	RAATTY	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	459
AfaI	GTAC	1 cut(s)	296
AgsI	TTSAA	3 cut(s)	58, 501, 613
AjnI	CCWGG	1 cut(s)	754
AluBI	AGCT	4 cut(s)	41, 102, 521, 641
AluI	AGCT	4 cut(s)	41, 102, 521, 641
Alw21I	GWGCWC	1 cut(s)	561
Alw44I	GTGCAC	1 cut(s)	557
Ama87I	CYCGRG	1 cut(s)	242
AoxI	GGCC	2 cut(s)	87, 310
ApaLI	GTGCAC	1 cut(s)	557
ApeKI	GCWGC	3 cut(s)	99, 521, 539
ApoI	RAATTY	1 cut(s)	208
ArsI	GACNNNNNNTTYG	2 cut(s)	26, 58
AspS9I	GGNCC	4 cut(s)	87, 238, 310, 568
AsuC2I	CCSGG	3 cut(s)	85, 243, 244
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	2 cut(s)	238, 568
BaeGI	GKGCMC	1 cut(s)	561
BanII	GRGCYC	1 cut(s)	249
BauI	CACGAG	2 cut(s)	485, 709
BbsI	GAAGAC	1 cut(s)	489
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	3 cut(s)	111, 508, 526
BccI	CCATC	2 cut(s)	112, 737
BciT130I	CCWGG	1 cut(s)	756
BcnI	CCSGG	3 cut(s)	85, 243, 244
BfaI	CTAG	1 cut(s)	420
BisI	GCNGC	5 cut(s)	100, 363, 522, 540, 776
BlsI	GCNGC	5 cut(s)	101, 364, 523, 541, 777
Bme1390I	CCNGG	4 cut(s)	85, 243, 244, 756
Bme18I	GGWCC	2 cut(s)	238, 568
BmeT110I	CYCGRG	1 cut(s)	242
BmgT120I	GGNCC	4 cut(s)	87, 238, 310, 568
BmiI	GGNNCC	2 cut(s)	88, 240
BmrFI	CCNGG	4 cut(s)	85, 243, 244, 756
BmsI	GCATC	1 cut(s)	625
BpiI	GAAGAC	1 cut(s)	489
BpuEI	CTTGAG	2 cut(s)	233, 621
BpuMI	CCSGG	3 cut(s)	85, 243, 244
BsaAI	YACGTR	1 cut(s)	374
BsaJI	CCNNGG	3 cut(s)	84, 241, 242
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bse1I	ACTGG	1 cut(s)	534
Bse3DI	GCAATG	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	756
BseDI	CCNNGG	3 cut(s)	84, 241, 242
BseGI	GGATG	2 cut(s)	420, 729
BseMI	GCAATG	1 cut(s)	372
BseNI	ACTGG	1 cut(s)	534
BseSI	GKGCMC	1 cut(s)	561
BseXI	GCAGC	3 cut(s)	111, 508, 526
BseYI	CCCAGC	1 cut(s)	203
BsgI	GTGCAG	1 cut(s)	507
Bsh1236I	CGCG	2 cut(s)	33, 362
BshFI	GGCC	2 cut(s)	89, 312
BsiHKAI	GWGCWC	1 cut(s)	561
BsiHKCI	CYCGRG	1 cut(s)	242
BsiSI	CCGG	2 cut(s)	84, 243
BslFI	GGGAC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	224
BsmI	GAATGC	1 cut(s)	777
BsnI	GGCC	2 cut(s)	89, 312
BsoBI	CYCGRG	1 cut(s)	242
Bsp1286I	GDGCHC	2 cut(s)	249, 561
Bsp143I	GATC	2 cut(s)	357, 800
BspACI	CCGC	4 cut(s)	31, 362, 706, 776
BspANI	GGCC	2 cut(s)	89, 312
BspFNI	CGCG	2 cut(s)	33, 362
BspLI	GGNNCC	2 cut(s)	88, 240
BsrDI	GCAATG	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	534
BssECI	CCNNGG	3 cut(s)	84, 241, 242
BssMI	GATC	2 cut(s)	357, 800
BssSI	CACGAG	2 cut(s)	485, 709
Bst2BI	CACGAG	2 cut(s)	485, 709
Bst2UI	CCWGG	1 cut(s)	756
Bst4CI	ACNGT	3 cut(s)	53, 294, 385
Bst6I	CTCTTC	1 cut(s)	704
BstBAI	YACGTR	1 cut(s)	374
BstF5I	GGATG	2 cut(s)	420, 729
BstFNI	CGCG	2 cut(s)	33, 362
BstKTI	GATC	2 cut(s)	360, 803
BstMBI	GATC	2 cut(s)	357, 800
BstMWI	GCNNNNNNNGC	2 cut(s)	765, 781
BstNI	CCWGG	1 cut(s)	756
BstSCI	CCNGG	4 cut(s)	83, 241, 242, 754
BstSLI	GKGCMC	1 cut(s)	561
BstUI	CGCG	2 cut(s)	33, 362
BstV1I	GCAGC	3 cut(s)	111, 508, 526
BstV2I	GAAGAC	1 cut(s)	489
BsuRI	GGCC	2 cut(s)	89, 312
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	420, 729
BtsI	GCAGTG	1 cut(s)	779
BtsIMutI	CAGTG	2 cut(s)	527, 779
Cfr13I	GGNCC	4 cut(s)	87, 238, 310, 568
Cfr9I	CCCGGG	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	4 cut(s)	148, 254, 535, 742
CviQI	GTAC	1 cut(s)	295
DpnI	GATC	2 cut(s)	359, 802
DpnII	GATC	2 cut(s)	357, 800
DraI	TTTAAA	1 cut(s)	723
Eam1104I	CTCTTC	1 cut(s)	704
EarI	CTCTTC	1 cut(s)	704
Eco24I	GRGCYC	1 cut(s)	249
Eco32I	GATATC	1 cut(s)	26
Eco47I	GGWCC	2 cut(s)	238, 568
Eco57I	CTGAAG	1 cut(s)	459
Eco88I	CYCGRG	1 cut(s)	242
EcoO109I	RGGNCCY	1 cut(s)	310
EcoRI	GAATTC	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	754
EcoRV	GATATC	1 cut(s)	26
EcoT38I	GRGCYC	1 cut(s)	249
FaeI	CATG	4 cut(s)	151, 257, 538, 745
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	4 cut(s)	147, 253, 534, 741
FauNDI	CATATG	1 cut(s)	564
Fnu4HI	GCNGC	5 cut(s)	100, 363, 522, 540, 776
FokI	GGATG	2 cut(s)	427, 716
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	5 cut(s)	100, 363, 522, 540, 776
FspBI	CTAG	1 cut(s)	420
GluI	GCNGC	5 cut(s)	100, 363, 522, 540, 776
GsaI	CCCAGC	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	89, 312
HapII	CCGG	2 cut(s)	84, 243
Hin1II	CATG	4 cut(s)	151, 257, 538, 745
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	2 cut(s)	39, 639
HinfI	GANTC	4 cut(s)	11, 112, 233, 491
HpaI	GTTAAC	1 cut(s)	178
HpaII	CCGG	2 cut(s)	84, 243
Hpy166II	GTNNAC	2 cut(s)	178, 559
Hpy188I	TCNGA	2 cut(s)	106, 117
Hpy188III	TCNNGA	1 cut(s)	230
Hpy8I	GTNNAC	2 cut(s)	178, 559
Hpy99I	CGWCG	2 cut(s)	38, 163
HpyAV	CCTTC	3 cut(s)	454, 469, 587
HpyCH4III	ACNGT	3 cut(s)	53, 294, 385
HpyCH4IV	ACGT	1 cut(s)	373
HpyCH4V	TGCA	5 cut(s)	524, 542, 559, 586, 682
HpyF10VI	GCNNNNNNNGC	2 cut(s)	765, 781
HpySE526I	ACGT	1 cut(s)	373
Hsp92II	CATG	4 cut(s)	151, 257, 538, 745
KspAI	GTTAAC	1 cut(s)	178
Kzo9I	GATC	2 cut(s)	357, 800
LmnI	GCTCC	1 cut(s)	625
Lsp1109I	GCAGC	3 cut(s)	111, 508, 526
LweI	GCATC	1 cut(s)	625
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	1 cut(s)	373
MalI	GATC	2 cut(s)	359, 802
MboI	GATC	2 cut(s)	357, 800
MboII	GAAGA	3 cut(s)	452, 489, 691
MhlI	GDGCHC	2 cut(s)	249, 561
MluCI	AATT	5 cut(s)	124, 192, 208, 651, 718
MlyI	GAGTC	2 cut(s)	20, 500
MnlI	CCTC	6 cut(s)	280, 301, 396, 705, 707, 740
MseI	TTAA	4 cut(s)	177, 599, 722, 735
MspA1I	CMGCKG	1 cut(s)	521
MspI	CCGG	2 cut(s)	84, 243
MspR9I	CCNGG	4 cut(s)	85, 243, 244, 756
Mva1269I	GAATGC	1 cut(s)	777
MvaI	CCWGG	1 cut(s)	756
MvnI	CGCG	2 cut(s)	33, 362
MwoI	GCNNNNNNNGC	2 cut(s)	765, 781
NciI	CCSGG	3 cut(s)	85, 243, 244
NdeI	CATATG	1 cut(s)	564
NdeII	GATC	2 cut(s)	357, 800
NlaIII	CATG	4 cut(s)	151, 257, 538, 745
NlaIV	GGNNCC	2 cut(s)	88, 240
PctI	GAATGC	1 cut(s)	777
PfeI	GAWTC	2 cut(s)	112, 233
PkrI	GCNGC	5 cut(s)	101, 364, 523, 541, 777
PleI	GAGTC	2 cut(s)	19, 499
PpsI	GAGTC	2 cut(s)	19, 499
Ppu21I	YACGTR	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	754
PspFI	CCCAGC	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	754
PspN4I	GGNNCC	2 cut(s)	88, 240
PspPI	GGNCC	4 cut(s)	87, 238, 310, 568
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SaqAI	TTAA	4 cut(s)	177, 599, 722, 735
SatI	GCNGC	5 cut(s)	100, 363, 522, 540, 776
Sau3AI	GATC	2 cut(s)	357, 800
Sau96I	GGNCC	4 cut(s)	87, 238, 310, 568
SchI	GAGTC	2 cut(s)	20, 500
ScrFI	CCNGG	4 cut(s)	85, 243, 244, 756
SduI	GDGCHC	2 cut(s)	249, 561
SfaNI	GCATC	1 cut(s)	625
SinI	GGWCC	2 cut(s)	238, 568
SmaI	CCCGGG	1 cut(s)	244
SmiI	ATTTAAAT	1 cut(s)	723
SmlI	CTYRAG	2 cut(s)	248, 636
SmoI	CTYRAG	2 cut(s)	248, 636
Sse9I	AATT	5 cut(s)	124, 192, 208, 651, 718
SsiI	CCGC	4 cut(s)	31, 362, 706, 776
SspI	AATATT	1 cut(s)	664
SspMI	CTAG	1 cut(s)	420
StyD4I	CCNGG	4 cut(s)	83, 241, 242, 754
SwaI	ATTTAAAT	1 cut(s)	723
TaaI	ACNGT	3 cut(s)	53, 294, 385
TaiI	ACGT	1 cut(s)	376
TaqI	TCGA	4 cut(s)	14, 161, 231, 273
TaqII	GACCGA	1 cut(s)	226
TasI	AATT	5 cut(s)	124, 192, 208, 651, 718
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	2 cut(s)	365, 778
TfiI	GAWTC	2 cut(s)	112, 233
Tru1I	TTAA	4 cut(s)	177, 599, 722, 735
Tru9I	TTAA	4 cut(s)	177, 599, 722, 735
TscAI	CASTG	2 cut(s)	534, 786
TseI	GCWGC	3 cut(s)	99, 521, 539
TspDTI	ATGAA	4 cut(s)	201, 345, 359, 606
TspGWI	ACGGA	2 cut(s)	152, 320
TspMI	CCCGGG	1 cut(s)	242
TspRI	CASTG	2 cut(s)	534, 786
VneI	GTGCAC	1 cut(s)	557
VpaK11BI	GGWCC	2 cut(s)	238, 568
XapI	RAATTY	1 cut(s)	208
XmaI	CCCGGG	1 cut(s)	242
XspI	CTAG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.